Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS03605

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS03600 and DZA65_RS03605 are separated by 28 nucleotidesDZA65_RS03605 and DZA65_RS03610 are separated by 113 nucleotides DZA65_RS03600: DZA65_RS03600 - efflux transporter outer membrane subunit, at 755,908 to 757,293 _RS03600 DZA65_RS03605: DZA65_RS03605 - cation efflux system protein CusF, at 757,322 to 757,675 _RS03605 DZA65_RS03610: DZA65_RS03610 - efflux RND transporter periplasmic adaptor subunit, at 757,789 to 759,078 _RS03610 Position (kb) 757 758Strain fitness (log2 ratio) -2 -1 0 1 2at 756.336 kb on + strand, within DZA65_RS03600at 756.336 kb on + strand, within DZA65_RS03600at 756.337 kb on - strand, within DZA65_RS03600at 756.361 kb on + strand, within DZA65_RS03600at 756.361 kb on + strand, within DZA65_RS03600at 756.361 kb on + strand, within DZA65_RS03600at 756.362 kb on - strand, within DZA65_RS03600at 756.362 kb on - strand, within DZA65_RS03600at 756.393 kb on - strand, within DZA65_RS03600at 756.427 kb on + strand, within DZA65_RS03600at 756.428 kb on - strand, within DZA65_RS03600at 756.487 kb on + strand, within DZA65_RS03600at 756.499 kb on + strand, within DZA65_RS03600at 756.499 kb on + strandat 756.499 kb on + strand, within DZA65_RS03600at 756.500 kb on - strand, within DZA65_RS03600at 756.500 kb on - strand, within DZA65_RS03600at 756.593 kb on + strand, within DZA65_RS03600at 756.593 kb on + strand, within DZA65_RS03600at 756.627 kb on + strand, within DZA65_RS03600at 756.627 kb on + strand, within DZA65_RS03600at 756.627 kb on + strand, within DZA65_RS03600at 756.627 kb on + strand, within DZA65_RS03600at 756.627 kb on + strand, within DZA65_RS03600at 756.628 kb on - strand, within DZA65_RS03600at 756.628 kb on - strand, within DZA65_RS03600at 756.628 kb on - strand, within DZA65_RS03600at 756.655 kb on + strand, within DZA65_RS03600at 756.655 kb on + strand, within DZA65_RS03600at 756.655 kb on + strand, within DZA65_RS03600at 756.656 kb on - strand, within DZA65_RS03600at 756.690 kb on + strand, within DZA65_RS03600at 756.690 kb on + strand, within DZA65_RS03600at 756.691 kb on - strand, within DZA65_RS03600at 756.696 kb on + strand, within DZA65_RS03600at 756.760 kb on - strand, within DZA65_RS03600at 756.831 kb on + strand, within DZA65_RS03600at 756.832 kb on - strandat 756.832 kb on - strand, within DZA65_RS03600at 756.865 kb on - strand, within DZA65_RS03600at 756.936 kb on - strand, within DZA65_RS03600at 756.940 kb on - strand, within DZA65_RS03600at 756.940 kb on - strand, within DZA65_RS03600at 757.006 kb on + strand, within DZA65_RS03600at 757.007 kb on - strand, within DZA65_RS03600at 757.032 kb on + strand, within DZA65_RS03600at 757.033 kb on - strand, within DZA65_RS03600at 757.033 kb on - strand, within DZA65_RS03600at 757.065 kb on + strand, within DZA65_RS03600at 757.066 kb on - strand, within DZA65_RS03600at 757.066 kb on - strand, within DZA65_RS03600at 757.112 kb on + strand, within DZA65_RS03600at 757.119 kb on - strand, within DZA65_RS03600at 757.142 kb on + strand, within DZA65_RS03600at 757.143 kb on - strand, within DZA65_RS03600at 757.166 kb on - strandat 757.227 kb on + strandat 757.231 kb on + strandat 757.418 kb on - strand, within DZA65_RS03605at 757.483 kb on + strand, within DZA65_RS03605at 757.582 kb on + strand, within DZA65_RS03605at 757.718 kb on + strandat 757.873 kb on + strandat 757.873 kb on + strandat 757.878 kb on - strandat 757.983 kb on + strand, within DZA65_RS03610at 758.005 kb on - strand, within DZA65_RS03610at 758.029 kb on + strand, within DZA65_RS03610at 758.029 kb on + strand, within DZA65_RS03610at 758.030 kb on - strand, within DZA65_RS03610at 758.137 kb on + strand, within DZA65_RS03610at 758.138 kb on - strand, within DZA65_RS03610at 758.138 kb on - strand, within DZA65_RS03610at 758.164 kb on - strand, within DZA65_RS03610at 758.164 kb on - strand, within DZA65_RS03610at 758.167 kb on + strand, within DZA65_RS03610at 758.168 kb on - strand, within DZA65_RS03610at 758.168 kb on - strand, within DZA65_RS03610at 758.168 kb on - strand, within DZA65_RS03610at 758.169 kb on + strand, within DZA65_RS03610at 758.170 kb on - strand, within DZA65_RS03610at 758.176 kb on + strandat 758.177 kb on - strand, within DZA65_RS03610at 758.227 kb on + strand, within DZA65_RS03610at 758.355 kb on + strand, within DZA65_RS03610at 758.364 kb on - strand, within DZA65_RS03610at 758.451 kb on + strand, within DZA65_RS03610at 758.451 kb on + strand, within DZA65_RS03610at 758.460 kb on + strand, within DZA65_RS03610at 758.460 kb on + strand, within DZA65_RS03610at 758.460 kb on + strand, within DZA65_RS03610at 758.460 kb on + strand, within DZA65_RS03610at 758.460 kb on + strand, within DZA65_RS03610at 758.460 kb on + strand, within DZA65_RS03610at 758.460 kb on + strand, within DZA65_RS03610at 758.461 kb on - strand, within DZA65_RS03610at 758.462 kb on + strand, within DZA65_RS03610at 758.462 kb on + strand, within DZA65_RS03610at 758.462 kb on + strand, within DZA65_RS03610at 758.462 kb on + strand, within DZA65_RS03610at 758.462 kb on + strand, within DZA65_RS03610at 758.462 kb on + strand, within DZA65_RS03610at 758.462 kb on + strand, within DZA65_RS03610at 758.462 kb on + strand, within DZA65_RS03610at 758.462 kb on + strand, within DZA65_RS03610at 758.462 kb on + strand, within DZA65_RS03610at 758.462 kb on + strand, within DZA65_RS03610at 758.462 kb on + strand, within DZA65_RS03610at 758.463 kb on - strand, within DZA65_RS03610at 758.463 kb on - strand, within DZA65_RS03610at 758.463 kb on - strand, within DZA65_RS03610at 758.463 kb on - strand, within DZA65_RS03610at 758.463 kb on - strand, within DZA65_RS03610at 758.463 kb on - strand, within DZA65_RS03610at 758.463 kb on - strand, within DZA65_RS03610at 758.463 kb on - strand, within DZA65_RS03610at 758.463 kb on - strand, within DZA65_RS03610at 758.463 kb on - strand, within DZA65_RS03610at 758.463 kb on - strand, within DZA65_RS03610at 758.463 kb on - strand, within DZA65_RS03610at 758.476 kb on - strand, within DZA65_RS03610at 758.505 kb on + strand, within DZA65_RS03610at 758.506 kb on - strand, within DZA65_RS03610at 758.517 kb on + strand, within DZA65_RS03610at 758.517 kb on + strand, within DZA65_RS03610at 758.517 kb on + strand, within DZA65_RS03610at 758.535 kb on - strand, within DZA65_RS03610at 758.587 kb on + strand, within DZA65_RS03610at 758.587 kb on + strand, within DZA65_RS03610at 758.588 kb on - strand, within DZA65_RS03610at 758.601 kb on + strand, within DZA65_RS03610at 758.602 kb on - strand, within DZA65_RS03610

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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756,336 + DZA65_RS03600 0.31 +1.0
756,336 + DZA65_RS03600 0.31 +0.0
756,337 - DZA65_RS03600 0.31 +0.4
756,361 + DZA65_RS03600 0.33 -2.4
756,361 + DZA65_RS03600 0.33 +0.3
756,361 + DZA65_RS03600 0.33 +1.0
756,362 - DZA65_RS03600 0.33 +2.0
756,362 - DZA65_RS03600 0.33 -0.3
756,393 - DZA65_RS03600 0.35 +0.4
756,427 + DZA65_RS03600 0.37 +1.0
756,428 - DZA65_RS03600 0.38 +0.0
756,487 + DZA65_RS03600 0.42 +0.2
756,499 + DZA65_RS03600 0.43 +0.3
756,499 + -0.6
756,499 + DZA65_RS03600 0.43 -0.1
756,500 - DZA65_RS03600 0.43 +0.6
756,500 - DZA65_RS03600 0.43 +1.2
756,593 + DZA65_RS03600 0.49 -0.2
756,593 + DZA65_RS03600 0.49 -0.3
756,627 + DZA65_RS03600 0.52 +0.0
756,627 + DZA65_RS03600 0.52 -0.0
756,627 + DZA65_RS03600 0.52 +0.0
756,627 + DZA65_RS03600 0.52 +0.1
756,627 + DZA65_RS03600 0.52 -0.6
756,628 - DZA65_RS03600 0.52 -0.3
756,628 - DZA65_RS03600 0.52 +0.9
756,628 - DZA65_RS03600 0.52 +0.3
756,655 + DZA65_RS03600 0.54 -0.9
756,655 + DZA65_RS03600 0.54 +0.4
756,655 + DZA65_RS03600 0.54 +0.1
756,656 - DZA65_RS03600 0.54 +0.2
756,690 + DZA65_RS03600 0.56 -1.4
756,690 + DZA65_RS03600 0.56 -0.3
756,691 - DZA65_RS03600 0.56 +0.8
756,696 + DZA65_RS03600 0.57 -0.7
756,760 - DZA65_RS03600 0.61 +0.5
756,831 + DZA65_RS03600 0.67 -0.2
756,832 - -0.3
756,832 - DZA65_RS03600 0.67 +0.0
756,865 - DZA65_RS03600 0.69 +0.5
756,936 - DZA65_RS03600 0.74 +0.4
756,940 - DZA65_RS03600 0.74 -0.6
756,940 - DZA65_RS03600 0.74 -0.4
757,006 + DZA65_RS03600 0.79 +1.2
757,007 - DZA65_RS03600 0.79 +0.1
757,032 + DZA65_RS03600 0.81 -0.2
757,033 - DZA65_RS03600 0.81 -0.4
757,033 - DZA65_RS03600 0.81 -0.2
757,065 + DZA65_RS03600 0.83 -1.6
757,066 - DZA65_RS03600 0.84 +0.5
757,066 - DZA65_RS03600 0.84 -0.2
757,112 + DZA65_RS03600 0.87 +0.0
757,119 - DZA65_RS03600 0.87 +0.4
757,142 + DZA65_RS03600 0.89 -0.2
757,143 - DZA65_RS03600 0.89 +0.2
757,166 - -0.8
757,227 + -0.3
757,231 + +0.1
757,418 - DZA65_RS03605 0.27 -1.4
757,483 + DZA65_RS03605 0.45 -1.2
757,582 + DZA65_RS03605 0.73 -0.4
757,718 + -0.7
757,873 + +0.0
757,873 + +0.3
757,878 - +0.4
757,983 + DZA65_RS03610 0.15 -0.3
758,005 - DZA65_RS03610 0.17 -0.6
758,029 + DZA65_RS03610 0.19 +0.3
758,029 + DZA65_RS03610 0.19 +1.2
758,030 - DZA65_RS03610 0.19 -0.1
758,137 + DZA65_RS03610 0.27 -0.3
758,138 - DZA65_RS03610 0.27 +0.3
758,138 - DZA65_RS03610 0.27 -0.6
758,164 - DZA65_RS03610 0.29 +0.5
758,164 - DZA65_RS03610 0.29 -0.8
758,167 + DZA65_RS03610 0.29 +0.2
758,168 - DZA65_RS03610 0.29 -0.2
758,168 - DZA65_RS03610 0.29 -0.7
758,168 - DZA65_RS03610 0.29 +0.5
758,169 + DZA65_RS03610 0.29 +1.8
758,170 - DZA65_RS03610 0.30 -1.3
758,176 + +1.0
758,177 - DZA65_RS03610 0.30 -1.0
758,227 + DZA65_RS03610 0.34 +0.2
758,355 + DZA65_RS03610 0.44 +0.5
758,364 - DZA65_RS03610 0.45 -0.4
758,451 + DZA65_RS03610 0.51 +0.3
758,451 + DZA65_RS03610 0.51 +0.3
758,460 + DZA65_RS03610 0.52 -0.6
758,460 + DZA65_RS03610 0.52 -1.8
758,460 + DZA65_RS03610 0.52 -0.6
758,460 + DZA65_RS03610 0.52 -0.4
758,460 + DZA65_RS03610 0.52 +1.0
758,460 + DZA65_RS03610 0.52 -0.6
758,460 + DZA65_RS03610 0.52 +0.3
758,461 - DZA65_RS03610 0.52 -0.3
758,462 + DZA65_RS03610 0.52 -0.2
758,462 + DZA65_RS03610 0.52 -0.2
758,462 + DZA65_RS03610 0.52 -0.2
758,462 + DZA65_RS03610 0.52 +1.0
758,462 + DZA65_RS03610 0.52 -0.6
758,462 + DZA65_RS03610 0.52 +0.0
758,462 + DZA65_RS03610 0.52 +0.2
758,462 + DZA65_RS03610 0.52 -0.6
758,462 + DZA65_RS03610 0.52 -0.5
758,462 + DZA65_RS03610 0.52 +0.2
758,462 + DZA65_RS03610 0.52 +0.7
758,462 + DZA65_RS03610 0.52 +0.0
758,463 - DZA65_RS03610 0.52 +0.3
758,463 - DZA65_RS03610 0.52 +2.0
758,463 - DZA65_RS03610 0.52 -0.9
758,463 - DZA65_RS03610 0.52 +0.5
758,463 - DZA65_RS03610 0.52 +0.0
758,463 - DZA65_RS03610 0.52 -1.6
758,463 - DZA65_RS03610 0.52 +1.3
758,463 - DZA65_RS03610 0.52 +0.0
758,463 - DZA65_RS03610 0.52 +1.0
758,463 - DZA65_RS03610 0.52 -0.5
758,463 - DZA65_RS03610 0.52 +0.0
758,463 - DZA65_RS03610 0.52 -0.4
758,476 - DZA65_RS03610 0.53 -0.3
758,505 + DZA65_RS03610 0.56 -0.2
758,506 - DZA65_RS03610 0.56 -0.4
758,517 + DZA65_RS03610 0.56 -0.3
758,517 + DZA65_RS03610 0.56 -0.4
758,517 + DZA65_RS03610 0.56 -0.4
758,535 - DZA65_RS03610 0.58 -0.9
758,587 + DZA65_RS03610 0.62 -0.3
758,587 + DZA65_RS03610 0.62 -1.0
758,588 - DZA65_RS03610 0.62 -0.3
758,601 + DZA65_RS03610 0.63 +0.8
758,602 - DZA65_RS03610 0.63 +0.7

Or see this region's nucleotide sequence