Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21500

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,650,400	+				-2.0
4,650,400	+				-1.7
4,650,400	+				-2.3
4,650,400	+				-2.4
4,650,400	+				-0.0
4,650,400	+				-0.3
4,650,400	+				-1.3
4,650,400	+				-0.7
4,650,799	+		DZA65_RS21495	0.45	+0.1
4,650,799	+		DZA65_RS21495	0.45	-0.8
4,650,799	+		DZA65_RS21495	0.45	-2.0
4,650,799	+		DZA65_RS21495	0.45	-1.4
4,650,799	+		DZA65_RS21495	0.45	-0.5
4,650,799	+		DZA65_RS21495	0.45	-0.4
4,650,799	+		DZA65_RS21495	0.45	-0.1
4,650,799	+		DZA65_RS21495	0.45	-2.3
4,650,799	+		DZA65_RS21495	0.45	-1.3
4,650,800	-		DZA65_RS21495	0.45	-1.5
4,650,800	-		DZA65_RS21495	0.45	+0.3
4,650,800	-		DZA65_RS21495	0.45	-0.7
4,650,800	-		DZA65_RS21495	0.45	-1.8
4,650,800	-		DZA65_RS21495	0.45	-0.8
4,650,882	+		DZA65_RS21495	0.53	-0.5
4,650,906	+		DZA65_RS21495	0.56	-1.9
4,650,942	+		DZA65_RS21495	0.60	-1.8
4,650,942	+		DZA65_RS21495	0.60	-1.0
4,650,942	+		DZA65_RS21495	0.60	-0.6
4,650,942	+		DZA65_RS21495	0.60	+0.1
4,650,942	+		DZA65_RS21495	0.60	-2.5
4,650,942	+		DZA65_RS21495	0.60	-0.6
4,650,943	-		DZA65_RS21495	0.60	+0.4
4,650,943	-		DZA65_RS21495	0.60	-1.5
4,650,943	-		DZA65_RS21495	0.60	-1.3
4,650,943	-		DZA65_RS21495	0.60	+0.7
4,651,212	+		DZA65_RS21495	0.89	-0.3
4,651,213	-		DZA65_RS21495	0.89	-1.3
4,651,225	+				-1.0
4,651,236	+				-1.3
4,651,340	+				+1.3
4,651,341	-				-0.8
4,651,349	+				+0.4
4,651,350	-				-0.4
4,651,350	-				-1.3
4,651,350	-				-0.9
4,651,350	-				-1.0
4,651,350	-				+0.8
4,651,385	-				+1.1
4,651,394	-				+0.1
4,651,413	+				-0.0
4,651,413	+				-0.5
4,651,413	+				+0.7
4,651,413	+				+1.3
4,651,413	+				-0.2
4,651,413	+				-0.8
4,651,414	-				-0.6
4,651,414	-				-1.0
4,651,414	-				-0.8
4,651,420	-				+0.2
4,651,420	-				+0.6
4,651,479	+		DZA65_RS21500	0.15	-0.2
4,651,479	+		DZA65_RS21500	0.15	-1.0
4,651,480	-		DZA65_RS21500	0.15	-0.8
4,651,503	+		DZA65_RS21500	0.19	-0.5
4,651,504	-		DZA65_RS21500	0.20	-0.1
4,651,504	-		DZA65_RS21500	0.20	-1.5
4,651,504	-		DZA65_RS21500	0.20	+0.6
4,651,514	+		DZA65_RS21500	0.21	+0.3
4,651,514	+		DZA65_RS21500	0.21	+0.6
4,651,514	+		DZA65_RS21500	0.21	-0.5
4,651,514	+		DZA65_RS21500	0.21	-2.6
4,651,515	-		DZA65_RS21500	0.22	+0.4
4,651,515	-		DZA65_RS21500	0.22	-1.4
4,651,515	-		DZA65_RS21500	0.22	-1.8
4,651,515	-		DZA65_RS21500	0.22	-1.0
4,651,515	-		DZA65_RS21500	0.22	+0.6
4,651,784	+		DZA65_RS21500	0.72	-0.9
4,651,819	+		DZA65_RS21500	0.79	-1.2
4,651,827	+		DZA65_RS21500	0.80	-0.5
4,651,828	-		DZA65_RS21500	0.81	-0.9
4,651,828	-		DZA65_RS21500	0.81	+0.7
4,651,861	+		DZA65_RS21500	0.87	+0.5
4,651,873	+		DZA65_RS21500	0.89	+0.1
4,651,873	+		DZA65_RS21500	0.89	-1.4
4,651,873	+		DZA65_RS21500	0.89	+0.1
4,651,874	-		DZA65_RS21500	0.89	-0.5
4,651,874	-		DZA65_RS21500	0.89	-1.1
4,651,883	+				-0.7
4,651,883	+				+0.5
4,651,883	+				-1.4
4,651,883	+				+0.1
4,651,883	+				-0.1
4,651,883	+				-0.4
4,651,883	+				-0.7
4,651,884	-				+0.5
4,651,884	-				-1.2
4,651,884	-				-0.1
4,651,884	-				+0.4
4,651,884	-				+0.3
4,651,884	-				-1.1
4,651,884	-				+0.5
4,651,884	-				+0.2
4,651,884	-				+0.6
4,651,884	-				-0.0
4,651,914	+				+0.3
4,651,915	-				-0.4
4,651,928	+				-0.6
4,651,929	-				-2.4
4,651,939	+				-0.9
4,651,939	+				-2.2
4,651,939	+				-0.7
4,651,939	+				+0.3
4,651,939	+				+0.7
4,651,939	+				-0.7
4,651,940	-				+1.1
4,651,940	-				-0.8
4,651,940	-				+0.3
4,651,940	-				-0.3
4,651,940	-				-0.6
4,651,940	-				-1.2
4,651,940	-				-0.3
4,651,940	-				-0.8
4,651,940	-				+0.2
4,651,940	-				+0.8
4,651,940	-				-0.3
4,651,965	+				+1.0
4,651,965	+				+0.2
4,651,965	+				+0.3
4,651,966	-				-1.7
4,651,966	-				+0.0
4,651,981	+				-1.3
4,651,981	+				+0.7
4,651,981	+				-1.8
4,651,981	+				+0.8
4,651,981	+				-0.1
4,651,981	+				-1.0
4,651,981	+				+0.3
4,651,982	-				-0.9
4,651,982	-				-0.4
4,651,982	-				-0.5
4,651,985	+				-0.5
4,651,985	+				-1.7
4,651,985	+				+0.3
4,651,985	+				-0.3
4,651,985	+				+0.3
4,651,985	+				-2.0
4,651,985	+				-3.0
4,651,985	+				+0.0
4,651,985	+				-0.9
4,651,985	+				-0.4
4,651,985	+				-0.0
4,651,985	+				-0.5
4,651,985	+				-0.2
4,651,985	+				-0.8
4,651,985	+				+0.1
4,651,985	+				-1.3
4,651,985	+				+0.7
4,651,985	+				+0.3
4,651,985	+				-0.5
4,651,985	+				+0.9
4,651,986	-				+0.2
4,651,986	-				-0.4
4,651,986	-				-0.0
4,651,986	-				-0.3
4,651,986	-				-1.9
4,651,986	-				-0.6
4,651,986	-				+0.5
4,651,986	-				+0.7
4,651,986	-				-0.4
4,651,986	-				-0.0
4,651,986	-				-1.0
4,651,986	-				-0.3
4,652,211	-		DZA65_RS21505	0.20	-2.0
4,652,236	+		DZA65_RS21505	0.22	-1.0
4,652,610	+		DZA65_RS21505	0.50	+0.0
4,652,610	+		DZA65_RS21505	0.50	-0.1
4,652,611	-		DZA65_RS21505	0.50	-0.3
4,652,611	-		DZA65_RS21505	0.50	+0.0
4,652,656	+		DZA65_RS21505	0.54	+0.5
4,652,656	+		DZA65_RS21505	0.54	-2.0
4,652,656	+		DZA65_RS21505	0.54	-0.6
4,652,656	+		DZA65_RS21505	0.54	+0.3
4,652,656	+		DZA65_RS21505	0.54	-0.9
4,652,657	-		DZA65_RS21505	0.54	+0.6
4,652,657	-		DZA65_RS21505	0.54	-1.7
4,652,657	-		DZA65_RS21505	0.54	+0.1
4,652,657	-		DZA65_RS21505	0.54	+0.4
4,652,657	-		DZA65_RS21505	0.54	+1.0
4,652,657	-		DZA65_RS21505	0.54	+0.0
4,652,804	-		DZA65_RS21505	0.65	+0.1
4,652,804	-		DZA65_RS21505	0.65	-0.1
4,652,804	-		DZA65_RS21505	0.65	-1.0
4,652,804	-		DZA65_RS21505	0.65	-0.6
4,652,804	-		DZA65_RS21505	0.65	+0.7