Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19920

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,310,366	+		DZA65_RS19915	0.61	-2.3
4,310,368	+		DZA65_RS19915	0.61	+0.8
4,310,368	+		DZA65_RS19915	0.61	+1.4
4,310,368	+		DZA65_RS19915	0.61	+1.7
4,310,369	-		DZA65_RS19915	0.61	+0.3
4,310,398	+		DZA65_RS19915	0.64	+0.4
4,310,398	+		DZA65_RS19915	0.64	+0.9
4,310,398	+		DZA65_RS19915	0.64	-1.2
4,310,399	-		DZA65_RS19915	0.64	-1.2
4,310,399	-		DZA65_RS19915	0.64	+0.5
4,310,399	-		DZA65_RS19915	0.64	-1.1
4,310,692	-		DZA65_RS19915	0.85	+0.8
4,310,722	+		DZA65_RS19915	0.87	+0.5
4,310,722	+		DZA65_RS19915	0.87	+0.1
4,310,722	+		DZA65_RS19915	0.87	-0.6
4,310,722	+		DZA65_RS19915	0.87	-0.2
4,310,722	+		DZA65_RS19915	0.87	+0.5
4,310,723	-		DZA65_RS19915	0.87	+0.9
4,310,723	-		DZA65_RS19915	0.87	-0.6
4,310,737	+		DZA65_RS19915	0.88	-0.7
4,310,753	+		DZA65_RS19915	0.89	+0.4
4,310,753	+		DZA65_RS19915	0.89	-1.8
4,310,753	+		DZA65_RS19915	0.89	+0.4
4,310,753	+		DZA65_RS19915	0.89	+0.9
4,310,780	+				-0.4
4,310,781	-				-0.2
4,310,788	+				+0.9
4,310,788	+				-0.2
4,310,789	-				-0.6
4,310,789	-				-0.6
4,310,812	+				+0.0
4,310,813	-				+1.4
4,310,813	-				-0.4
4,310,813	-				-0.5
4,310,852	+				-0.1
4,310,853	-				-0.3
4,310,853	-				-0.2
4,310,917	+				-0.0
4,310,917	+				-0.0
4,310,918	-				+0.5
4,310,936	+				-0.1
4,310,959	-				+0.9
4,310,963	+				-0.4
4,311,037	+				-0.9
4,311,038	-				-0.5
4,311,056	+				-0.5
4,311,056	+				+0.4
4,311,056	+				+0.7
4,311,056	+				-0.7
4,311,057	-				-0.0
4,311,057	-				-0.4
4,311,057	-				-0.6
4,311,092	+				-1.0
4,311,093	-				+0.2
4,311,114	+				+0.8
4,311,114	+				+0.5
4,311,114	+				-0.2
4,311,114	+				-0.4
4,311,114	+				-0.3
4,311,114	+				-0.8
4,311,114	+				+0.6
4,311,115	-				+0.5
4,311,115	-				-0.3
4,311,136	+				+0.1
4,311,136	+				-0.2
4,311,136	+				-1.0
4,311,136	+				-1.1
4,311,136	+				+0.5
4,311,136	+				-0.3
4,311,137	-				-0.5
4,311,137	-				-0.2
4,311,137	-				+0.5
4,311,137	-				-0.8
4,311,158	+				-1.6
4,311,158	+				-0.4
4,311,158	+				-0.2
4,311,159	-				-0.2
4,311,212	-				-0.1
4,311,212	-				+0.1
4,311,224	+				-0.3
4,311,225	-				-0.0
4,311,225	-				-0.3
4,311,225	-				-0.2
4,311,225	-				-0.1
4,311,225	-				+1.5
4,311,225	-				-1.4
4,311,236	+				+0.2
4,311,237	-				+1.2
4,311,237	-				-0.5
4,311,431	+		DZA65_RS19920	0.14	-0.1
4,311,431	+		DZA65_RS19920	0.14	+0.2
4,311,431	+		DZA65_RS19920	0.14	+0.1
4,311,431	+		DZA65_RS19920	0.14	+0.8
4,311,431	+		DZA65_RS19920	0.14	+0.0
4,311,431	+		DZA65_RS19920	0.14	-0.8
4,311,432	-		DZA65_RS19920	0.14	+0.3
4,311,432	-		DZA65_RS19920	0.14	-0.7
4,311,432	-				-0.8
4,311,432	-		DZA65_RS19920	0.14	-1.3
4,311,432	-		DZA65_RS19920	0.14	-0.6
4,311,435	+		DZA65_RS19920	0.14	+0.1
4,311,435	+		DZA65_RS19920	0.14	+0.1
4,311,435	+		DZA65_RS19920	0.14	-0.5
4,311,435	+		DZA65_RS19920	0.14	-0.1
4,311,435	+		DZA65_RS19920	0.14	-0.1
4,311,436	-		DZA65_RS19920	0.14	-0.8
4,311,436	-		DZA65_RS19920	0.14	+0.7
4,311,436	-		DZA65_RS19920	0.14	+0.2
4,311,436	-		DZA65_RS19920	0.14	-0.2
4,311,436	-		DZA65_RS19920	0.14	-1.1
4,311,436	-		DZA65_RS19920	0.14	+0.7
4,311,436	-		DZA65_RS19920	0.14	-0.7
4,311,436	-		DZA65_RS19920	0.14	-0.4
4,311,436	-		DZA65_RS19920	0.14	-1.1
4,311,441	-		DZA65_RS19920	0.15	+1.0
4,311,529	+		DZA65_RS19920	0.20	-1.2
4,311,530	-		DZA65_RS19920	0.20	-0.1
4,311,530	-		DZA65_RS19920	0.20	+1.5
4,311,682	+		DZA65_RS19920	0.30	+0.0
4,311,685	+		DZA65_RS19920	0.30	-0.1
4,311,685	+		DZA65_RS19920	0.30	+0.7
4,311,686	-		DZA65_RS19920	0.30	+0.3
4,311,686	-		DZA65_RS19920	0.30	-1.3
4,311,686	-		DZA65_RS19920	0.30	+1.2
4,311,686	-		DZA65_RS19920	0.30	+0.7
4,311,905	+		DZA65_RS19920	0.44	+0.5
4,311,906	-		DZA65_RS19920	0.44	+0.4
4,312,160	+		DZA65_RS19920	0.60	+0.8
4,312,160	+		DZA65_RS19920	0.60	-0.8
4,312,160	+		DZA65_RS19920	0.60	-0.6
4,312,160	+		DZA65_RS19920	0.60	-0.4
4,312,160	+		DZA65_RS19920	0.60	+1.8
4,312,160	+		DZA65_RS19920	0.60	-0.3
4,312,161	-		DZA65_RS19920	0.60	+0.9
4,312,161	-		DZA65_RS19920	0.60	+0.0
4,312,161	-		DZA65_RS19920	0.60	-0.5
4,312,408	+		DZA65_RS19920	0.76	+0.6
4,312,409	-		DZA65_RS19920	0.76	-1.8
4,312,414	+		DZA65_RS19920	0.76	+1.2
4,312,414	+		DZA65_RS19920	0.76	+0.0
4,312,415	-		DZA65_RS19920	0.77	-0.0
4,312,415	-		DZA65_RS19920	0.77	-0.2
4,312,415	-		DZA65_RS19920	0.77	-0.4
4,312,415	-		DZA65_RS19920	0.77	-0.5
4,312,422	-		DZA65_RS19920	0.77	+0.1
4,312,498	-		DZA65_RS19920	0.82	+0.2
4,312,603	+		DZA65_RS19920	0.88	+0.1
4,312,603	+		DZA65_RS19920	0.88	+0.3
4,312,604	-		DZA65_RS19920	0.89	+0.2
4,312,604	-		DZA65_RS19920	0.89	+1.0
4,312,604	-		DZA65_RS19920	0.89	+0.0
4,312,604	-		DZA65_RS19920	0.89	+0.4
4,312,628	+				-0.5
4,312,628	+				+0.7
4,312,629	-				+0.8
4,312,629	-				-0.5
4,312,724	+				+0.8
4,312,774	-				-0.3
4,312,821	-				-0.1
4,312,844	+				-0.4
4,312,844	+				+0.2
4,312,845	-				-0.2
4,312,944	-		DZA65_RS19925	0.10	-0.8
4,313,034	+		DZA65_RS19925	0.16	-2.6
4,313,034	+		DZA65_RS19925	0.16	-0.4
4,313,070	+		DZA65_RS19925	0.18	-0.7
4,313,070	+		DZA65_RS19925	0.18	-1.8
4,313,271	+		DZA65_RS19925	0.31	-0.9
4,313,271	+		DZA65_RS19925	0.31	-0.0
4,313,272	-		DZA65_RS19925	0.31	-0.6
4,313,272	-		DZA65_RS19925	0.31	-0.9
4,313,272	-		DZA65_RS19925	0.31	-1.5
4,313,272	-		DZA65_RS19925	0.31	-0.8
4,313,631	+		DZA65_RS19925	0.54	-0.4
4,313,631	+		DZA65_RS19925	0.54	-0.2
4,313,631	+		DZA65_RS19925	0.54	-2.1
4,313,632	-		DZA65_RS19925	0.54	-1.1
4,313,744	-		DZA65_RS19925	0.61	+1.2
4,313,744	-		DZA65_RS19925	0.61	-0.5