Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14405

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,141,295	-		DZA65_RS14400	0.26	-0.8
3,141,302	+		DZA65_RS14400	0.27	-0.5
3,141,303	-		DZA65_RS14400	0.27	-0.8
3,141,303	-		DZA65_RS14400	0.27	-1.5
3,141,374	+		DZA65_RS14400	0.34	-0.2
3,141,389	-		DZA65_RS14400	0.35	-1.5
3,141,409	+		DZA65_RS14400	0.37	+0.1
3,141,409	+		DZA65_RS14400	0.37	+0.8
3,141,409	+		DZA65_RS14400	0.37	+0.4
3,141,410	-		DZA65_RS14400	0.37	-1.5
3,141,410	-		DZA65_RS14400	0.37	-0.2
3,141,410	-		DZA65_RS14400	0.37	+0.4
3,141,413	+		DZA65_RS14400	0.38	-1.2
3,141,413	+		DZA65_RS14400	0.38	-0.7
3,141,414	-		DZA65_RS14400	0.38	-0.0
3,141,414	-		DZA65_RS14400	0.38	+0.0
3,141,508	-		DZA65_RS14400	0.47	-0.9
3,141,516	-		DZA65_RS14400	0.47	-0.3
3,141,516	-		DZA65_RS14400	0.47	+0.4
3,141,543	+		DZA65_RS14400	0.50	-0.5
3,141,544	-		DZA65_RS14400	0.50	-0.3
3,141,560	-		DZA65_RS14400	0.52	-0.5
3,141,624	+		DZA65_RS14400	0.58	-0.2
3,141,661	+		DZA65_RS14400	0.61	+0.8
3,141,677	+		DZA65_RS14400	0.63	+1.4
3,141,677	+		DZA65_RS14400	0.63	+0.1
3,141,681	+		DZA65_RS14400	0.63	-0.6
3,141,681	+		DZA65_RS14400	0.63	-1.3
3,141,751	-		DZA65_RS14400	0.70	-1.2
3,141,765	+		DZA65_RS14400	0.71	+0.5
3,141,766	-		DZA65_RS14400	0.71	+0.8
3,141,766	-		DZA65_RS14400	0.71	+0.2
3,141,798	-		DZA65_RS14400	0.75	+0.5
3,141,798	-		DZA65_RS14400	0.75	+0.2
3,141,798	-		DZA65_RS14400	0.75	-1.7
3,141,798	-		DZA65_RS14400	0.75	-0.5
3,141,824	+		DZA65_RS14400	0.77	-0.4
3,141,824	+		DZA65_RS14400	0.77	-0.2
3,141,825	-		DZA65_RS14400	0.77	+0.1
3,141,848	+		DZA65_RS14400	0.79	+0.4
3,141,848	+		DZA65_RS14400	0.79	-0.5
3,141,849	-		DZA65_RS14400	0.79	-0.2
3,141,849	-		DZA65_RS14400	0.79	+0.4
3,142,026	+				-0.8
3,142,026	+				+0.0
3,142,027	-				+0.4
3,142,029	+				+2.6
3,142,029	+				+0.5
3,142,029	+				-1.5
3,142,029	+				-0.9
3,142,029	+				-0.8
3,142,030	-				-0.2
3,142,030	-				+0.6
3,142,030	-				-0.1
3,142,030	-				-0.4
3,142,030	-				-0.9
3,142,054	-				+0.0
3,142,061	-				-1.5
3,142,072	-				-0.3
3,142,072	-				-2.0
3,142,143	+				-0.4
3,142,227	-				-0.6
3,142,386	+		DZA65_RS14405	0.15	-0.5
3,142,426	+		DZA65_RS14405	0.21	-0.1
3,142,461	+		DZA65_RS14405	0.26	-0.3
3,142,461	+		DZA65_RS14405	0.26	-1.5
3,142,462	-		DZA65_RS14405	0.26	-0.9
3,142,491	-		DZA65_RS14405	0.30	-1.1
3,142,496	+		DZA65_RS14405	0.31	-0.8
3,142,496	+		DZA65_RS14405	0.31	-1.2
3,142,496	+		DZA65_RS14405	0.31	+0.6
3,142,496	+		DZA65_RS14405	0.31	-0.5
3,142,497	-		DZA65_RS14405	0.31	+0.3
3,142,498	+		DZA65_RS14405	0.31	-0.4
3,142,498	+		DZA65_RS14405	0.31	+0.1
3,142,498	+		DZA65_RS14405	0.31	+0.7
3,142,498	+		DZA65_RS14405	0.31	-1.3
3,142,498	+		DZA65_RS14405	0.31	-1.1
3,142,498	+		DZA65_RS14405	0.31	+0.2
3,142,510	+		DZA65_RS14405	0.33	+0.2
3,142,522	+		DZA65_RS14405	0.35	-1.6
3,142,566	-		DZA65_RS14405	0.41	+0.3
3,142,586	+		DZA65_RS14405	0.44	-0.3
3,142,588	+		DZA65_RS14405	0.45	-0.6
3,142,588	+		DZA65_RS14405	0.45	-1.3
3,142,588	+		DZA65_RS14405	0.45	-0.9
3,142,588	+		DZA65_RS14405	0.45	+0.5
3,142,588	+		DZA65_RS14405	0.45	-1.0
3,142,588	+				+1.4
3,142,589	-		DZA65_RS14405	0.45	-0.3
3,142,589	-		DZA65_RS14405	0.45	+1.8
3,142,592	+		DZA65_RS14405	0.45	-1.0
3,142,593	-		DZA65_RS14405	0.45	-0.1
3,142,614	-		DZA65_RS14405	0.48	+1.2
3,142,629	+		DZA65_RS14405	0.51	-1.3
3,142,637	-		DZA65_RS14405	0.52	+0.8
3,142,658	+		DZA65_RS14405	0.55	-1.0
3,142,658	+		DZA65_RS14405	0.55	-0.9
3,142,658	+		DZA65_RS14405	0.55	-0.5
3,142,658	+		DZA65_RS14405	0.55	-1.3
3,142,659	-		DZA65_RS14405	0.55	-0.5
3,142,715	+		DZA65_RS14405	0.63	+0.0
3,142,715	+		DZA65_RS14405	0.63	-1.0
3,142,716	-		DZA65_RS14405	0.63	-1.2
3,142,716	-		DZA65_RS14405	0.63	-1.8
3,142,726	+		DZA65_RS14405	0.65	+0.6
3,142,736	-		DZA65_RS14405	0.66	+0.2
3,142,785	+		DZA65_RS14405	0.73	-1.1
3,142,785	+		DZA65_RS14405	0.73	+0.5
3,142,786	-		DZA65_RS14405	0.74	-2.5
3,142,786	-		DZA65_RS14405	0.74	+0.4
3,142,789	+		DZA65_RS14405	0.74	+0.2
3,142,790	-		DZA65_RS14405	0.74	-1.8
3,142,790	-		DZA65_RS14405	0.74	-0.2
3,142,790	-		DZA65_RS14405	0.74	-0.2
3,142,792	+		DZA65_RS14405	0.74	-0.8
3,142,828	+		DZA65_RS14405	0.80	+1.7
3,142,860	-		DZA65_RS14405	0.84	+0.8
3,142,860	-		DZA65_RS14405	0.84	-1.1
3,142,865	+		DZA65_RS14405	0.85	-1.7
3,142,934	+				-0.3
3,142,934	+				+0.7
3,142,934	+				+0.8
3,142,934	+				-1.2
3,142,935	-				-0.2
3,142,935	-				-1.1
3,142,989	-				-0.2
3,143,013	-		DZA65_RS14410	0.11	-1.3
3,143,047	+		DZA65_RS14410	0.19	-0.4
3,143,047	+		DZA65_RS14410	0.19	+2.6
3,143,047	+		DZA65_RS14410	0.19	-0.5
3,143,047	+		DZA65_RS14410	0.19	-0.3
3,143,047	+		DZA65_RS14410	0.19	+0.4
3,143,048	-		DZA65_RS14410	0.20	-0.8
3,143,048	-		DZA65_RS14410	0.20	-0.4
3,143,048	-		DZA65_RS14410	0.20	+0.6
3,143,074	+		DZA65_RS14410	0.26	+0.1
3,143,074	+		DZA65_RS14410	0.26	-0.9
3,143,074	+		DZA65_RS14410	0.26	-0.7
3,143,074	+		DZA65_RS14410	0.26	-0.3
3,143,074	+		DZA65_RS14410	0.26	+0.2
3,143,074	+		DZA65_RS14410	0.26	+0.4
3,143,074	+		DZA65_RS14410	0.26	+1.0
3,143,075	-		DZA65_RS14410	0.26	-1.2
3,143,075	-		DZA65_RS14410	0.26	-0.4
3,143,075	-		DZA65_RS14410	0.26	+0.3
3,143,075	-		DZA65_RS14410	0.26	+0.2
3,143,076	+		DZA65_RS14410	0.26	-0.5
3,143,076	+		DZA65_RS14410	0.26	-0.2
3,143,077	-		DZA65_RS14410	0.26	-0.5
3,143,232	+		DZA65_RS14410	0.63	+0.8
3,143,274	+		DZA65_RS14410	0.73	-0.6
3,143,274	+		DZA65_RS14410	0.73	+0.5
3,143,275	-		DZA65_RS14410	0.74	-0.1
3,143,324	+		DZA65_RS14410	0.85	-0.7
3,143,325	-		DZA65_RS14410	0.85	-0.5
3,143,325	-		DZA65_RS14410	0.85	-0.9
3,143,342	-		DZA65_RS14410	0.90	-1.2
3,143,360	+				-1.3
3,143,361	-				-0.5
3,143,361	-				-0.9
3,143,361	-				-1.9
3,143,387	-				+1.0
3,143,387	-				-0.2
3,143,401	-				-0.9
3,143,640	-		DZA65_RS14415	0.13	-0.3
3,143,928	+		DZA65_RS14415	0.35	+0.4