Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22635

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,895,497	+		DZA65_RS22630	0.42	-0.9
4,895,497	+		DZA65_RS22630	0.42	-0.2
4,895,497	+		DZA65_RS22630	0.42	-0.7
4,895,497	+		DZA65_RS22630	0.42	-0.2
4,895,498	-		DZA65_RS22630	0.43	-0.1
4,895,517	+		DZA65_RS22630	0.44	+0.5
4,895,517	+		DZA65_RS22630	0.44	+0.9
4,895,517	+		DZA65_RS22630	0.44	+0.2
4,895,517	+		DZA65_RS22630	0.44	+0.9
4,895,517	+		DZA65_RS22630	0.44	-0.1
4,895,517	+		DZA65_RS22630	0.44	+0.1
4,895,517	+		DZA65_RS22630	0.44	+0.3
4,895,517	+		DZA65_RS22630	0.44	-0.3
4,895,517	+		DZA65_RS22630	0.44	+0.5
4,895,517	+		DZA65_RS22630	0.44	-2.4
4,895,518	-		DZA65_RS22630	0.44	-0.2
4,895,518	-		DZA65_RS22630	0.44	+0.2
4,895,518	-		DZA65_RS22630	0.44	+0.3
4,895,518	-		DZA65_RS22630	0.44	-2.1
4,895,518	-		DZA65_RS22630	0.44	+1.0
4,895,570	-		DZA65_RS22630	0.47	-0.1
4,895,572	+		DZA65_RS22630	0.47	-1.0
4,895,572	+		DZA65_RS22630	0.47	+0.7
4,895,573	-		DZA65_RS22630	0.47	-0.4
4,895,573	-		DZA65_RS22630	0.47	-0.2
4,895,573	-		DZA65_RS22630	0.47	+1.9
4,895,573	-		DZA65_RS22630	0.47	-0.4
4,895,674	+		DZA65_RS22630	0.53	+0.1
4,895,740	+		DZA65_RS22630	0.57	-0.8
4,895,740	+		DZA65_RS22630	0.57	+1.3
4,895,740	+		DZA65_RS22630	0.57	+1.2
4,895,740	+		DZA65_RS22630	0.57	-0.4
4,895,740	+		DZA65_RS22630	0.57	-0.5
4,895,740	+		DZA65_RS22630	0.57	+0.0
4,895,741	-		DZA65_RS22630	0.57	+0.3
4,895,741	-		DZA65_RS22630	0.57	+0.5
4,895,741	-		DZA65_RS22630	0.57	-0.5
4,895,741	-		DZA65_RS22630	0.57	+1.8
4,895,741	-		DZA65_RS22630	0.57	+0.8
4,895,741	-		DZA65_RS22630	0.57	+0.9
4,895,741	-		DZA65_RS22630	0.57	+0.7
4,895,741	-		DZA65_RS22630	0.57	+0.5
4,895,914	+		DZA65_RS22630	0.68	+0.2
4,895,914	+		DZA65_RS22630	0.68	-0.2
4,895,914	+		DZA65_RS22630	0.68	+0.4
4,895,914	+		DZA65_RS22630	0.68	+0.0
4,895,914	+		DZA65_RS22630	0.68	+1.2
4,895,914	+		DZA65_RS22630	0.68	-0.0
4,895,915	-		DZA65_RS22630	0.68	-0.3
4,895,915	-		DZA65_RS22630	0.68	+0.3
4,896,151	+		DZA65_RS22630	0.82	-0.5
4,896,151	+		DZA65_RS22630	0.82	+0.5
4,896,152	-		DZA65_RS22630	0.82	+1.1
4,896,152	-		DZA65_RS22630	0.82	+0.1
4,896,152	-		DZA65_RS22630	0.82	+1.0
4,896,213	+		DZA65_RS22630	0.86	-1.5
4,896,223	+		DZA65_RS22630	0.86	+1.1
4,896,223	+		DZA65_RS22630	0.86	+0.8
4,896,223	+		DZA65_RS22630	0.86	-1.2
4,896,223	+		DZA65_RS22630	0.86	-1.5
4,896,223	+		DZA65_RS22630	0.86	+0.1
4,896,224	-		DZA65_RS22630	0.86	+0.9
4,896,224	-		DZA65_RS22630	0.86	-0.8
4,896,224	-		DZA65_RS22630	0.86	-0.1
4,896,224	-		DZA65_RS22630	0.86	+1.1
4,896,224	-		DZA65_RS22630	0.86	+0.2
4,896,224	-		DZA65_RS22630	0.86	-0.0
4,896,248	-		DZA65_RS22630	0.88	+1.7
4,896,353	+				-0.1
4,896,353	+				+2.0
4,896,400	+				-0.7
4,896,400	+				+0.8
4,896,400	+				-0.5
4,896,400	+				+0.1
4,896,401	-				+1.0
4,896,401	-				+1.9
4,896,401	-				-0.4
4,896,401	-				-0.4
4,896,402	+				-0.2
4,896,402	+				-0.5
4,896,402	+				+0.0
4,896,402	+				+0.2
4,896,402	+				-0.1
4,896,403	-				+0.9
4,896,403	-				-0.0
4,896,403	-				-0.7
4,896,403	-				-0.1
4,896,403	-				-1.1
4,896,403	-				+0.3
4,896,428	+				+0.8
4,896,429	-				-1.2
4,896,429	-				-0.7
4,896,431	+				+0.2
4,896,431	+				+0.5
4,896,431	+				+1.0
4,896,431	+				-0.2
4,896,431	+				+1.3
4,896,431	+				+0.1
4,896,432	-				+0.3
4,896,432	-				+1.1
4,896,432	-				-0.5
4,896,432	-				+0.7
4,896,432	-				+0.4
4,896,432	-				-0.9
4,896,432	-				-0.5
4,896,432	-				+0.6
4,896,432	-				+1.0
4,896,456	+				-4.4
4,896,456	+				-4.0
4,896,456	+				-3.4
4,896,456	+				-3.6
4,896,456	+				-2.2
4,896,457	-				-4.3
4,896,457	-				-2.8
4,896,557	+		DZA65_RS22635	0.32	-0.7
4,896,719	+		DZA65_RS22635	0.80	-1.9
4,896,719	+		DZA65_RS22635	0.80	-1.6
4,896,719	+		DZA65_RS22635	0.80	-2.9
4,896,719	+		DZA65_RS22635	0.80	-1.2
4,896,719	+				+1.3
4,896,719	+		DZA65_RS22635	0.80	-2.7
4,896,719	+		DZA65_RS22635	0.80	-0.8
4,896,720	-				-1.2
4,896,720	-		DZA65_RS22635	0.80	-1.5
4,896,720	-		DZA65_RS22635	0.80	-1.0
4,896,720	-		DZA65_RS22635	0.80	-3.4
4,896,763	+				-3.1
4,896,763	+				-1.5
4,896,763	+				-2.7
4,896,764	-				-2.0
4,896,764	-				-3.0
4,896,764	-				-5.1
4,896,764	-				-4.9
4,896,764	-				-1.2
4,896,764	-				-0.2
4,896,764	-				-2.1
4,896,794	+				-0.7
4,896,810	+				-0.2
4,896,810	+				-2.2
4,896,810	+				-1.0
4,896,811	-				-4.8
4,896,895	+		DZA65_RS22640	0.28	-2.5
4,896,895	+		DZA65_RS22640	0.28	-3.4
4,896,895	+		DZA65_RS22640	0.28	-1.8
4,896,896	-		DZA65_RS22640	0.28	-1.2
4,896,896	-		DZA65_RS22640	0.28	-2.4
4,896,896	-		DZA65_RS22640	0.28	-2.4
4,896,956	+		DZA65_RS22640	0.43	-3.6
4,896,956	+		DZA65_RS22640	0.43	-2.9
4,896,956	+		DZA65_RS22640	0.43	-1.4
4,896,982	+		DZA65_RS22640	0.49	-1.2
4,896,983	-		DZA65_RS22640	0.50	-1.5
4,897,017	-		DZA65_RS22640	0.58	-3.1
4,897,037	+		DZA65_RS22640	0.63	-2.5
4,897,037	+		DZA65_RS22640	0.63	-3.0
4,897,037	+		DZA65_RS22640	0.63	-2.2
4,897,037	+		DZA65_RS22640	0.63	-2.5
4,897,038	-		DZA65_RS22640	0.63	-0.6
4,897,038	-		DZA65_RS22640	0.63	-0.8
4,897,038	-		DZA65_RS22640	0.63	-2.0
4,897,038	-		DZA65_RS22640	0.63	-3.1
4,897,123	+		DZA65_RS22640	0.85	+0.6
4,897,134	+		DZA65_RS22640	0.87	-4.4
4,897,134	+		DZA65_RS22640	0.87	-3.2
4,897,134	+		DZA65_RS22640	0.87	-1.5
4,897,134	+		DZA65_RS22640	0.87	-3.3
4,897,282	-				-1.0
4,897,282	-				-1.5
4,897,282	-				+0.8
4,897,289	+				-1.2
4,897,289	+				+1.1
4,897,289	+				-0.2
4,897,289	+				+0.1
4,897,289	+				+0.5
4,897,289	+				-0.8
4,897,289	+				-0.1
4,897,289	+				+0.4
4,897,289	+				+0.2
4,897,289	+				-0.1
4,897,289	+				+0.6
4,897,289	+				-2.1
4,897,289	+				-1.4
4,897,289	+				+0.2
4,897,289	+				+0.4
4,897,289	+				-0.7
4,897,289	+				-1.7
4,897,289	+				+0.3
4,897,289	+				-1.0
4,897,289	+				+0.8
4,897,289	+				+0.2
4,897,289	+				+0.3
4,897,289	+				-0.2
4,897,290	-				+0.3
4,897,290	-				-0.2
4,897,290	-				-1.1
4,897,290	-				-0.4
4,897,290	-				-0.6
4,897,290	-				-0.2
4,897,290	-				-0.4
4,897,290	-				+0.8
4,897,290	-				-0.1
4,897,290	-				-0.2
4,897,290	-				-0.1
4,897,290	-				+1.3
4,897,290	-				+2.2
4,897,290	-				-0.6
4,897,290	-				-1.2
4,897,293	+				+0.5
4,897,339	-		DZA65_RS22645	0.12	+0.5
4,897,357	+		DZA65_RS22645	0.15	+0.8
4,897,358	-		DZA65_RS22645	0.16	-1.4
4,897,358	-		DZA65_RS22645	0.16	-0.7
4,897,386	+		DZA65_RS22645	0.21	+1.8
4,897,387	-		DZA65_RS22645	0.21	-2.7
4,897,495	+		DZA65_RS22645	0.44	-0.8
4,897,496	-		DZA65_RS22645	0.44	+0.3
4,897,496	-		DZA65_RS22645	0.44	+1.1
4,897,496	-				+0.3
4,897,496	-		DZA65_RS22645	0.44	-0.7
4,897,525	+		DZA65_RS22645	0.50	-0.2
4,897,525	+		DZA65_RS22645	0.50	-1.5
4,897,526	-		DZA65_RS22645	0.50	-0.0
4,897,526	-		DZA65_RS22645	0.50	-0.9
4,897,526	-		DZA65_RS22645	0.50	-0.7
4,897,526	-		DZA65_RS22645	0.50	-1.7
4,897,540	+		DZA65_RS22645	0.53	-1.2
4,897,540	+		DZA65_RS22645	0.53	-1.3
4,897,540	+		DZA65_RS22645	0.53	+1.0
4,897,540	+		DZA65_RS22645	0.53	-0.2
4,897,540	+		DZA65_RS22645	0.53	+0.1
4,897,541	-		DZA65_RS22645	0.53	-0.6
4,897,541	-		DZA65_RS22645	0.53	-0.2
4,897,541	-		DZA65_RS22645	0.53	-1.0
4,897,541	-		DZA65_RS22645	0.53	+0.3
4,897,541	-		DZA65_RS22645	0.53	+0.1
4,897,541	-		DZA65_RS22645	0.53	+0.7
4,897,541	-		DZA65_RS22645	0.53	-0.5
4,897,541	-		DZA65_RS22645	0.53	-0.1
4,897,541	-		DZA65_RS22645	0.53	+0.2
4,897,544	+		DZA65_RS22645	0.54	+0.4
4,897,591	+		DZA65_RS22645	0.63	-1.1
4,897,591	+		DZA65_RS22645	0.63	+0.4
4,897,591	+		DZA65_RS22645	0.63	-0.2
4,897,591	+		DZA65_RS22645	0.63	-0.5
4,897,591	+		DZA65_RS22645	0.63	-0.5
4,897,591	+		DZA65_RS22645	0.63	+0.1
4,897,591	+		DZA65_RS22645	0.63	+0.0
4,897,591	+		DZA65_RS22645	0.63	+1.0
4,897,591	+		DZA65_RS22645	0.63	+1.1
4,897,591	+		DZA65_RS22645	0.63	-0.1
4,897,591	+		DZA65_RS22645	0.63	+0.1
4,897,591	+		DZA65_RS22645	0.63	-1.0
4,897,591	+		DZA65_RS22645	0.63	-0.2
4,897,591	+		DZA65_RS22645	0.63	+0.5
4,897,591	+		DZA65_RS22645	0.63	-0.1
4,897,592	-		DZA65_RS22645	0.63	-1.0
4,897,592	-		DZA65_RS22645	0.63	+0.6
4,897,592	-		DZA65_RS22645	0.63	+0.6
4,897,592	-		DZA65_RS22645	0.63	-0.1
4,897,592	-		DZA65_RS22645	0.63	-1.0
4,897,592	-		DZA65_RS22645	0.63	-0.6
4,897,592	-		DZA65_RS22645	0.63	-0.7
4,897,592	-		DZA65_RS22645	0.63	+0.0
4,897,592	-		DZA65_RS22645	0.63	+0.5
4,897,592	-		DZA65_RS22645	0.63	-0.2
4,897,592	-		DZA65_RS22645	0.63	-0.5
4,897,593	+		DZA65_RS22645	0.64	-0.0
4,897,593	+		DZA65_RS22645	0.64	-0.2
4,897,593	+		DZA65_RS22645	0.64	-0.2
4,897,593	+		DZA65_RS22645	0.64	-1.7
4,897,594	-		DZA65_RS22645	0.64	-2.2
4,897,594	-		DZA65_RS22645	0.64	+0.2
4,897,594	-		DZA65_RS22645	0.64	-0.6
4,897,594	-		DZA65_RS22645	0.64	+0.8
4,897,594	-		DZA65_RS22645	0.64	+1.5
4,897,675	+		DZA65_RS22645	0.80	+0.0
4,897,680	+		DZA65_RS22645	0.81	-0.2
4,897,768	+				+0.2
4,897,768	+				+0.4
4,897,769	-				-1.5
4,897,775	+				+0.5
4,897,776	-				-0.2
4,897,776	-				+0.4