Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18125

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,899,862	+		DZA65_RS18120	0.29	+0.7
3,899,862	+		DZA65_RS18120	0.29	-0.2
3,899,862	+		DZA65_RS18120	0.29	-0.9
3,899,863	-		DZA65_RS18120	0.29	+0.7
3,899,863	-		DZA65_RS18120	0.29	-0.4
3,899,863	-		DZA65_RS18120	0.29	-0.6
3,899,863	-		DZA65_RS18120	0.29	+0.3
3,900,072	+		DZA65_RS18120	0.47	+0.8
3,900,072	+		DZA65_RS18120	0.47	+0.3
3,900,072	+		DZA65_RS18120	0.47	+0.2
3,900,073	-		DZA65_RS18120	0.47	-2.4
3,900,096	+		DZA65_RS18120	0.49	+0.4
3,900,096	+		DZA65_RS18120	0.49	-2.3
3,900,097	-		DZA65_RS18120	0.49	-0.0
3,900,097	-		DZA65_RS18120	0.49	-0.5
3,900,210	+		DZA65_RS18120	0.59	+0.4
3,900,210	+		DZA65_RS18120	0.59	+0.8
3,900,210	+		DZA65_RS18120	0.59	+0.0
3,900,210	+		DZA65_RS18120	0.59	-0.2
3,900,211	-		DZA65_RS18120	0.59	-0.2
3,900,211	-		DZA65_RS18120	0.59	+0.1
3,900,211	-		DZA65_RS18120	0.59	+0.6
3,900,211	-		DZA65_RS18120	0.59	-0.5
3,900,217	+		DZA65_RS18120	0.60	+0.5
3,900,218	-		DZA65_RS18120	0.60	+0.4
3,900,255	+				+2.1
3,900,255	+		DZA65_RS18120	0.63	+0.8
3,900,255	+		DZA65_RS18120	0.63	+0.3
3,900,255	+		DZA65_RS18120	0.63	-0.5
3,900,255	+		DZA65_RS18120	0.63	-1.0
3,900,255	+		DZA65_RS18120	0.63	-1.9
3,900,255	+		DZA65_RS18120	0.63	+0.5
3,900,255	+		DZA65_RS18120	0.63	-1.5
3,900,255	+		DZA65_RS18120	0.63	-2.3
3,900,255	+		DZA65_RS18120	0.63	+1.3
3,900,255	+		DZA65_RS18120	0.63	-0.3
3,900,255	+		DZA65_RS18120	0.63	+1.1
3,900,255	+		DZA65_RS18120	0.63	-1.1
3,900,255	+		DZA65_RS18120	0.63	-0.3
3,900,255	+		DZA65_RS18120	0.63	-0.5
3,900,255	+		DZA65_RS18120	0.63	-1.9
3,900,255	+		DZA65_RS18120	0.63	+0.5
3,900,256	-		DZA65_RS18120	0.63	-1.3
3,900,256	-		DZA65_RS18120	0.63	+0.5
3,900,256	-		DZA65_RS18120	0.63	+1.1
3,900,256	-		DZA65_RS18120	0.63	-1.9
3,900,256	-		DZA65_RS18120	0.63	+0.4
3,900,256	-		DZA65_RS18120	0.63	-0.9
3,900,256	-		DZA65_RS18120	0.63	-0.7
3,900,256	-		DZA65_RS18120	0.63	-0.0
3,900,256	-		DZA65_RS18120	0.63	-2.8
3,900,256	-		DZA65_RS18120	0.63	+0.4
3,900,256	-		DZA65_RS18120	0.63	-1.5
3,900,256	-		DZA65_RS18120	0.63	-0.3
3,900,285	+		DZA65_RS18120	0.66	-0.2
3,900,286	-		DZA65_RS18120	0.66	-0.7
3,900,347	+		DZA65_RS18120	0.71	+0.6
3,900,347	+		DZA65_RS18120	0.71	-2.9
3,900,347	+		DZA65_RS18120	0.71	-0.8
3,900,347	+		DZA65_RS18120	0.71	-0.9
3,900,347	+		DZA65_RS18120	0.71	+0.1
3,900,347	+		DZA65_RS18120	0.71	-1.5
3,900,348	-		DZA65_RS18120	0.71	+0.2
3,900,348	-		DZA65_RS18120	0.71	+0.3
3,900,348	-		DZA65_RS18120	0.71	-1.0
3,900,348	-		DZA65_RS18120	0.71	-0.1
3,900,447	+		DZA65_RS18120	0.80	+0.1
3,900,447	+		DZA65_RS18120	0.80	-0.3
3,900,448	-		DZA65_RS18120	0.80	+0.2
3,900,448	-		DZA65_RS18120	0.80	+0.2
3,900,453	+		DZA65_RS18120	0.80	-0.2
3,900,453	+		DZA65_RS18120	0.80	+0.4
3,900,453	+		DZA65_RS18120	0.80	+0.1
3,900,454	-		DZA65_RS18120	0.80	-0.6
3,900,454	-		DZA65_RS18120	0.80	+2.4
3,900,454	-		DZA65_RS18120	0.80	-1.4
3,900,454	-		DZA65_RS18120	0.80	-0.6
3,900,454	-		DZA65_RS18120	0.80	+0.9
3,900,454	-		DZA65_RS18120	0.80	-1.8
3,900,462	+		DZA65_RS18120	0.81	-0.1
3,900,462	+		DZA65_RS18120	0.81	-0.4
3,900,556	+		DZA65_RS18120	0.89	-0.3
3,900,605	+				-0.1
3,900,605	+				-0.6
3,900,605	+				-0.5
3,900,605	+				-0.7
3,900,605	+				+0.5
3,900,605	+				+0.6
3,900,627	+				-0.3
3,900,652	+				+0.6
3,900,652	+				-0.0
3,900,652	+				-2.8
3,900,652	+				-0.6
3,900,652	+				+0.4
3,900,652	+				-0.3
3,900,653	-				-0.9
3,900,653	-				+0.7
3,900,653	-				-0.1
3,900,659	+				-0.3
3,900,660	-				-0.5
3,900,676	+				-0.4
3,900,676	+				+0.2
3,900,677	-				-1.3
3,900,677	-				+0.6
3,900,677	-				-1.5
3,900,683	+				+0.1
3,900,684	-				-1.3
3,900,703	-				+0.3
3,900,703	-				+0.2
3,900,767	+				-0.7
3,900,767	+				-0.3
3,900,767	+				-1.6
3,900,767	+				-1.7
3,900,767	+				+1.1
3,900,767	+				-1.1
3,900,767	+				-1.3
3,900,767	+				-0.1
3,900,767	+				+2.1
3,900,768	-				-0.5
3,900,768	-				+0.2
3,900,768	-				+0.3
3,900,768	-				-0.3
3,900,771	+				-0.3
3,900,771	+				-1.2
3,900,771	+				-0.6
3,900,771	+				-0.3
3,900,771	+				-3.3
3,900,771	+				-0.3
3,900,771	+				+0.7
3,900,771	+				-0.6
3,900,772	-				-0.2
3,900,772	-				-0.5
3,900,772	-				+0.1
3,900,772	-				-0.3
3,900,772	-				+0.2
3,900,772	-				+0.5
3,900,772	-				-0.3
3,900,772	-				-1.3
3,900,772	-				-1.0
3,900,772	-				-0.8
3,900,772	-				+1.2
3,900,772	-				-0.5
3,900,772	-				-1.3
3,900,772	-				+0.1
3,900,790	+				+0.9
3,900,790	+				+0.2
3,900,790	+				+0.7
3,900,790	+				+0.2
3,900,790	+				-0.8
3,900,790	+				-1.5
3,900,790	+				-1.1
3,900,790	+				-0.5
3,900,790	+				-1.3
3,900,790	+				+0.5
3,900,790	+				+1.2
3,900,790	+				-2.1
3,900,791	-				-0.4
3,900,791	-				-0.2
3,900,791	-				-0.7
3,900,791	-				+0.2
3,900,791	-				-0.2
3,900,791	-				+0.8
3,900,791	-				-0.0
3,900,791	-				-1.2
3,900,858	+				-0.3
3,900,899	+				+0.5
3,900,900	-				-0.9
3,900,900	-				-0.2
3,900,933	-				-0.5
3,901,156	+		DZA65_RS18125	0.21	-0.9
3,901,156	+		DZA65_RS18125	0.21	-0.5
3,901,156	+		DZA65_RS18125	0.21	+0.1
3,901,157	-		DZA65_RS18125	0.21	+1.1
3,901,248	+		DZA65_RS18125	0.26	+1.1
3,901,248	+		DZA65_RS18125	0.26	+0.1
3,901,248	+		DZA65_RS18125	0.26	-1.7
3,901,249	-		DZA65_RS18125	0.26	-0.3
3,901,249	-		DZA65_RS18125	0.26	-0.1
3,901,249	-		DZA65_RS18125	0.26	+1.0
3,901,310	+		DZA65_RS18125	0.30	+0.1
3,901,310	+		DZA65_RS18125	0.30	-0.7
3,901,310	+		DZA65_RS18125	0.30	-0.3
3,901,310	+		DZA65_RS18125	0.30	-0.7
3,901,310	+		DZA65_RS18125	0.30	+2.5
3,901,310	+		DZA65_RS18125	0.30	-1.5
3,901,310	+		DZA65_RS18125	0.30	-0.9
3,901,310	+		DZA65_RS18125	0.30	-0.3
3,901,310	+		DZA65_RS18125	0.30	-1.4
3,901,311	-		DZA65_RS18125	0.30	+0.1
3,901,311	-		DZA65_RS18125	0.30	+0.3
3,901,311	-				+2.1
3,901,311	-		DZA65_RS18125	0.30	-0.4
3,901,314	+		DZA65_RS18125	0.31	+1.1
3,901,314	+		DZA65_RS18125	0.31	+3.4
3,901,314	+		DZA65_RS18125	0.31	+0.7
3,901,314	+		DZA65_RS18125	0.31	-2.1
3,901,314	+		DZA65_RS18125	0.31	-0.2
3,901,315	-		DZA65_RS18125	0.31	-0.9
3,901,315	-		DZA65_RS18125	0.31	+0.3
3,901,315	-		DZA65_RS18125	0.31	-1.3
3,901,315	-		DZA65_RS18125	0.31	-0.7
3,901,315	-		DZA65_RS18125	0.31	-0.2
3,901,315	-		DZA65_RS18125	0.31	+1.5
3,901,315	-				+0.7
3,901,315	-		DZA65_RS18125	0.31	-1.4
3,901,315	-		DZA65_RS18125	0.31	+1.7
3,901,315	-		DZA65_RS18125	0.31	-2.7
3,901,316	+		DZA65_RS18125	0.31	-0.4
3,901,316	+		DZA65_RS18125	0.31	+0.6
3,901,316	+		DZA65_RS18125	0.31	-0.3
3,901,316	+		DZA65_RS18125	0.31	-0.5
3,901,316	+		DZA65_RS18125	0.31	-0.2
3,901,316	+		DZA65_RS18125	0.31	-0.6
3,901,316	+		DZA65_RS18125	0.31	+1.7
3,901,316	+		DZA65_RS18125	0.31	-1.4
3,901,316	+		DZA65_RS18125	0.31	-1.2
3,901,316	+		DZA65_RS18125	0.31	-0.7
3,901,316	+		DZA65_RS18125	0.31	-0.5
3,901,316	+		DZA65_RS18125	0.31	+0.1
3,901,316	+		DZA65_RS18125	0.31	+0.7
3,901,316	+		DZA65_RS18125	0.31	-0.2
3,901,317	-		DZA65_RS18125	0.31	-0.5
3,901,317	-		DZA65_RS18125	0.31	+0.8
3,901,317	-		DZA65_RS18125	0.31	-0.5
3,901,317	-		DZA65_RS18125	0.31	+0.1
3,901,317	-		DZA65_RS18125	0.31	+0.1
3,901,317	-		DZA65_RS18125	0.31	-1.0
3,901,317	-		DZA65_RS18125	0.31	-0.0
3,901,317	-		DZA65_RS18125	0.31	+0.3
3,901,317	-		DZA65_RS18125	0.31	+0.5
3,901,317	-		DZA65_RS18125	0.31	+0.3
3,901,317	-		DZA65_RS18125	0.31	-2.1
3,901,317	-		DZA65_RS18125	0.31	+0.7
3,901,317	-		DZA65_RS18125	0.31	-0.5
3,901,317	-		DZA65_RS18125	0.31	-1.6
3,901,317	-		DZA65_RS18125	0.31	-0.4
3,901,317	-		DZA65_RS18125	0.31	-2.4
3,901,317	-		DZA65_RS18125	0.31	-0.5
3,901,317	-		DZA65_RS18125	0.31	-1.3
3,901,317	-		DZA65_RS18125	0.31	-1.9
3,901,317	-		DZA65_RS18125	0.31	+0.8
3,901,317	-		DZA65_RS18125	0.31	+0.5
3,901,320	+		DZA65_RS18125	0.31	+0.3
3,901,320	+				+1.7
3,901,320	+		DZA65_RS18125	0.31	+0.1
3,901,321	-		DZA65_RS18125	0.31	+1.8
3,901,321	-		DZA65_RS18125	0.31	-0.6
3,901,321	-		DZA65_RS18125	0.31	-0.7
3,901,321	-		DZA65_RS18125	0.31	-0.8
3,901,321	-		DZA65_RS18125	0.31	+0.7
3,901,321	-		DZA65_RS18125	0.31	+0.3
3,901,321	-		DZA65_RS18125	0.31	-0.4
3,901,334	+		DZA65_RS18125	0.32	-0.9
3,901,334	+		DZA65_RS18125	0.32	-0.5
3,901,334	+		DZA65_RS18125	0.32	-1.4
3,901,334	+		DZA65_RS18125	0.32	-1.1
3,901,334	+		DZA65_RS18125	0.32	+0.9
3,901,334	+		DZA65_RS18125	0.32	+0.2
3,901,334	+		DZA65_RS18125	0.32	+0.8
3,901,334	+		DZA65_RS18125	0.32	+0.7
3,901,334	+		DZA65_RS18125	0.32	-1.0
3,901,334	+		DZA65_RS18125	0.32	+0.3
3,901,334	+		DZA65_RS18125	0.32	+0.3
3,901,334	+		DZA65_RS18125	0.32	-1.5
3,901,334	+		DZA65_RS18125	0.32	-0.3
3,901,334	+		DZA65_RS18125	0.32	+0.4
3,901,334	+		DZA65_RS18125	0.32	-0.2
3,901,334	+		DZA65_RS18125	0.32	-0.2
3,901,335	-		DZA65_RS18125	0.32	-0.4
3,901,335	-		DZA65_RS18125	0.32	-0.7
3,901,335	-		DZA65_RS18125	0.32	-0.1
3,901,335	-		DZA65_RS18125	0.32	+0.2
3,901,335	-		DZA65_RS18125	0.32	+0.1
3,901,335	-		DZA65_RS18125	0.32	+1.4
3,901,335	-				+0.1
3,901,335	-		DZA65_RS18125	0.32	+0.7
3,901,335	-		DZA65_RS18125	0.32	-0.5
3,901,335	-		DZA65_RS18125	0.32	-0.2
3,901,335	-		DZA65_RS18125	0.32	+0.3
3,901,335	-		DZA65_RS18125	0.32	+0.7
3,901,335	-		DZA65_RS18125	0.32	+0.1
3,901,404	+		DZA65_RS18125	0.36	+0.8
3,901,405	-		DZA65_RS18125	0.36	-0.4
3,901,405	-		DZA65_RS18125	0.36	-1.7
3,901,405	-		DZA65_RS18125	0.36	-1.0
3,901,412	+		DZA65_RS18125	0.37	-0.6
3,901,412	+		DZA65_RS18125	0.37	-0.2
3,901,413	-		DZA65_RS18125	0.37	-0.7
3,901,413	-		DZA65_RS18125	0.37	+2.1
3,901,413	-		DZA65_RS18125	0.37	-0.6
3,901,413	-		DZA65_RS18125	0.37	-1.3
3,901,413	-		DZA65_RS18125	0.37	-0.3
3,901,413	-		DZA65_RS18125	0.37	-0.5
3,901,416	-		DZA65_RS18125	0.37	+0.2
3,901,416	-		DZA65_RS18125	0.37	-0.4
3,901,416	-		DZA65_RS18125	0.37	+0.3
3,901,427	+		DZA65_RS18125	0.38	-0.5
3,901,427	+		DZA65_RS18125	0.38	+0.4
3,901,469	+		DZA65_RS18125	0.40	-0.0
3,901,525	-		DZA65_RS18125	0.44	-1.0
3,901,525	-		DZA65_RS18125	0.44	-0.2
3,901,585	+		DZA65_RS18125	0.48	+0.2
3,901,585	+		DZA65_RS18125	0.48	+0.9
3,901,586	-		DZA65_RS18125	0.48	+0.7
3,901,598	+		DZA65_RS18125	0.49	-0.5
3,901,598	+		DZA65_RS18125	0.49	-0.5
3,901,598	+		DZA65_RS18125	0.49	-0.1
3,901,598	+		DZA65_RS18125	0.49	-0.5
3,901,598	+		DZA65_RS18125	0.49	+1.7
3,901,599	-		DZA65_RS18125	0.49	+0.1
3,901,599	-		DZA65_RS18125	0.49	-0.7
3,901,599	-		DZA65_RS18125	0.49	+0.7
3,901,599	-		DZA65_RS18125	0.49	+0.3
3,901,599	-		DZA65_RS18125	0.49	+0.6
3,901,601	+		DZA65_RS18125	0.49	+0.1
3,901,601	+		DZA65_RS18125	0.49	+0.5
3,901,601	+		DZA65_RS18125	0.49	+1.1
3,901,602	-		DZA65_RS18125	0.49	-1.0
3,901,602	-		DZA65_RS18125	0.49	-1.3
3,901,602	-		DZA65_RS18125	0.49	+0.5
3,901,602	-		DZA65_RS18125	0.49	-0.1
3,901,602	-		DZA65_RS18125	0.49	-0.1
3,901,635	+		DZA65_RS18125	0.51	-0.1
3,901,635	+		DZA65_RS18125	0.51	-0.0
3,901,637	+		DZA65_RS18125	0.51	-0.2
3,901,637	+		DZA65_RS18125	0.51	+0.2
3,901,638	-		DZA65_RS18125	0.51	+0.2
3,901,649	+		DZA65_RS18125	0.52	-0.7
3,901,649	+		DZA65_RS18125	0.52	-0.4
3,901,649	+		DZA65_RS18125	0.52	-0.7
3,901,649	+		DZA65_RS18125	0.52	-0.1
3,901,649	+		DZA65_RS18125	0.52	-0.1
3,901,649	+		DZA65_RS18125	0.52	-0.2
3,901,649	+		DZA65_RS18125	0.52	+2.2
3,901,649	+		DZA65_RS18125	0.52	+0.3
3,901,649	+		DZA65_RS18125	0.52	+0.6
3,901,649	+		DZA65_RS18125	0.52	-1.7
3,901,649	+		DZA65_RS18125	0.52	+0.1
3,901,650	-		DZA65_RS18125	0.52	-0.9
3,901,650	-		DZA65_RS18125	0.52	-0.1
3,901,650	-		DZA65_RS18125	0.52	+0.6
3,901,650	-		DZA65_RS18125	0.52	+0.7
3,901,650	-		DZA65_RS18125	0.52	-0.5
3,901,650	-		DZA65_RS18125	0.52	-0.3
3,901,650	-		DZA65_RS18125	0.52	+0.8
3,901,650	-		DZA65_RS18125	0.52	-0.3
3,901,650	-		DZA65_RS18125	0.52	+0.3
3,901,675	-		DZA65_RS18125	0.54	-0.3
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3,901,704	+		DZA65_RS18125	0.55	+0.1
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3,901,811	+		DZA65_RS18125	0.62	+0.3
3,901,811	+		DZA65_RS18125	0.62	-1.0
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3,901,812	-		DZA65_RS18125	0.62	+0.0
3,901,812	-		DZA65_RS18125	0.62	-0.1
3,901,812	-		DZA65_RS18125	0.62	+1.2
3,901,812	-		DZA65_RS18125	0.62	+0.2
3,901,862	+		DZA65_RS18125	0.65	+0.4
3,901,862	+		DZA65_RS18125	0.65	-0.1
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3,901,863	-		DZA65_RS18125	0.65	-0.5
3,901,863	-		DZA65_RS18125	0.65	-0.1
3,901,863	-		DZA65_RS18125	0.65	-0.5
3,901,908	+		DZA65_RS18125	0.68	-0.5
3,901,909	-		DZA65_RS18125	0.68	+0.7
3,902,022	-		DZA65_RS18125	0.76	+0.9
3,902,042	+		DZA65_RS18125	0.77	-0.2
3,902,043	-		DZA65_RS18125	0.77	+0.5
3,902,043	-		DZA65_RS18125	0.77	+2.2
3,902,043	-		DZA65_RS18125	0.77	-0.5
3,902,046	+		DZA65_RS18125	0.77	-1.5
3,902,047	-		DZA65_RS18125	0.77	-0.3
3,902,047	-		DZA65_RS18125	0.77	-0.5
3,902,047	-		DZA65_RS18125	0.77	+0.1
3,902,047	-		DZA65_RS18125	0.77	+0.9
3,902,047	-		DZA65_RS18125	0.77	+0.1
3,902,063	+		DZA65_RS18125	0.78	-1.7
3,902,063	+		DZA65_RS18125	0.78	+0.2
3,902,063	+		DZA65_RS18125	0.78	-0.3
3,902,063	+		DZA65_RS18125	0.78	+1.3
3,902,063	+		DZA65_RS18125	0.78	-0.6
3,902,063	+		DZA65_RS18125	0.78	-0.9
3,902,063	+		DZA65_RS18125	0.78	+1.4
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3,902,064	-		DZA65_RS18125	0.78	+1.1
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3,902,067	+		DZA65_RS18125	0.78	+0.3
3,902,067	+		DZA65_RS18125	0.78	-0.9
3,902,068	-				+1.7
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3,902,075	+		DZA65_RS18125	0.79	-0.1
3,902,075	+		DZA65_RS18125	0.79	-1.6
3,902,075	+		DZA65_RS18125	0.79	-0.3
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3,902,076	-		DZA65_RS18125	0.79	+0.1
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3,902,078	+		DZA65_RS18125	0.79	-2.7
3,902,078	+		DZA65_RS18125	0.79	+1.1
3,902,078	+		DZA65_RS18125	0.79	-0.9
3,902,079	-		DZA65_RS18125	0.79	+2.7
3,902,079	-		DZA65_RS18125	0.79	-0.9
3,902,079	-		DZA65_RS18125	0.79	+0.6
3,902,079	-		DZA65_RS18125	0.79	+1.1
3,902,079	-		DZA65_RS18125	0.79	-0.2
3,902,084	+		DZA65_RS18125	0.79	-0.3
3,902,114	+		DZA65_RS18125	0.81	+0.3
3,902,115	-		DZA65_RS18125	0.81	+0.5
3,902,115	-		DZA65_RS18125	0.81	-1.9
3,902,251	-				-1.1
3,902,251	-				-0.5
3,902,259	+				+0.5
3,902,260	-				+0.3
3,902,260	-				-0.4
3,902,307	-				-0.2
3,902,376	-				-0.3
3,902,394	+				-0.6
3,902,394	+				-0.1
3,902,394	+				+0.8
3,902,394	+				-1.3
3,902,394	+				+0.7
3,902,394	+				+1.1
3,902,395	-				+0.3
3,902,395	-				+0.1
3,902,395	-				-0.9
3,902,395	-				-0.8
3,902,395	-				-0.2
3,902,395	-				-0.4
3,902,395	-				-0.2
3,902,429	+				+0.5
3,902,429	+				-0.2
3,902,429	+				-0.4
3,902,429	+				+0.6
3,902,430	-				+1.9
3,902,430	-				+1.5
3,902,433	+				+1.1
3,902,434	-				+0.0
3,902,434	-				-0.4
3,902,434	-				-0.9
3,902,434	-				-0.1
3,902,434	-				+0.6
3,902,476	-				+1.1
3,902,487	-				-0.0
3,902,749	+				+0.6
3,902,787	+				-0.1
3,902,788	-				-0.9
3,903,302	+		DZA65_RS18130	0.30	+0.0