Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19620 and DZA65_RS19625 are separated by 127 nucleotides DZA65_RS19625 and DZA65_RS19630 are separated by 11 nucleotides DZA65_RS19630 and DZA65_RS19635 are separated by 104 nucleotides DZA65_RS19635 and DZA65_RS19640 overlap by 1 nucleotides
DZA65_RS19620: DZA65_RS19620 - deoxyribonuclease I, at 4,249,490 to 4,250,188
_RS19620
DZA65_RS19625: DZA65_RS19625 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 4,250,316 to 4,251,050
_RS19625
DZA65_RS19630: DZA65_RS19630 - glutathione synthase, at 4,251,062 to 4,252,015
_RS19630
DZA65_RS19635: DZA65_RS19635 - YqgE/AlgH family protein, at 4,252,120 to 4,252,683
_RS19635
DZA65_RS19640: DZA65_RS19640 - Holliday junction resolvase RuvX, at 4,252,683 to 4,253,114
_RS19640
Position (kb) 4251
4252
4253 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4250.162 kb on + strand at 4250.162 kb on + strand at 4250.162 kb on + strand at 4250.163 kb on - strand at 4250.163 kb on - strand at 4250.163 kb on - strand at 4250.163 kb on - strand at 4250.199 kb on + strand at 4250.199 kb on + strand at 4250.199 kb on + strand at 4250.199 kb on + strand at 4250.200 kb on - strand at 4250.202 kb on + strand at 4250.202 kb on + strand at 4250.202 kb on + strand at 4250.202 kb on + strand at 4250.202 kb on + strand at 4250.202 kb on + strand at 4250.203 kb on - strand at 4250.203 kb on - strand at 4250.203 kb on - strand at 4250.203 kb on - strand at 4250.203 kb on - strand at 4250.203 kb on - strand at 4250.203 kb on - strand at 4250.203 kb on - strand at 4250.203 kb on - strand at 4250.219 kb on + strand at 4250.219 kb on + strand at 4250.219 kb on + strand at 4250.220 kb on - strand at 4250.220 kb on - strand at 4250.220 kb on - strand at 4250.220 kb on - strand at 4250.220 kb on - strand at 4250.220 kb on - strand at 4250.221 kb on + strand at 4250.221 kb on + strand at 4250.221 kb on + strand at 4250.221 kb on + strand at 4250.221 kb on + strand at 4250.221 kb on + strand at 4250.221 kb on + strand at 4250.221 kb on + strand at 4250.222 kb on - strand at 4250.222 kb on - strand at 4250.222 kb on - strand at 4250.222 kb on - strand at 4250.222 kb on - strand at 4250.222 kb on - strand at 4250.300 kb on + strand at 4250.301 kb on - strand at 4250.301 kb on - strand at 4250.301 kb on - strand at 4250.301 kb on - strand at 4250.301 kb on - strand at 4250.301 kb on - strand at 4250.301 kb on - strand at 4250.312 kb on - strand at 4250.312 kb on - strand at 4250.323 kb on + strand at 4250.464 kb on + strand, within DZA65_RS19625 at 4250.464 kb on + strand, within DZA65_RS19625 at 4250.464 kb on + strand, within DZA65_RS19625 at 4250.465 kb on - strand, within DZA65_RS19625 at 4250.465 kb on - strand, within DZA65_RS19625 at 4250.488 kb on + strand, within DZA65_RS19625 at 4250.488 kb on + strand, within DZA65_RS19625 at 4250.514 kb on + strand, within DZA65_RS19625 at 4250.818 kb on + strand, within DZA65_RS19625 at 4250.955 kb on - strand, within DZA65_RS19625 at 4250.960 kb on + strand, within DZA65_RS19625 at 4250.960 kb on + strand, within DZA65_RS19625 at 4250.960 kb on + strand, within DZA65_RS19625 at 4250.960 kb on + strand, within DZA65_RS19625 at 4250.960 kb on + strand, within DZA65_RS19625 at 4250.961 kb on - strand, within DZA65_RS19625 at 4250.961 kb on - strand, within DZA65_RS19625 at 4250.988 kb on - strand at 4251.028 kb on + strand at 4251.028 kb on + strand at 4251.029 kb on - strand at 4251.029 kb on - strand at 4251.057 kb on + strand at 4251.057 kb on + strand at 4251.057 kb on + strand at 4251.058 kb on - strand at 4251.058 kb on - strand at 4251.058 kb on - strand at 4251.068 kb on - strand at 4251.170 kb on + strand, within DZA65_RS19630 at 4251.170 kb on + strand, within DZA65_RS19630 at 4251.170 kb on + strand, within DZA65_RS19630 at 4251.170 kb on + strand, within DZA65_RS19630 at 4251.170 kb on + strand, within DZA65_RS19630 at 4251.170 kb on + strand, within DZA65_RS19630 at 4251.170 kb on + strand, within DZA65_RS19630 at 4251.170 kb on + strand, within DZA65_RS19630 at 4251.170 kb on + strand, within DZA65_RS19630 at 4251.170 kb on + strand, within DZA65_RS19630 at 4251.171 kb on - strand, within DZA65_RS19630 at 4251.171 kb on - strand, within DZA65_RS19630 at 4251.171 kb on - strand, within DZA65_RS19630 at 4251.171 kb on - strand, within DZA65_RS19630 at 4251.171 kb on - strand, within DZA65_RS19630 at 4251.171 kb on - strand, within DZA65_RS19630 at 4251.171 kb on - strand, within DZA65_RS19630 at 4251.171 kb on - strand, within DZA65_RS19630 at 4251.192 kb on - strand, within DZA65_RS19630 at 4251.226 kb on + strand, within DZA65_RS19630 at 4251.248 kb on + strand, within DZA65_RS19630 at 4251.249 kb on - strand, within DZA65_RS19630 at 4251.306 kb on + strand, within DZA65_RS19630 at 4251.307 kb on - strand, within DZA65_RS19630 at 4251.307 kb on - strand, within DZA65_RS19630 at 4251.307 kb on - strand, within DZA65_RS19630 at 4251.307 kb on - strand, within DZA65_RS19630 at 4251.350 kb on + strand, within DZA65_RS19630 at 4251.350 kb on + strand, within DZA65_RS19630 at 4251.350 kb on + strand, within DZA65_RS19630 at 4251.350 kb on + strand, within DZA65_RS19630 at 4251.351 kb on - strand, within DZA65_RS19630 at 4251.351 kb on - strand, within DZA65_RS19630 at 4251.359 kb on + strand, within DZA65_RS19630 at 4251.359 kb on + strand, within DZA65_RS19630 at 4251.359 kb on + strand, within DZA65_RS19630 at 4251.359 kb on + strand, within DZA65_RS19630 at 4251.360 kb on - strand, within DZA65_RS19630 at 4251.360 kb on - strand, within DZA65_RS19630 at 4251.360 kb on - strand, within DZA65_RS19630 at 4251.360 kb on - strand, within DZA65_RS19630 at 4251.360 kb on - strand, within DZA65_RS19630 at 4251.360 kb on - strand, within DZA65_RS19630 at 4251.360 kb on - strand, within DZA65_RS19630 at 4251.360 kb on - strand, within DZA65_RS19630 at 4251.361 kb on + strand, within DZA65_RS19630 at 4251.362 kb on - strand, within DZA65_RS19630 at 4251.362 kb on - strand, within DZA65_RS19630 at 4251.659 kb on + strand, within DZA65_RS19630 at 4251.659 kb on + strand, within DZA65_RS19630 at 4251.660 kb on - strand, within DZA65_RS19630 at 4251.693 kb on + strand, within DZA65_RS19630 at 4251.722 kb on + strand, within DZA65_RS19630 at 4251.722 kb on + strand, within DZA65_RS19630 at 4251.722 kb on + strand, within DZA65_RS19630 at 4251.950 kb on + strand at 4251.950 kb on + strand at 4252.019 kb on + strand at 4252.047 kb on + strand at 4252.047 kb on + strand at 4252.047 kb on + strand at 4252.047 kb on + strand at 4252.047 kb on + strand at 4252.047 kb on + strand at 4252.047 kb on + strand at 4252.048 kb on - strand at 4252.048 kb on - strand at 4252.048 kb on - strand at 4252.048 kb on - strand at 4252.048 kb on - strand at 4252.048 kb on - strand at 4252.048 kb on - strand at 4252.048 kb on - strand at 4252.109 kb on + strand at 4252.113 kb on - strand at 4252.113 kb on - strand at 4252.113 kb on - strand at 4252.127 kb on + strand at 4252.127 kb on + strand at 4252.158 kb on + strand at 4252.158 kb on + strand at 4252.158 kb on + strand at 4252.158 kb on + strand at 4252.158 kb on + strand at 4252.192 kb on + strand, within DZA65_RS19635 at 4252.192 kb on + strand, within DZA65_RS19635 at 4252.192 kb on + strand, within DZA65_RS19635 at 4252.192 kb on + strand, within DZA65_RS19635 at 4252.192 kb on + strand, within DZA65_RS19635 at 4252.192 kb on + strand, within DZA65_RS19635 at 4252.192 kb on + strand, within DZA65_RS19635 at 4252.192 kb on + strand, within DZA65_RS19635 at 4252.230 kb on + strand, within DZA65_RS19635 at 4252.230 kb on + strand, within DZA65_RS19635 at 4252.230 kb on + strand, within DZA65_RS19635 at 4252.231 kb on - strand, within DZA65_RS19635 at 4252.231 kb on - strand, within DZA65_RS19635 at 4252.231 kb on - strand, within DZA65_RS19635 at 4252.326 kb on + strand, within DZA65_RS19635 at 4252.326 kb on + strand, within DZA65_RS19635 at 4252.326 kb on + strand, within DZA65_RS19635 at 4252.380 kb on + strand, within DZA65_RS19635 at 4252.488 kb on + strand, within DZA65_RS19635 at 4252.488 kb on + strand, within DZA65_RS19635 at 4252.488 kb on + strand, within DZA65_RS19635 at 4252.488 kb on + strand, within DZA65_RS19635 at 4252.488 kb on + strand, within DZA65_RS19635 at 4252.653 kb on + strand at 4252.653 kb on + strand at 4252.656 kb on + strand at 4252.656 kb on + strand at 4252.656 kb on + strand at 4252.656 kb on + strand at 4252.694 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,250,162 + -0.9 4,250,162 + -3.4 4,250,162 + -0.1 4,250,163 - -1.3 4,250,163 - -0.3 4,250,163 - -0.4 4,250,163 - -0.6 4,250,199 + +0.6 4,250,199 + -0.8 4,250,199 + -0.2 4,250,199 + +0.2 4,250,200 - -0.6 4,250,202 + -0.6 4,250,202 + +1.5 4,250,202 + -0.2 4,250,202 + +0.0 4,250,202 + -0.3 4,250,202 + -0.8 4,250,203 - +0.3 4,250,203 - -0.9 4,250,203 - +0.2 4,250,203 - +1.8 4,250,203 - -0.7 4,250,203 - +0.3 4,250,203 - +0.5 4,250,203 - +0.1 4,250,203 - +0.6 4,250,219 + -0.0 4,250,219 + -0.3 4,250,219 + -0.5 4,250,220 - -0.2 4,250,220 - +0.6 4,250,220 - -0.7 4,250,220 - +0.3 4,250,220 - -0.3 4,250,220 - -1.9 4,250,221 + -0.3 4,250,221 + +0.8 4,250,221 + -1.5 4,250,221 + -0.4 4,250,221 + -0.2 4,250,221 + +0.7 4,250,221 + -0.4 4,250,221 + -0.1 4,250,222 - -1.2 4,250,222 - -0.3 4,250,222 - -0.3 4,250,222 - +0.2 4,250,222 - -0.4 4,250,222 - -0.9 4,250,300 + -0.2 4,250,301 - -0.2 4,250,301 - +0.6 4,250,301 - -2.2 4,250,301 - -0.5 4,250,301 - +0.7 4,250,301 - -0.6 4,250,301 - -0.4 4,250,312 - +0.2 4,250,312 - -1.4 4,250,323 + -0.2 4,250,464 + DZA65_RS19625 0.20 +0.4 4,250,464 + DZA65_RS19625 0.20 +0.7 4,250,464 + DZA65_RS19625 0.20 -0.2 4,250,465 - DZA65_RS19625 0.20 -0.1 4,250,465 - DZA65_RS19625 0.20 -0.4 4,250,488 + DZA65_RS19625 0.23 -0.9 4,250,488 + DZA65_RS19625 0.23 -0.3 4,250,514 + DZA65_RS19625 0.27 -0.4 4,250,818 + DZA65_RS19625 0.68 -1.2 4,250,955 - DZA65_RS19625 0.87 -1.9 4,250,960 + DZA65_RS19625 0.88 +0.2 4,250,960 + DZA65_RS19625 0.88 -0.4 4,250,960 + DZA65_RS19625 0.88 -0.9 4,250,960 + DZA65_RS19625 0.88 +1.1 4,250,960 + DZA65_RS19625 0.88 +0.4 4,250,961 - DZA65_RS19625 0.88 +0.0 4,250,961 - DZA65_RS19625 0.88 -1.4 4,250,988 - +1.4 4,251,028 + -0.4 4,251,028 + -1.9 4,251,029 - +0.5 4,251,029 - -2.0 4,251,057 + -0.5 4,251,057 + -0.7 4,251,057 + +0.7 4,251,058 - +0.5 4,251,058 - -0.4 4,251,058 - -1.4 4,251,068 - -0.6 4,251,170 + DZA65_RS19630 0.11 -1.9 4,251,170 + DZA65_RS19630 0.11 +1.0 4,251,170 + DZA65_RS19630 0.11 -0.7 4,251,170 + DZA65_RS19630 0.11 -1.1 4,251,170 + DZA65_RS19630 0.11 -0.8 4,251,170 + DZA65_RS19630 0.11 -2.9 4,251,170 + DZA65_RS19630 0.11 -1.0 4,251,170 + DZA65_RS19630 0.11 -0.4 4,251,170 + DZA65_RS19630 0.11 -2.6 4,251,170 + DZA65_RS19630 0.11 -1.0 4,251,171 - DZA65_RS19630 0.11 -1.2 4,251,171 - DZA65_RS19630 0.11 -1.9 4,251,171 - DZA65_RS19630 0.11 -1.7 4,251,171 - DZA65_RS19630 0.11 -2.0 4,251,171 - DZA65_RS19630 0.11 -2.2 4,251,171 - DZA65_RS19630 0.11 -1.4 4,251,171 - DZA65_RS19630 0.11 -1.8 4,251,171 - DZA65_RS19630 0.11 -0.7 4,251,192 - DZA65_RS19630 0.14 +0.7 4,251,226 + DZA65_RS19630 0.17 -1.2 4,251,248 + DZA65_RS19630 0.19 -0.1 4,251,249 - DZA65_RS19630 0.20 +1.7 4,251,306 + DZA65_RS19630 0.26 -1.3 4,251,307 - DZA65_RS19630 0.26 +0.1 4,251,307 - DZA65_RS19630 0.26 -0.8 4,251,307 - DZA65_RS19630 0.26 -1.4 4,251,307 - DZA65_RS19630 0.26 -0.2 4,251,350 + DZA65_RS19630 0.30 -2.2 4,251,350 + DZA65_RS19630 0.30 -1.4 4,251,350 + DZA65_RS19630 0.30 +0.3 4,251,350 + DZA65_RS19630 0.30 -0.5 4,251,351 - DZA65_RS19630 0.30 -0.7 4,251,351 - DZA65_RS19630 0.30 -0.4 4,251,359 + DZA65_RS19630 0.31 -0.6 4,251,359 + DZA65_RS19630 0.31 -0.5 4,251,359 + DZA65_RS19630 0.31 -0.4 4,251,359 + DZA65_RS19630 0.31 +0.2 4,251,360 - DZA65_RS19630 0.31 -0.3 4,251,360 - DZA65_RS19630 0.31 -0.7 4,251,360 - DZA65_RS19630 0.31 -1.4 4,251,360 - DZA65_RS19630 0.31 -2.4 4,251,360 - DZA65_RS19630 0.31 -1.5 4,251,360 - DZA65_RS19630 0.31 +0.1 4,251,360 - DZA65_RS19630 0.31 -0.3 4,251,360 - DZA65_RS19630 0.31 +0.1 4,251,361 + DZA65_RS19630 0.31 -1.9 4,251,362 - DZA65_RS19630 0.31 -1.5 4,251,362 - DZA65_RS19630 0.31 +0.4 4,251,659 + DZA65_RS19630 0.63 -0.3 4,251,659 + DZA65_RS19630 0.63 -1.2 4,251,660 - DZA65_RS19630 0.63 -1.6 4,251,693 + DZA65_RS19630 0.66 -2.0 4,251,722 + DZA65_RS19630 0.69 -1.6 4,251,722 + DZA65_RS19630 0.69 +0.8 4,251,722 + DZA65_RS19630 0.69 -1.7 4,251,950 + -0.0 4,251,950 + +0.2 4,252,019 + -0.8 4,252,047 + -0.3 4,252,047 + -0.9 4,252,047 + -0.5 4,252,047 + -0.6 4,252,047 + +0.6 4,252,047 + -0.4 4,252,047 + -0.2 4,252,048 - -0.2 4,252,048 - -2.0 4,252,048 - -1.6 4,252,048 - +0.6 4,252,048 - -1.0 4,252,048 - +1.9 4,252,048 - +0.5 4,252,048 - -1.0 4,252,109 + +0.9 4,252,113 - -0.3 4,252,113 - -0.1 4,252,113 - -1.2 4,252,127 + +0.2 4,252,127 + +0.4 4,252,158 + -3.1 4,252,158 + -0.5 4,252,158 + -0.7 4,252,158 + +1.1 4,252,158 + -0.9 4,252,192 + DZA65_RS19635 0.13 -1.9 4,252,192 + DZA65_RS19635 0.13 -1.2 4,252,192 + DZA65_RS19635 0.13 +0.3 4,252,192 + DZA65_RS19635 0.13 +0.6 4,252,192 + DZA65_RS19635 0.13 +0.1 4,252,192 + DZA65_RS19635 0.13 +0.1 4,252,192 + DZA65_RS19635 0.13 -0.2 4,252,192 + DZA65_RS19635 0.13 +0.5 4,252,230 + DZA65_RS19635 0.20 +0.3 4,252,230 + DZA65_RS19635 0.20 +1.5 4,252,230 + DZA65_RS19635 0.20 -1.6 4,252,231 - DZA65_RS19635 0.20 -1.7 4,252,231 - DZA65_RS19635 0.20 -0.4 4,252,231 - DZA65_RS19635 0.20 +0.1 4,252,326 + DZA65_RS19635 0.37 +1.5 4,252,326 + DZA65_RS19635 0.37 +0.4 4,252,326 + DZA65_RS19635 0.37 -0.7 4,252,380 + DZA65_RS19635 0.46 +1.1 4,252,488 + DZA65_RS19635 0.65 +0.6 4,252,488 + DZA65_RS19635 0.65 +0.4 4,252,488 + DZA65_RS19635 0.65 +0.0 4,252,488 + DZA65_RS19635 0.65 -0.6 4,252,488 + DZA65_RS19635 0.65 -0.8 4,252,653 + -1.7 4,252,653 + -0.2 4,252,656 + -0.6 4,252,656 + -0.9 4,252,656 + -0.6 4,252,656 + -0.4 4,252,694 + +0.8
Or see this region's nucleotide sequence