Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22335

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,829,386	+		DZA65_RS22330	0.35	+0.3
4,829,386	+		DZA65_RS22330	0.35	-1.2
4,829,387	-		DZA65_RS22330	0.35	-0.2
4,829,387	-				-0.7
4,829,387	-		DZA65_RS22330	0.35	+0.1
4,829,387	-		DZA65_RS22330	0.35	+0.0
4,829,387	-		DZA65_RS22330	0.35	-0.2
4,829,387	-		DZA65_RS22330	0.35	+1.9
4,829,388	+		DZA65_RS22330	0.35	+0.2
4,829,388	+		DZA65_RS22330	0.35	-0.1
4,829,388	+		DZA65_RS22330	0.35	+0.6
4,829,388	+		DZA65_RS22330	0.35	-0.4
4,829,388	+				+0.3
4,829,388	+		DZA65_RS22330	0.35	-0.9
4,829,388	+		DZA65_RS22330	0.35	-0.2
4,829,388	+		DZA65_RS22330	0.35	+0.4
4,829,388	+		DZA65_RS22330	0.35	+0.3
4,829,389	-		DZA65_RS22330	0.35	-1.0
4,829,389	-		DZA65_RS22330	0.35	-1.2
4,829,389	-		DZA65_RS22330	0.35	-0.3
4,829,389	-		DZA65_RS22330	0.35	+0.2
4,829,389	-		DZA65_RS22330	0.35	-1.5
4,829,389	-		DZA65_RS22330	0.35	-1.6
4,829,421	+		DZA65_RS22330	0.38	-0.3
4,829,462	+		DZA65_RS22330	0.41	+0.6
4,829,462	+		DZA65_RS22330	0.41	+0.3
4,829,462	+		DZA65_RS22330	0.41	+0.7
4,829,462	+		DZA65_RS22330	0.41	-0.6
4,829,462	+		DZA65_RS22330	0.41	+0.5
4,829,462	+		DZA65_RS22330	0.41	-0.1
4,829,463	-		DZA65_RS22330	0.41	+1.3
4,829,463	-		DZA65_RS22330	0.41	+1.3
4,829,463	-		DZA65_RS22330	0.41	+0.4
4,829,463	-		DZA65_RS22330	0.41	-0.6
4,829,509	+		DZA65_RS22330	0.44	-1.5
4,829,509	+		DZA65_RS22330	0.44	-1.0
4,829,510	-		DZA65_RS22330	0.44	+0.5
4,829,538	+		DZA65_RS22330	0.46	-0.5
4,829,538	+		DZA65_RS22330	0.46	-0.6
4,829,538	+		DZA65_RS22330	0.46	-0.1
4,829,539	-		DZA65_RS22330	0.46	+0.6
4,829,655	+		DZA65_RS22330	0.55	-0.1
4,829,655	+		DZA65_RS22330	0.55	-1.4
4,829,655	+		DZA65_RS22330	0.55	-0.7
4,829,656	-		DZA65_RS22330	0.55	-1.3
4,829,656	-		DZA65_RS22330	0.55	+0.6
4,829,656	-		DZA65_RS22330	0.55	-0.5
4,829,656	-		DZA65_RS22330	0.55	-1.5
4,829,656	-		DZA65_RS22330	0.55	-0.9
4,829,656	-		DZA65_RS22330	0.55	+0.0
4,829,656	-		DZA65_RS22330	0.55	+0.5
4,829,716	+		DZA65_RS22330	0.59	-1.0
4,829,716	+		DZA65_RS22330	0.59	-1.7
4,829,724	+		DZA65_RS22330	0.60	-0.3
4,829,793	+		DZA65_RS22330	0.65	-1.5
4,829,845	-		DZA65_RS22330	0.69	-0.8
4,829,845	-		DZA65_RS22330	0.69	+1.3
4,829,992	-		DZA65_RS22330	0.80	-2.2
4,830,011	+		DZA65_RS22330	0.81	-0.4
4,830,011	+		DZA65_RS22330	0.81	-0.6
4,830,012	-		DZA65_RS22330	0.81	+1.7
4,830,012	-		DZA65_RS22330	0.81	-0.2
4,830,181	+				-1.4
4,830,181	+				+1.3
4,830,181	+				+0.1
4,830,181	+				+0.5
4,830,181	+				+0.3
4,830,182	-				+0.3
4,830,182	-				-0.5
4,830,182	-				-0.2
4,830,182	-				-0.4
4,830,182	-				+0.8
4,830,182	-				-2.1
4,830,195	+				+1.0
4,830,195	+				-1.5
4,830,195	+				-0.0
4,830,195	+				-0.9
4,830,195	+				-1.2
4,830,195	+				-1.5
4,830,195	+				+0.9
4,830,195	+				-1.8
4,830,195	+				-1.2
4,830,195	+				-0.1
4,830,195	+				-1.8
4,830,195	+				-0.5
4,830,195	+				+0.2
4,830,195	+				-0.8
4,830,195	+				+0.2
4,830,195	+				-0.9
4,830,196	-				+1.9
4,830,196	-				+0.2
4,830,196	-				+0.0
4,830,196	-				-0.5
4,830,196	-				+0.5
4,830,196	-				-2.0
4,830,196	-				-1.8
4,830,196	-				+0.1
4,830,196	-				-1.8
4,830,196	-				+0.6
4,830,196	-				-0.3
4,830,196	-				+0.3
4,830,342	+				+0.2
4,830,343	-				+1.3
4,830,361	-				-0.5
4,830,383	+				+1.0
4,830,392	-				-1.7
4,830,500	+				-2.6
4,830,500	+				-3.2
4,830,500	+				-3.0
4,830,500	+				-2.0
4,830,500	+				-1.7
4,830,500	+				-3.6
4,830,500	+				-1.1
4,830,500	+				-1.5
4,830,500	+				-1.8
4,830,500	+				-2.0
4,830,500	+				-1.2
4,830,500	+				-1.3
4,830,500	+				-2.3
4,830,500	+				-2.7
4,830,500	+				-1.5
4,830,501	-				+0.5
4,830,501	-				-1.6
4,830,501	-				-3.3
4,830,501	-				-2.3
4,830,501	-				-2.4
4,830,501	-				-2.5
4,830,501	-				-2.5
4,830,501	-				-2.1
4,830,501	-				-2.2
4,830,501	-				-1.0
4,830,501	-				-1.4
4,830,501	-				-3.0
4,830,501	-				-3.2
4,830,501	-				-1.5
4,830,501	-				-1.4
4,830,501	-				-1.6
4,830,501	-				+0.1
4,830,501	-				-1.4
4,830,501	-				-1.2
4,830,501	-				-1.5
4,830,501	-				-0.8
4,830,502	+				-1.5
4,830,502	+				-2.6
4,830,502	+				-1.4
4,830,502	+				-2.7
4,830,502	+				-3.8
4,830,502	+				-1.4
4,830,502	+				-1.0
4,830,502	+				-2.2
4,830,503	-				-1.0
4,830,503	-				-2.7
4,830,503	-				-3.1
4,830,503	-				-3.2
4,830,503	-				-1.8
4,830,503	-				+0.0
4,830,503	-				-0.5
4,830,503	-				-2.8
4,830,503	-				-2.2
4,830,503	-				-0.9
4,830,503	-				+2.8
4,830,632	+		DZA65_RS22335	0.13	-3.0
4,830,632	+		DZA65_RS22335	0.13	-2.0
4,830,633	-		DZA65_RS22335	0.13	-2.0
4,830,693	+		DZA65_RS22335	0.17	-1.0
4,830,694	-		DZA65_RS22335	0.17	-1.6
4,830,701	+		DZA65_RS22335	0.17	-3.5
4,830,701	+		DZA65_RS22335	0.17	-1.3
4,830,701	+		DZA65_RS22335	0.17	-0.4
4,830,701	+		DZA65_RS22335	0.17	-1.6
4,830,701	+		DZA65_RS22335	0.17	-2.1
4,830,701	+		DZA65_RS22335	0.17	-2.8
4,830,701	+		DZA65_RS22335	0.17	-1.7
4,830,702	-		DZA65_RS22335	0.17	+0.0
4,830,702	-		DZA65_RS22335	0.17	-3.5
4,830,702	-		DZA65_RS22335	0.17	-1.2
4,830,702	-				-0.7
4,830,702	-		DZA65_RS22335	0.17	-2.1
4,830,702	-		DZA65_RS22335	0.17	-0.8
4,830,702	-		DZA65_RS22335	0.17	-1.5
4,830,702	-		DZA65_RS22335	0.17	-1.7
4,830,702	-		DZA65_RS22335	0.17	-1.7
4,830,702	-		DZA65_RS22335	0.17	-1.1
4,830,702	-		DZA65_RS22335	0.17	-1.2
4,830,702	-		DZA65_RS22335	0.17	-2.2
4,830,702	-		DZA65_RS22335	0.17	-3.0
4,830,751	+		DZA65_RS22335	0.20	-2.1
4,830,751	+		DZA65_RS22335	0.20	-2.2
4,830,751	+		DZA65_RS22335	0.20	-1.7
4,830,751	+		DZA65_RS22335	0.20	-2.3
4,830,815	+		DZA65_RS22335	0.23	+0.3
4,830,815	+		DZA65_RS22335	0.23	-2.1
4,830,815	+		DZA65_RS22335	0.23	-1.8
4,830,816	-		DZA65_RS22335	0.23	-2.0
4,830,816	-		DZA65_RS22335	0.23	-2.8
4,830,816	-		DZA65_RS22335	0.23	-2.4
4,830,816	-		DZA65_RS22335	0.23	-2.0
4,830,816	-		DZA65_RS22335	0.23	-3.4
4,830,948	+		DZA65_RS22335	0.30	-3.2
4,830,948	+		DZA65_RS22335	0.30	-3.2
4,830,948	+		DZA65_RS22335	0.30	-1.7
4,830,948	+		DZA65_RS22335	0.30	-2.5
4,830,948	+		DZA65_RS22335	0.30	-3.4
4,830,949	-		DZA65_RS22335	0.30	-3.7
4,830,949	-		DZA65_RS22335	0.30	-2.8
4,830,993	+		DZA65_RS22335	0.33	-1.0
4,830,993	+		DZA65_RS22335	0.33	-2.6
4,830,993	+		DZA65_RS22335	0.33	-2.0
4,830,994	-		DZA65_RS22335	0.33	-2.4
4,830,994	-		DZA65_RS22335	0.33	-1.0
4,830,994	-		DZA65_RS22335	0.33	-2.7
4,831,067	+		DZA65_RS22335	0.37	+1.0
4,831,068	-		DZA65_RS22335	0.37	-0.8
4,831,068	-		DZA65_RS22335	0.37	-0.1
4,831,068	-		DZA65_RS22335	0.37	-2.7
4,831,073	+		DZA65_RS22335	0.37	-1.8
4,831,073	+		DZA65_RS22335	0.37	+0.0
4,831,101	+		DZA65_RS22335	0.38	-0.2
4,831,167	+		DZA65_RS22335	0.42	-4.2
4,831,191	+		DZA65_RS22335	0.43	-2.5
4,831,192	-		DZA65_RS22335	0.43	-2.3
4,831,192	-		DZA65_RS22335	0.43	-1.4
4,831,192	-		DZA65_RS22335	0.43	-2.5
4,831,211	+		DZA65_RS22335	0.44	-1.1
4,831,211	+		DZA65_RS22335	0.44	-2.7
4,831,211	+		DZA65_RS22335	0.44	-2.5
4,831,211	+		DZA65_RS22335	0.44	-2.6
4,831,211	+		DZA65_RS22335	0.44	-2.7
4,831,211	+		DZA65_RS22335	0.44	-1.4
4,831,211	+		DZA65_RS22335	0.44	-1.1
4,831,211	+		DZA65_RS22335	0.44	-2.8
4,831,211	+		DZA65_RS22335	0.44	-3.4
4,831,211	+		DZA65_RS22335	0.44	-0.7
4,831,211	+		DZA65_RS22335	0.44	-2.5
4,831,211	+		DZA65_RS22335	0.44	-1.7
4,831,211	+		DZA65_RS22335	0.44	-1.1
4,831,211	+		DZA65_RS22335	0.44	-3.1
4,831,212	-		DZA65_RS22335	0.44	-3.3
4,831,212	-		DZA65_RS22335	0.44	-3.1
4,831,212	-		DZA65_RS22335	0.44	-1.1
4,831,212	-		DZA65_RS22335	0.44	-2.4
4,831,212	-		DZA65_RS22335	0.44	-1.2
4,831,212	-				-0.2
4,831,212	-		DZA65_RS22335	0.44	-2.0
4,831,212	-		DZA65_RS22335	0.44	-1.1
4,831,227	+		DZA65_RS22335	0.45	-4.1
4,831,228	-		DZA65_RS22335	0.45	-3.7
4,831,228	-		DZA65_RS22335	0.45	-2.4
4,831,228	-		DZA65_RS22335	0.45	-1.0
4,831,236	+		DZA65_RS22335	0.46	-2.0
4,831,236	+		DZA65_RS22335	0.46	-0.1
4,831,238	+		DZA65_RS22335	0.46	-3.7
4,831,238	+		DZA65_RS22335	0.46	-1.3
4,831,238	+		DZA65_RS22335	0.46	-0.7
4,831,238	+		DZA65_RS22335	0.46	-2.5
4,831,238	+		DZA65_RS22335	0.46	-2.9
4,831,238	+		DZA65_RS22335	0.46	-3.4
4,831,238	+		DZA65_RS22335	0.46	-1.5
4,831,239	-		DZA65_RS22335	0.46	-2.8
4,831,239	-		DZA65_RS22335	0.46	-3.2
4,831,239	-		DZA65_RS22335	0.46	-3.8
4,831,239	-		DZA65_RS22335	0.46	-2.7
4,831,239	-		DZA65_RS22335	0.46	-0.1
4,831,239	-		DZA65_RS22335	0.46	-1.5
4,831,239	-		DZA65_RS22335	0.46	-1.5
4,831,239	-		DZA65_RS22335	0.46	-2.7
4,831,239	-		DZA65_RS22335	0.46	+0.8
4,831,239	-		DZA65_RS22335	0.46	-0.7
4,831,257	+		DZA65_RS22335	0.47	-3.1
4,831,257	+		DZA65_RS22335	0.47	-2.1
4,831,257	+		DZA65_RS22335	0.47	-1.6
4,831,258	-		DZA65_RS22335	0.47	-1.0
4,831,258	-		DZA65_RS22335	0.47	-1.1
4,831,266	+		DZA65_RS22335	0.47	-3.9
4,831,266	+		DZA65_RS22335	0.47	-0.8
4,831,266	+		DZA65_RS22335	0.47	-1.8
4,831,266	+		DZA65_RS22335	0.47	+0.8
4,831,266	+		DZA65_RS22335	0.47	-2.8
4,831,266	+		DZA65_RS22335	0.47	-3.0
4,831,266	+		DZA65_RS22335	0.47	-1.5
4,831,266	+		DZA65_RS22335	0.47	-2.4
4,831,266	+		DZA65_RS22335	0.47	-1.2
4,831,266	+		DZA65_RS22335	0.47	-0.5
4,831,266	+		DZA65_RS22335	0.47	-1.8
4,831,267	-		DZA65_RS22335	0.47	-3.7
4,831,267	-		DZA65_RS22335	0.47	-2.1
4,831,267	-		DZA65_RS22335	0.47	-2.8
4,831,267	-		DZA65_RS22335	0.47	-2.4
4,831,267	-		DZA65_RS22335	0.47	-1.7
4,831,267	-		DZA65_RS22335	0.47	-2.6
4,831,267	-		DZA65_RS22335	0.47	-3.6
4,831,267	-		DZA65_RS22335	0.47	-2.3
4,831,267	-		DZA65_RS22335	0.47	-1.8
4,831,267	-				-1.0
4,831,267	-		DZA65_RS22335	0.47	-3.9
4,831,292	+		DZA65_RS22335	0.49	+0.0
4,831,292	+		DZA65_RS22335	0.49	-2.4
4,831,292	+		DZA65_RS22335	0.49	-3.2
4,831,292	+		DZA65_RS22335	0.49	-2.0
4,831,293	-		DZA65_RS22335	0.49	-1.0
4,831,293	-		DZA65_RS22335	0.49	-2.4
4,831,293	-		DZA65_RS22335	0.49	+0.4
4,831,431	+		DZA65_RS22335	0.56	-0.2
4,831,475	+		DZA65_RS22335	0.58	-1.2
4,831,475	+		DZA65_RS22335	0.58	-2.8
4,831,475	+		DZA65_RS22335	0.58	+0.0
4,831,475	+		DZA65_RS22335	0.58	-1.0
4,831,475	+		DZA65_RS22335	0.58	+0.1
4,831,475	+				-1.5
4,831,475	+		DZA65_RS22335	0.58	-3.2
4,831,475	+		DZA65_RS22335	0.58	-2.8
4,831,475	+		DZA65_RS22335	0.58	-2.0
4,831,476	-		DZA65_RS22335	0.59	-0.5
4,831,476	-		DZA65_RS22335	0.59	-2.6
4,831,476	-		DZA65_RS22335	0.59	-2.4
4,831,476	-		DZA65_RS22335	0.59	-0.1
4,831,476	-		DZA65_RS22335	0.59	-2.1
4,831,476	-		DZA65_RS22335	0.59	-2.5
4,831,476	-		DZA65_RS22335	0.59	-2.1
4,831,556	+		DZA65_RS22335	0.63	-2.7
4,831,556	+		DZA65_RS22335	0.63	+0.3
4,831,556	+		DZA65_RS22335	0.63	-1.7
4,831,556	+		DZA65_RS22335	0.63	-3.6
4,831,556	+		DZA65_RS22335	0.63	-2.5
4,831,556	+		DZA65_RS22335	0.63	-3.8
4,831,557	-		DZA65_RS22335	0.63	-3.7
4,831,557	-		DZA65_RS22335	0.63	-2.0
4,831,622	+		DZA65_RS22335	0.66	-1.5
4,831,622	+				-0.7
4,831,622	+		DZA65_RS22335	0.66	-3.0
4,831,623	-		DZA65_RS22335	0.66	-3.0
4,831,623	-		DZA65_RS22335	0.66	-0.2
4,831,629	+		DZA65_RS22335	0.67	-1.0
4,831,629	+		DZA65_RS22335	0.67	-1.3
4,831,630	-		DZA65_RS22335	0.67	-2.7
4,831,689	+		DZA65_RS22335	0.70	-1.5
4,831,689	+		DZA65_RS22335	0.70	-2.9
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