Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21515

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,653,627	+		DZA65_RS21510	0.22	-0.3
4,653,715	+		DZA65_RS21510	0.31	+1.0
4,653,715	+		DZA65_RS21510	0.31	-1.3
4,653,715	+		DZA65_RS21510	0.31	+0.7
4,653,715	+		DZA65_RS21510	0.31	-0.8
4,653,715	+		DZA65_RS21510	0.31	-2.2
4,653,715	+		DZA65_RS21510	0.31	-1.0
4,653,716	-		DZA65_RS21510	0.31	-0.4
4,653,716	-		DZA65_RS21510	0.31	-0.6
4,653,716	-		DZA65_RS21510	0.31	+0.3
4,653,719	+		DZA65_RS21510	0.32	-0.4
4,653,719	+		DZA65_RS21510	0.32	+0.4
4,653,719	+		DZA65_RS21510	0.32	+0.5
4,653,720	-		DZA65_RS21510	0.32	-0.5
4,653,720	-		DZA65_RS21510	0.32	-0.7
4,653,720	-		DZA65_RS21510	0.32	+1.0
4,653,720	-		DZA65_RS21510	0.32	-0.6
4,653,734	+		DZA65_RS21510	0.33	-0.1
4,653,848	+		DZA65_RS21510	0.46	+0.9
4,653,848	+		DZA65_RS21510	0.46	+0.7
4,653,848	+		DZA65_RS21510	0.46	-0.8
4,653,852	+		DZA65_RS21510	0.46	-0.9
4,653,852	+		DZA65_RS21510	0.46	+0.2
4,653,852	+		DZA65_RS21510	0.46	-1.5
4,653,852	+		DZA65_RS21510	0.46	+0.1
4,653,852	+		DZA65_RS21510	0.46	+0.7
4,653,852	+		DZA65_RS21510	0.46	+0.3
4,653,852	+		DZA65_RS21510	0.46	+0.6
4,653,852	+		DZA65_RS21510	0.46	-0.9
4,653,852	+		DZA65_RS21510	0.46	-1.4
4,653,852	+		DZA65_RS21510	0.46	-0.1
4,653,852	+		DZA65_RS21510	0.46	-0.0
4,653,852	+		DZA65_RS21510	0.46	+0.0
4,653,853	-		DZA65_RS21510	0.46	-0.6
4,653,853	-		DZA65_RS21510	0.46	+1.6
4,653,853	-		DZA65_RS21510	0.46	+0.9
4,653,853	-		DZA65_RS21510	0.46	+1.3
4,653,853	-		DZA65_RS21510	0.46	+1.0
4,653,853	-		DZA65_RS21510	0.46	+0.3
4,653,853	-		DZA65_RS21510	0.46	-0.1
4,653,854	+		DZA65_RS21510	0.46	+1.0
4,653,879	+		DZA65_RS21510	0.49	+0.1
4,653,879	+		DZA65_RS21510	0.49	-0.4
4,653,879	+		DZA65_RS21510	0.49	+0.7
4,653,879	+		DZA65_RS21510	0.49	-0.0
4,653,879	+		DZA65_RS21510	0.49	+0.9
4,653,879	+		DZA65_RS21510	0.49	+0.6
4,653,879	+		DZA65_RS21510	0.49	+0.4
4,653,879	+		DZA65_RS21510	0.49	-1.3
4,653,879	+		DZA65_RS21510	0.49	-0.0
4,653,879	+		DZA65_RS21510	0.49	-1.4
4,653,880	-		DZA65_RS21510	0.49	+0.3
4,653,880	-		DZA65_RS21510	0.49	-1.4
4,653,880	-		DZA65_RS21510	0.49	+0.4
4,653,880	-		DZA65_RS21510	0.49	-0.8
4,653,942	+				-0.3
4,653,943	-		DZA65_RS21510	0.56	-1.2
4,653,945	+		DZA65_RS21510	0.56	-0.1
4,653,945	+		DZA65_RS21510	0.56	-1.5
4,653,945	+		DZA65_RS21510	0.56	-0.1
4,653,945	+		DZA65_RS21510	0.56	-0.3
4,653,946	-		DZA65_RS21510	0.56	-0.3
4,653,946	-		DZA65_RS21510	0.56	+0.8
4,653,946	-		DZA65_RS21510	0.56	+0.9
4,653,946	-		DZA65_RS21510	0.56	-1.7
4,653,946	-		DZA65_RS21510	0.56	-1.4
4,654,118	+		DZA65_RS21510	0.75	+0.2
4,654,118	+		DZA65_RS21510	0.75	-0.3
4,654,119	-		DZA65_RS21510	0.75	-1.3
4,654,119	-		DZA65_RS21510	0.75	-1.0
4,654,171	-		DZA65_RS21510	0.81	+0.7
4,654,171	-		DZA65_RS21510	0.81	-0.5
4,654,171	-		DZA65_RS21510	0.81	+1.3
4,654,171	-		DZA65_RS21510	0.81	-0.3
4,654,178	+		DZA65_RS21510	0.82	-0.2
4,654,178	+		DZA65_RS21510	0.82	-1.3
4,654,178	+		DZA65_RS21510	0.82	+0.3
4,654,178	+		DZA65_RS21510	0.82	-0.9
4,654,178	+		DZA65_RS21510	0.82	+1.3
4,654,179	-		DZA65_RS21510	0.82	-0.2
4,654,179	-		DZA65_RS21510	0.82	-0.0
4,654,179	-		DZA65_RS21510	0.82	-0.7
4,654,179	-		DZA65_RS21510	0.82	-0.4
4,654,179	-		DZA65_RS21510	0.82	+0.5
4,654,199	+		DZA65_RS21510	0.84	-2.9
4,654,199	+		DZA65_RS21510	0.84	-0.2
4,654,199	+		DZA65_RS21510	0.84	+3.0
4,654,199	+		DZA65_RS21510	0.84	+0.4
4,654,334	-				-1.3
4,654,344	+				-0.4
4,654,345	-				+0.3
4,654,382	-				+2.0
4,654,463	+				-0.5
4,654,463	+				-2.5
4,654,463	+				+0.1
4,654,463	+				+0.9
4,654,464	-				-0.9
4,654,464	-				-0.3
4,654,464	-				-0.7
4,654,465	+				+0.5
4,654,465	+				+0.3
4,654,465	+				-1.4
4,654,465	+				+0.1
4,654,465	+				+1.3
4,654,465	+				-0.5
4,654,466	-				-0.5
4,654,466	-				-0.2
4,654,466	-				+0.0
4,654,466	-				-0.8
4,654,466	-				-0.9
4,654,466	-				+0.8
4,654,466	-				-0.8
4,654,466	-				+0.0
4,654,466	-				+0.5
4,654,466	-				-0.2
4,654,499	+				-0.7
4,654,499	+				+0.2
4,654,499	+				-1.2
4,654,500	-				+0.7
4,654,500	-				+1.7
4,654,500	-				+0.6
4,654,500	-				-0.5
4,654,505	+				+1.0
4,654,505	+				-0.8
4,654,506	-				-0.4
4,654,512	+				-0.1
4,654,512	+				-1.3
4,654,512	+				-0.3
4,654,513	-				+0.1
4,654,513	-				-0.8
4,654,513	-				-0.0
4,654,513	-				-1.0
4,654,513	-				-0.7
4,654,513	-				-0.1
4,654,517	+				+0.4
4,654,517	+				+0.2
4,654,517	+				-0.1
4,654,518	-				-0.2
4,654,518	-				+0.8
4,654,518	-				-1.1
4,654,518	-				-2.3
4,654,535	+				-0.3
4,654,535	+				-1.2
4,654,535	+				+0.6
4,654,535	+				-1.0
4,654,535	+				+0.6
4,654,535	+				-0.9
4,654,535	+				+0.4
4,654,535	+				-2.4
4,654,536	-				+0.8
4,654,536	-				-0.5
4,654,536	-				+1.9
4,654,539	+				+1.0
4,654,539	+				+0.1
4,654,539	+				+0.1
4,654,539	+				+0.6
4,654,539	+				-0.3
4,654,539	+				-0.3
4,654,539	+				-1.0
4,654,539	+				-0.4
4,654,539	+				-0.6
4,654,540	-				-1.5
4,654,540	-				-0.1
4,654,540	-				-0.4
4,654,540	-				+0.1
4,654,540	-				-2.3
4,654,540	-				-1.0
4,654,540	-				-1.0
4,654,540	-				+1.0
4,654,540	-				+0.2
4,654,540	-				-0.3
4,654,540	-				-0.1
4,654,540	-				+0.1
4,654,540	-				-0.7
4,654,592	+		DZA65_RS21515	0.18	-0.9
4,654,592	+		DZA65_RS21515	0.18	+0.2
4,654,592	+		DZA65_RS21515	0.18	-0.3
4,654,592	+		DZA65_RS21515	0.18	+0.3
4,654,592	+		DZA65_RS21515	0.18	-0.1
4,654,593	-		DZA65_RS21515	0.18	-0.5
4,654,593	-		DZA65_RS21515	0.18	-1.5
4,654,593	-		DZA65_RS21515	0.18	-0.1
4,654,593	-		DZA65_RS21515	0.18	+1.9
4,654,593	-		DZA65_RS21515	0.18	+0.5
4,654,593	-		DZA65_RS21515	0.18	-0.0
4,654,783	-		DZA65_RS21515	0.57	+2.9
4,654,783	-		DZA65_RS21515	0.57	-1.5
4,654,802	-		DZA65_RS21515	0.61	-0.8
4,654,802	-		DZA65_RS21515	0.61	-0.7
4,654,938	+		DZA65_RS21515	0.89	+0.1
4,654,938	+		DZA65_RS21515	0.89	-1.4
4,654,938	+		DZA65_RS21515	0.89	-1.4
4,654,938	+		DZA65_RS21515	0.89	-1.1
4,654,938	+		DZA65_RS21515	0.89	-0.4
4,654,939	-		DZA65_RS21515	0.89	-0.7
4,654,939	-		DZA65_RS21515	0.89	+0.6
4,654,939	-		DZA65_RS21515	0.89	-0.9
4,654,939	-		DZA65_RS21515	0.89	-1.3
4,654,939	-		DZA65_RS21515	0.89	-0.4
4,654,990	-				+0.3
4,655,059	-				+0.9
4,655,077	+				+2.3
4,655,078	-				-0.3
4,655,108	+		DZA65_RS21520	0.21	+0.1
4,655,126	+		DZA65_RS21520	0.28	-0.4
4,655,126	+		DZA65_RS21520	0.28	-0.3
4,655,126	+		DZA65_RS21520	0.28	-1.8
4,655,127	-		DZA65_RS21520	0.29	-0.7
4,655,170	+		DZA65_RS21520	0.47	+0.8
4,655,170	+		DZA65_RS21520	0.47	-1.3
4,655,170	+				-0.3
4,655,194	+		DZA65_RS21520	0.56	-0.0
4,655,194	+		DZA65_RS21520	0.56	+0.0
4,655,194	+		DZA65_RS21520	0.56	-0.5
4,655,194	+		DZA65_RS21520	0.56	-2.8
4,655,194	+		DZA65_RS21520	0.56	-0.5
4,655,194	+		DZA65_RS21520	0.56	-0.7
4,655,194	+		DZA65_RS21520	0.56	-2.0
4,655,194	+		DZA65_RS21520	0.56	+0.9
4,655,194	+		DZA65_RS21520	0.56	-0.3
4,655,194	+		DZA65_RS21520	0.56	-2.4
4,655,194	+		DZA65_RS21520	0.56	-1.0
4,655,194	+		DZA65_RS21520	0.56	-0.3
4,655,194	+		DZA65_RS21520	0.56	-2.3
4,655,194	+		DZA65_RS21520	0.56	-1.2
4,655,194	+		DZA65_RS21520	0.56	-0.6
4,655,194	+		DZA65_RS21520	0.56	+0.5
4,655,194	+		DZA65_RS21520	0.56	-1.7
4,655,194	+		DZA65_RS21520	0.56	+0.3
4,655,194	+		DZA65_RS21520	0.56	-1.7
4,655,194	+		DZA65_RS21520	0.56	+1.3
4,655,194	+		DZA65_RS21520	0.56	-0.7
4,655,194	+		DZA65_RS21520	0.56	-0.3
4,655,194	+		DZA65_RS21520	0.56	+0.6
4,655,194	+		DZA65_RS21520	0.56	+0.2
4,655,195	-		DZA65_RS21520	0.57	+0.3
4,655,195	-		DZA65_RS21520	0.57	-1.7
4,655,195	-		DZA65_RS21520	0.57	-0.7
4,655,195	-		DZA65_RS21520	0.57	+0.6
4,655,195	-		DZA65_RS21520	0.57	+0.1
4,655,195	-		DZA65_RS21520	0.57	-0.8
4,655,195	-		DZA65_RS21520	0.57	-0.1
4,655,195	-		DZA65_RS21520	0.57	+1.3
4,655,195	-		DZA65_RS21520	0.57	+0.0
4,655,195	-		DZA65_RS21520	0.57	-1.4
4,655,195	-		DZA65_RS21520	0.57	-0.6
4,655,195	-		DZA65_RS21520	0.57	-0.5
4,655,195	-		DZA65_RS21520	0.57	+0.5
4,655,195	-		DZA65_RS21520	0.57	-0.3
4,655,195	-		DZA65_RS21520	0.57	-0.1
4,655,195	-		DZA65_RS21520	0.57	-0.9
4,655,195	-		DZA65_RS21520	0.57	-0.6
4,655,195	-		DZA65_RS21520	0.57	-1.9
4,655,299	+				+0.3
4,655,299	+				+1.9
4,655,299	+				-0.8
4,655,299	+				-0.3
4,655,299	+				-0.5
4,655,300	-				-1.0
4,655,300	-				+0.5
4,655,317	+				-0.3
4,655,329	+				-0.3
4,655,330	-				-0.0
4,655,349	+				-1.2
4,655,349	+				+0.1
4,655,349	+				-0.7
4,655,349	+				+0.2
4,655,349	+				+0.8
4,655,349	+				-0.3
4,655,349	+				+1.3
4,655,349	+				-1.1
4,655,350	-				-0.0
4,655,350	-				-0.6
4,655,350	-				+0.1
4,655,350	-				+0.3
4,655,350	-				+0.3
4,655,350	-				+0.1
4,655,350	-				-0.2
4,655,350	-				-0.3
4,655,350	-				-0.7
4,655,350	-				-0.3
4,655,350	-				+0.3
4,655,398	+				-2.3
4,655,399	-				+0.0
4,655,399	-				+0.3
4,655,406	+				+0.4
4,655,407	-				+0.1
4,655,407	-				+0.3
4,655,407	-				+0.4
4,655,409	+				-0.0
4,655,409	+				-0.1
4,655,409	+				+0.4
4,655,409	+				-0.3
4,655,409	+				-1.3
4,655,409	+				+0.4
4,655,409	+				-0.3
4,655,409	+				+0.7
4,655,409	+				+1.6
4,655,409	+				-0.5
4,655,409	+				-0.7
4,655,409	+				-1.8
4,655,409	+				+0.1
4,655,410	-				+0.1
4,655,410	-				-0.2
4,655,410	-				+0.2
4,655,410	-				-0.7
4,655,410	-				-0.6
4,655,410	-				-0.1
4,655,410	-				-0.1
4,655,467	-				-0.3
4,655,467	-				+0.3
4,655,467	-				+0.3
4,655,484	+				+0.6
4,655,484	+				+1.9
4,655,484	+				+0.5
4,655,484	+				-0.2
4,655,485	-				-0.5
4,655,485	-				-0.5
4,655,485	-				+2.3
4,655,485	-				+0.3
4,655,485	-				+0.6
4,655,488	+				-2.5
4,655,488	+				-1.3
4,655,488	+				-2.2
4,655,489	-				-0.0
4,655,522	-				+1.5
4,655,593	+				+0.4
4,655,603	+				+0.1
4,655,604	-				+0.3
4,655,618	+				-0.6
4,655,618	+				-0.9
4,655,618	+				+1.3
4,655,619	-				-0.8
4,655,680	-				+0.5
4,655,764	+				+1.1
4,655,764	+				-1.0
4,655,765	-				-1.3
4,655,765	-				-0.9
4,655,765	-				-0.7
4,655,827	+				-1.2
4,655,827	+				-0.7
4,655,827	+				+0.6
4,655,828	-				-1.7
4,655,828	-				+1.3
4,655,860	+				-1.3
4,655,860	+				-0.5
4,655,861	-				-0.3
4,655,861	-				-0.2
4,655,865	+				-0.3
4,655,865	+				-0.4
4,655,865	+				-0.2
4,655,865	+				+0.1
4,655,865	+				-0.4
4,655,865	+				+0.6
4,655,866	-				-0.9
4,655,866	-				+0.8
4,655,866	-				+0.7
4,655,884	+				-2.0
4,655,884	+				-0.9
4,655,885	-				-0.5
4,655,885	-				-2.9
4,655,885	-				+2.1