Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14630

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,182,666	-		DZA65_RS14625	0.27	+0.5
3,182,666	-		DZA65_RS14625	0.27	-0.3
3,182,666	-		DZA65_RS14625	0.27	+0.6
3,182,667	+		DZA65_RS14625	0.27	-1.2
3,182,667	+		DZA65_RS14625	0.27	+0.4
3,182,667	+		DZA65_RS14625	0.27	-0.1
3,182,667	+		DZA65_RS14625	0.27	+0.3
3,182,667	+		DZA65_RS14625	0.27	+0.4
3,182,668	-		DZA65_RS14625	0.27	-2.5
3,182,668	-		DZA65_RS14625	0.27	+0.7
3,182,668	-				+0.1
3,182,668	-		DZA65_RS14625	0.27	+0.1
3,182,668	-		DZA65_RS14625	0.27	-0.5
3,182,684	-		DZA65_RS14625	0.29	-0.6
3,182,732	+		DZA65_RS14625	0.33	+0.3
3,182,733	-		DZA65_RS14625	0.33	-1.7
3,182,765	+		DZA65_RS14625	0.35	-1.1
3,182,765	+		DZA65_RS14625	0.35	-1.4
3,182,765	+		DZA65_RS14625	0.35	+0.1
3,182,765	+		DZA65_RS14625	0.35	-0.3
3,182,765	+		DZA65_RS14625	0.35	-0.1
3,182,766	-		DZA65_RS14625	0.35	-1.3
3,182,766	-		DZA65_RS14625	0.35	-1.0
3,182,766	-		DZA65_RS14625	0.35	-0.4
3,182,766	-		DZA65_RS14625	0.35	-0.0
3,182,766	-		DZA65_RS14625	0.35	-1.2
3,182,766	-		DZA65_RS14625	0.35	-0.5
3,182,766	-		DZA65_RS14625	0.35	-0.2
3,182,766	-		DZA65_RS14625	0.35	-1.3
3,182,822	+		DZA65_RS14625	0.40	-0.2
3,182,822	+		DZA65_RS14625	0.40	-1.2
3,182,822	+		DZA65_RS14625	0.40	-1.8
3,182,822	+		DZA65_RS14625	0.40	-1.2
3,182,822	+		DZA65_RS14625	0.40	+0.8
3,182,822	+		DZA65_RS14625	0.40	+0.4
3,182,822	+		DZA65_RS14625	0.40	+0.3
3,182,823	-		DZA65_RS14625	0.40	-1.0
3,182,874	-		DZA65_RS14625	0.44	-0.2
3,182,882	+		DZA65_RS14625	0.45	+0.2
3,182,882	+		DZA65_RS14625	0.45	+1.1
3,182,882	+		DZA65_RS14625	0.45	-0.8
3,182,883	-		DZA65_RS14625	0.45	-0.5
3,182,883	-		DZA65_RS14625	0.45	-0.4
3,182,891	+		DZA65_RS14625	0.46	+2.8
3,182,891	+		DZA65_RS14625	0.46	+1.0
3,182,891	+		DZA65_RS14625	0.46	+1.1
3,182,891	+		DZA65_RS14625	0.46	+0.1
3,183,058	+		DZA65_RS14625	0.60	-0.8
3,183,058	+		DZA65_RS14625	0.60	-0.7
3,183,058	+		DZA65_RS14625	0.60	+0.1
3,183,059	-		DZA65_RS14625	0.60	+1.9
3,183,059	-		DZA65_RS14625	0.60	-0.6
3,183,153	+		DZA65_RS14625	0.68	-0.4
3,183,153	+		DZA65_RS14625	0.68	+0.1
3,183,153	+		DZA65_RS14625	0.68	-0.5
3,183,153	+		DZA65_RS14625	0.68	-0.5
3,183,153	+		DZA65_RS14625	0.68	+0.5
3,183,153	+		DZA65_RS14625	0.68	-0.8
3,183,154	-		DZA65_RS14625	0.68	-2.1
3,183,154	-		DZA65_RS14625	0.68	-1.2
3,183,154	-		DZA65_RS14625	0.68	-1.1
3,183,371	+		DZA65_RS14625	0.86	+0.3
3,183,371	+		DZA65_RS14625	0.86	+0.4
3,183,371	+		DZA65_RS14625	0.86	-0.4
3,183,372	-		DZA65_RS14625	0.86	-0.8
3,183,372	-		DZA65_RS14625	0.86	+0.8
3,183,372	-		DZA65_RS14625	0.86	-0.4
3,183,372	-		DZA65_RS14625	0.86	-0.3
3,183,460	+				+0.1
3,183,460	+				-0.0
3,183,461	-				-0.2
3,183,461	-				-0.3
3,183,461	-				+0.6
3,183,461	-				+1.6
3,183,484	+				-0.6
3,183,484	+				+0.1
3,183,484	+				-0.8
3,183,485	-				-1.2
3,183,547	+				+0.3
3,183,547	+				-0.7
3,183,552	-				+1.8
3,183,552	-				+0.4
3,183,552	-				-1.4
3,183,552	-				+0.2
3,183,554	+				-0.0
3,183,554	+				-0.2
3,183,554	+				-0.5
3,183,563	+				-0.3
3,183,563	+				-0.9
3,183,566	+				-1.0
3,183,567	-				-1.4
3,183,574	+				-0.6
3,183,574	+				+0.2
3,183,575	-				-0.6
3,183,575	-				-0.0
3,183,576	+				-1.0
3,183,576	+				+0.6
3,183,576	+				+0.1
3,183,576	+				-0.5
3,183,576	+				-0.2
3,183,576	+				-0.9
3,183,577	-				-0.4
3,183,577	-				-0.2
3,183,577	-				-0.6
3,183,577	-				-1.4
3,183,647	+				+0.8
3,183,647	+				-0.4
3,183,647	+				-0.1
3,183,647	+				-1.6
3,183,647	+				+0.2
3,183,647	+				-1.0
3,183,647	+				+1.0
3,183,647	+				+0.2
3,183,647	+				-1.5
3,183,647	+				-1.6
3,183,647	+				+1.4
3,183,647	+				-0.8
3,183,648	-				-1.2
3,183,648	-				+0.8
3,183,648	-				+0.5
3,183,648	-				+0.3
3,183,727	+				-1.0
3,183,727	+				+0.0
3,183,728	-				-0.2
3,183,787	+		DZA65_RS14630	0.15	-0.7
3,183,787	+		DZA65_RS14630	0.15	+0.1
3,183,788	-		DZA65_RS14630	0.15	+1.1
3,183,788	-		DZA65_RS14630	0.15	-0.5
3,183,788	-		DZA65_RS14630	0.15	+3.1
3,183,818	+		DZA65_RS14630	0.19	-0.6
3,183,913	+		DZA65_RS14630	0.29	-1.6
3,183,913	+		DZA65_RS14630	0.29	-0.8
3,183,931	+		DZA65_RS14630	0.31	-0.2
3,183,931	+		DZA65_RS14630	0.31	-1.2
3,183,932	-		DZA65_RS14630	0.31	+0.7
3,183,932	-		DZA65_RS14630	0.31	-0.3
3,183,932	-		DZA65_RS14630	0.31	-0.7
3,183,932	-		DZA65_RS14630	0.31	-1.5
3,183,974	+		DZA65_RS14630	0.36	-0.5
3,183,975	-		DZA65_RS14630	0.36	-0.8
3,183,975	-		DZA65_RS14630	0.36	-0.7
3,184,155	+		DZA65_RS14630	0.56	-0.7
3,184,155	+		DZA65_RS14630	0.56	-0.3
3,184,156	-		DZA65_RS14630	0.56	-0.5
3,184,156	-		DZA65_RS14630	0.56	-0.3
3,184,188	-		DZA65_RS14630	0.59	-1.0
3,184,218	+		DZA65_RS14630	0.63	-1.5
3,184,218	+		DZA65_RS14630	0.63	+0.7
3,184,218	+		DZA65_RS14630	0.63	-0.2
3,184,218	+		DZA65_RS14630	0.63	-1.2
3,184,218	+		DZA65_RS14630	0.63	-1.0
3,184,218	+		DZA65_RS14630	0.63	+0.3
3,184,218	+		DZA65_RS14630	0.63	-0.0
3,184,218	+		DZA65_RS14630	0.63	-0.9
3,184,218	+		DZA65_RS14630	0.63	-0.8
3,184,218	+		DZA65_RS14630	0.63	-0.3
3,184,218	+		DZA65_RS14630	0.63	-2.0
3,184,218	+		DZA65_RS14630	0.63	+0.3
3,184,218	+		DZA65_RS14630	0.63	+0.6
3,184,219	-		DZA65_RS14630	0.63	-1.6
3,184,219	-		DZA65_RS14630	0.63	-0.8
3,184,219	-				+0.2
3,184,219	-		DZA65_RS14630	0.63	+0.1
3,184,297	+		DZA65_RS14630	0.71	-0.9
3,184,297	+		DZA65_RS14630	0.71	-0.7
3,184,298	-		DZA65_RS14630	0.72	+0.6
3,184,362	+		DZA65_RS14630	0.79	+0.2
3,184,362	+		DZA65_RS14630	0.79	+1.0
3,184,362	+		DZA65_RS14630	0.79	+0.4
3,184,362	+		DZA65_RS14630	0.79	-0.3
3,184,362	+		DZA65_RS14630	0.79	+0.1
3,184,362	+		DZA65_RS14630	0.79	-0.4
3,184,362	+		DZA65_RS14630	0.79	-1.8
3,184,363	-		DZA65_RS14630	0.79	-0.5
3,184,363	-		DZA65_RS14630	0.79	-0.2
3,184,363	-		DZA65_RS14630	0.79	+0.1
3,184,363	-		DZA65_RS14630	0.79	+0.1
3,184,422	+		DZA65_RS14630	0.85	+0.1
3,184,423	-		DZA65_RS14630	0.85	-0.0
3,184,429	+		DZA65_RS14630	0.86	-1.4
3,184,430	-		DZA65_RS14630	0.86	-1.0
3,184,430	-		DZA65_RS14630	0.86	-0.2
3,184,438	+		DZA65_RS14630	0.87	-0.7
3,184,438	+		DZA65_RS14630	0.87	-1.8
3,184,438	+		DZA65_RS14630	0.87	+0.2
3,184,453	+		DZA65_RS14630	0.89	-1.9
3,184,454	-		DZA65_RS14630	0.89	-1.8
3,184,454	-		DZA65_RS14630	0.89	-0.3
3,184,528	+				-0.2
3,184,528	+				-0.2
3,184,528	+				-0.2
3,184,529	-				-0.2
3,184,529	-				-1.1
3,184,529	-				-1.0
3,184,617	+				-0.0
3,184,617	+				+1.1
3,184,617	+				-0.5
3,184,618	-				-1.0
3,184,622	-				-1.0
3,184,622	-				-1.0
3,184,622	-				+0.7
3,184,622	-				-0.0
3,184,622	-				-2.0
3,184,622	-				-0.5
3,184,628	+				+0.4
3,184,628	+				-0.1
3,184,628	+				-0.1
3,184,628	+				+0.3
3,184,628	+				-1.8
3,184,629	-				+0.6
3,184,629	-				-0.5
3,184,629	-				-0.3
3,184,629	-				+0.8
3,184,629	-				+0.4
3,184,629	-				-0.6
3,184,650	+				-2.0
3,184,650	+				+1.2
3,184,650	+				-1.2
3,184,651	-				-0.0
3,184,651	-				-0.2
3,184,651	-				-0.3
3,184,651	-				+0.8
3,184,651	-				+0.2
3,184,651	-				+0.4
3,184,780	+				-1.7
3,184,781	-				+0.2
3,185,019	+		DZA65_RS22940	0.55	+1.1
3,185,020	-		DZA65_RS22940	0.56	-0.0
3,185,020	-		DZA65_RS22940	0.56	+0.7
3,185,020	-		DZA65_RS22940	0.56	+0.8
3,185,020	-		DZA65_RS22940	0.56	-1.5
3,185,028	+		DZA65_RS22940	0.59	-0.4
3,185,029	-		DZA65_RS22940	0.59	-0.2
3,185,029	-		DZA65_RS22940	0.59	+0.6
3,185,069	+		DZA65_RS22940	0.74	-0.3
3,185,069	+		DZA65_RS22940	0.74	+0.8
3,185,069	+		DZA65_RS22940	0.74	+0.7
3,185,070	-		DZA65_RS22940	0.75	-0.0
3,185,101	+		DZA65_RS22940	0.86	-0.2
3,185,102	-		DZA65_RS22940	0.87	-0.4
3,185,112	+				+2.4
3,185,112	+				-0.4
3,185,113	-				-1.0
3,185,113	-				-0.5
3,185,136	-				-0.8
3,185,163	+				-0.6
3,185,163	+				+0.1
3,185,164	-				-0.4
3,185,164	-				-0.6
3,185,174	+				-0.7
3,185,174	+				-0.2
3,185,175	-				-1.8
3,185,175	-				-0.0
3,185,175	-				-0.2
3,185,180	+		DZA65_RS14640	0.11	-1.8
3,185,181	-		DZA65_RS14640	0.11	-0.1
3,185,362	+		DZA65_RS14640	0.60	+0.2
3,185,362	+		DZA65_RS14640	0.60	-0.8
3,185,411	+		DZA65_RS14640	0.73	-1.6
3,185,411	+		DZA65_RS14640	0.73	+0.7
3,185,411	+		DZA65_RS14640	0.73	-1.5
3,185,411	+		DZA65_RS14640	0.73	-0.8
3,185,411	+		DZA65_RS14640	0.73	+0.1
3,185,412	-		DZA65_RS14640	0.74	-0.2
3,185,412	-		DZA65_RS14640	0.74	-1.4
3,185,412	-		DZA65_RS14640	0.74	-0.1
3,185,412	-		DZA65_RS14640	0.74	-0.0
3,185,412	-		DZA65_RS14640	0.74	-2.0
3,185,529	+				+0.2
3,185,529	+				-2.3
3,185,554	+				-0.2
3,185,554	+				-1.3
3,185,554	+				-1.6
3,185,554	+				+0.4
3,185,554	+				-0.3
3,185,554	+				-0.5
3,185,554	+				-1.0
3,185,554	+				-0.6
3,185,554	+				-0.1
3,185,554	+				+0.4
3,185,554	+				-1.5
3,185,554	+				+1.3
3,185,554	+				+0.5
3,185,554	+				+1.1
3,185,554	+				-0.8
3,185,554	+				+0.1
3,185,554	+				-0.9
3,185,554	+				-1.5
3,185,554	+				+0.3
3,185,554	+				+0.1
3,185,555	-				-0.2
3,185,555	-				-2.3
3,185,555	-				-0.8
3,185,555	-				-1.1
3,185,555	-				-0.9
3,185,555	-				+0.3
3,185,555	-				+0.2
3,185,555	-				-1.2
3,185,555	-				-0.3
3,185,555	-				-0.9
3,185,555	-				-0.9
3,185,555	-				+1.8
3,185,555	-				-1.1