Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13420

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,874,826	+		DZA65_RS13410	0.87	-0.4
2,874,826	+		DZA65_RS13410	0.87	-0.3
2,874,827	-		DZA65_RS13410	0.87	+0.2
2,874,908	+				+0.2
2,875,010	+		DZA65_RS13415	0.11	-0.7
2,875,010	+		DZA65_RS13415	0.11	-0.2
2,875,011	-		DZA65_RS13415	0.11	-0.2
2,875,013	+				-0.6
2,875,029	+		DZA65_RS13415	0.13	-0.8
2,875,029	+		DZA65_RS13415	0.13	+1.6
2,875,029	+		DZA65_RS13415	0.13	-1.0
2,875,029	+		DZA65_RS13415	0.13	+0.8
2,875,029	+		DZA65_RS13415	0.13	-2.2
2,875,029	+		DZA65_RS13415	0.13	-0.8
2,875,030	-		DZA65_RS13415	0.13	-0.7
2,875,030	-		DZA65_RS13415	0.13	+0.4
2,875,030	-		DZA65_RS13415	0.13	-0.2
2,875,030	-		DZA65_RS13415	0.13	-0.5
2,875,030	-		DZA65_RS13415	0.13	-2.2
2,875,030	-		DZA65_RS13415	0.13	-0.6
2,875,091	+		DZA65_RS13415	0.21	+0.1
2,875,228	+		DZA65_RS13415	0.38	-1.4
2,875,443	-		DZA65_RS13415	0.66	-0.2
2,875,792	+				-0.7
2,875,792	+				-0.7
2,875,797	+				-0.3
2,875,797	+				-0.2
2,875,797	+				-0.6
2,875,798	-				-0.6
2,875,798	-				-1.2
2,875,800	+				+1.2
2,875,801	-				-0.1
2,875,801	-				-0.0
2,875,837	-				+0.9
2,875,929	-				-1.8
2,876,322	+		DZA65_RS13420	0.19	-0.1
2,876,323	-		DZA65_RS13420	0.19	+0.4
2,876,323	-		DZA65_RS13420	0.19	-0.3
2,876,375	+		DZA65_RS13420	0.21	+0.4
2,876,375	+		DZA65_RS13420	0.21	-0.2
2,876,376	-		DZA65_RS13420	0.21	-0.4
2,876,433	-		DZA65_RS13420	0.23	+0.4
2,876,456	+		DZA65_RS13420	0.24	-0.8
2,876,456	+		DZA65_RS13420	0.24	-0.9
2,876,457	-		DZA65_RS13420	0.24	-0.7
2,876,458	+		DZA65_RS13420	0.24	-1.5
2,876,459	-		DZA65_RS13420	0.24	-1.2
2,876,711	+		DZA65_RS13420	0.34	-0.6
2,876,711	+		DZA65_RS13420	0.34	-0.6
2,876,711	+		DZA65_RS13420	0.34	-0.7
2,876,711	+		DZA65_RS13420	0.34	+0.8
2,876,711	+		DZA65_RS13420	0.34	+2.8
2,876,711	+		DZA65_RS13420	0.34	-1.0
2,876,711	+		DZA65_RS13420	0.34	-0.0
2,876,711	+		DZA65_RS13420	0.34	-0.7
2,876,711	+		DZA65_RS13420	0.34	-1.0
2,876,711	+		DZA65_RS13420	0.34	-1.7
2,876,712	-		DZA65_RS13420	0.34	-0.0
2,876,712	-		DZA65_RS13420	0.34	-0.2
2,876,712	-		DZA65_RS13420	0.34	-0.6
2,876,712	-		DZA65_RS13420	0.34	+0.3
2,876,712	-		DZA65_RS13420	0.34	-0.8
2,876,712	-		DZA65_RS13420	0.34	-0.4
2,876,712	-		DZA65_RS13420	0.34	-0.5
2,876,712	-		DZA65_RS13420	0.34	+0.8
2,876,712	-		DZA65_RS13420	0.34	-0.7
2,876,712	-		DZA65_RS13420	0.34	-0.2
2,876,712	-		DZA65_RS13420	0.34	-1.2
2,876,804	+		DZA65_RS13420	0.38	-0.6
2,876,804	+		DZA65_RS13420	0.38	-1.6
2,876,804	+		DZA65_RS13420	0.38	-0.5
2,876,805	-		DZA65_RS13420	0.38	+0.0
2,876,805	-		DZA65_RS13420	0.38	-0.5
2,876,805	-		DZA65_RS13420	0.38	-1.9
2,876,815	+		DZA65_RS13420	0.38	-0.8
2,876,966	+		DZA65_RS13420	0.44	+0.6
2,876,966	+				+1.8
2,876,966	+		DZA65_RS13420	0.44	-0.8
2,876,966	+				-0.5
2,876,966	+		DZA65_RS13420	0.44	+0.0
2,876,966	+		DZA65_RS13420	0.44	-2.9
2,876,966	+		DZA65_RS13420	0.44	-1.0
2,876,966	+		DZA65_RS13420	0.44	-2.0
2,876,967	-		DZA65_RS13420	0.44	+0.1
2,876,967	-		DZA65_RS13420	0.44	-0.0
2,876,967	-		DZA65_RS13420	0.44	-0.5
2,876,967	-		DZA65_RS13420	0.44	-0.6
2,876,967	-		DZA65_RS13420	0.44	-0.5
2,876,967	-		DZA65_RS13420	0.44	-0.7
2,876,988	+		DZA65_RS13420	0.45	-0.4
2,877,054	-		DZA65_RS13420	0.47	-1.2
2,877,074	+		DZA65_RS13420	0.48	+0.1
2,877,074	+		DZA65_RS13420	0.48	-0.4
2,877,117	-		DZA65_RS13420	0.50	-0.3
2,877,117	-		DZA65_RS13420	0.50	-0.8
2,877,117	-		DZA65_RS13420	0.50	-0.8
2,877,215	+		DZA65_RS13420	0.53	-0.8
2,877,215	+		DZA65_RS13420	0.53	+0.4
2,877,293	+		DZA65_RS13420	0.56	-0.8
2,877,294	-		DZA65_RS13420	0.56	+0.1
2,877,294	-		DZA65_RS13420	0.56	+0.6
2,877,307	-		DZA65_RS13420	0.57	-0.8
2,877,308	+		DZA65_RS13420	0.57	-2.7
2,877,308	+		DZA65_RS13420	0.57	+0.3
2,877,309	-		DZA65_RS13420	0.57	-0.3
2,877,309	-		DZA65_RS13420	0.57	+1.1
2,877,309	-		DZA65_RS13420	0.57	-0.2
2,877,309	-		DZA65_RS13420	0.57	-2.8
2,877,309	-		DZA65_RS13420	0.57	+0.3
2,877,309	-		DZA65_RS13420	0.57	+0.2
2,877,309	-		DZA65_RS13420	0.57	-0.2
2,877,315	+		DZA65_RS13420	0.57	-1.1
2,877,315	+		DZA65_RS13420	0.57	-0.9
2,877,315	+		DZA65_RS13420	0.57	+0.5
2,877,315	+		DZA65_RS13420	0.57	+0.3
2,877,315	+		DZA65_RS13420	0.57	-0.1
2,877,315	+		DZA65_RS13420	0.57	-0.7
2,877,316	-		DZA65_RS13420	0.57	-1.0
2,877,316	-		DZA65_RS13420	0.57	-0.8
2,877,316	-		DZA65_RS13420	0.57	+0.3
2,877,316	-		DZA65_RS13420	0.57	-1.8
2,877,316	-		DZA65_RS13420	0.57	+1.3
2,877,411	+		DZA65_RS13420	0.61	-1.0
2,877,486	+		DZA65_RS13420	0.64	-0.2
2,877,540	-				-0.2
2,877,540	-		DZA65_RS13420	0.66	-1.6
2,877,540	-		DZA65_RS13420	0.66	-1.0
2,877,540	-		DZA65_RS13420	0.66	+0.8
2,877,540	-		DZA65_RS13420	0.66	-0.3
2,877,540	-		DZA65_RS13420	0.66	-0.6
2,877,572	+		DZA65_RS13420	0.67	+0.0
2,877,572	+		DZA65_RS13420	0.67	-0.8
2,877,572	+		DZA65_RS13420	0.67	+0.8
2,877,573	-		DZA65_RS13420	0.67	+0.4
2,877,573	-		DZA65_RS13420	0.67	-0.6
2,877,573	-		DZA65_RS13420	0.67	-0.5
2,877,573	-		DZA65_RS13420	0.67	-0.8
2,877,573	-		DZA65_RS13420	0.67	-0.4
2,877,573	-		DZA65_RS13420	0.67	+0.1
2,877,573	-		DZA65_RS13420	0.67	+1.0
2,877,611	+		DZA65_RS13420	0.69	-0.5
2,877,611	+		DZA65_RS13420	0.69	-2.7
2,877,611	+		DZA65_RS13420	0.69	+0.5
2,877,611	+		DZA65_RS13420	0.69	-1.8
2,877,611	+		DZA65_RS13420	0.69	-1.1
2,877,611	+		DZA65_RS13420	0.69	+0.0
2,877,611	+		DZA65_RS13420	0.69	-0.2
2,877,611	+		DZA65_RS13420	0.69	-1.0
2,877,611	+		DZA65_RS13420	0.69	-0.9
2,877,611	+		DZA65_RS13420	0.69	-0.6
2,877,611	+		DZA65_RS13420	0.69	+0.2
2,877,611	+		DZA65_RS13420	0.69	+0.1
2,877,611	+		DZA65_RS13420	0.69	-0.0
2,877,611	+		DZA65_RS13420	0.69	+0.6
2,877,611	+		DZA65_RS13420	0.69	-0.6
2,877,611	+		DZA65_RS13420	0.69	-0.2
2,877,611	+		DZA65_RS13420	0.69	-0.0
2,877,611	+		DZA65_RS13420	0.69	+0.3
2,877,612	-		DZA65_RS13420	0.69	-2.0
2,877,612	-		DZA65_RS13420	0.69	-0.6
2,877,612	-		DZA65_RS13420	0.69	-0.6
2,877,612	-		DZA65_RS13420	0.69	-0.5
2,877,612	-		DZA65_RS13420	0.69	-2.7
2,877,612	-		DZA65_RS13420	0.69	-0.7
2,877,612	-		DZA65_RS13420	0.69	-0.4
2,877,612	-		DZA65_RS13420	0.69	-0.8
2,877,612	-		DZA65_RS13420	0.69	+0.3
2,877,612	-		DZA65_RS13420	0.69	+0.3
2,877,612	-		DZA65_RS13420	0.69	-2.0
2,877,612	-		DZA65_RS13420	0.69	-0.7
2,877,612	-		DZA65_RS13420	0.69	+1.1
2,877,612	-		DZA65_RS13420	0.69	-0.8
2,877,684	+		DZA65_RS13420	0.71	+0.8
2,877,684	+		DZA65_RS13420	0.71	+1.9
2,877,684	+		DZA65_RS13420	0.71	-1.0
2,877,684	+		DZA65_RS13420	0.71	+0.3
2,877,684	+		DZA65_RS13420	0.71	-1.4
2,877,685	-		DZA65_RS13420	0.71	-1.0
2,877,685	-		DZA65_RS13420	0.71	+0.6
2,877,685	-		DZA65_RS13420	0.71	-0.7
2,877,685	-		DZA65_RS13420	0.71	-0.6
2,877,685	-		DZA65_RS13420	0.71	-0.8
2,877,686	+		DZA65_RS13420	0.71	-0.1
2,877,686	+		DZA65_RS13420	0.71	-0.2
2,877,686	+		DZA65_RS13420	0.71	-0.2
2,877,686	+		DZA65_RS13420	0.71	-0.2
2,877,686	+		DZA65_RS13420	0.71	+0.2
2,877,686	+		DZA65_RS13420	0.71	+1.3
2,877,686	+		DZA65_RS13420	0.71	-2.6
2,877,686	+		DZA65_RS13420	0.71	+1.3
2,877,686	+		DZA65_RS13420	0.71	-1.0
2,877,686	+		DZA65_RS13420	0.71	-0.2
2,877,686	+		DZA65_RS13420	0.71	-0.5
2,877,686	+		DZA65_RS13420	0.71	-0.8
2,877,687	-		DZA65_RS13420	0.71	-0.8
2,877,687	-		DZA65_RS13420	0.71	+0.8
2,877,687	-		DZA65_RS13420	0.71	-0.8
2,877,687	-		DZA65_RS13420	0.71	-0.1
2,877,687	-		DZA65_RS13420	0.71	-0.4
2,877,687	-		DZA65_RS13420	0.71	-1.2
2,877,687	-		DZA65_RS13420	0.71	+0.4
2,877,687	-		DZA65_RS13420	0.71	-0.4
2,877,687	-		DZA65_RS13420	0.71	-0.6
2,877,687	-		DZA65_RS13420	0.71	-0.3
2,877,690	+		DZA65_RS13420	0.72	+0.6
2,877,690	+		DZA65_RS13420	0.72	-0.2
2,877,690	+		DZA65_RS13420	0.72	-1.6
2,877,702	-		DZA65_RS13420	0.72	+0.2
2,877,702	-		DZA65_RS13420	0.72	-1.1
2,877,702	-		DZA65_RS13420	0.72	-1.7
2,877,702	-		DZA65_RS13420	0.72	+0.2
2,877,881	+		DZA65_RS13420	0.79	-2.8
2,877,881	+		DZA65_RS13420	0.79	+0.1
2,877,881	+		DZA65_RS13420	0.79	-0.1
2,877,882	-		DZA65_RS13420	0.79	-0.8
2,877,882	-		DZA65_RS13420	0.79	-0.7
2,877,882	-		DZA65_RS13420	0.79	-0.5
2,877,913	+		DZA65_RS13420	0.80	-0.4
2,877,914	-		DZA65_RS13420	0.80	-1.1
2,877,975	-		DZA65_RS13420	0.82	-0.9
2,878,000	-		DZA65_RS13420	0.83	+0.1
2,878,012	-		DZA65_RS13420	0.84	-0.7
2,878,043	+		DZA65_RS13420	0.85	-0.0
2,878,043	+		DZA65_RS13420	0.85	-0.2
2,878,043	+		DZA65_RS13420	0.85	+0.0
2,878,043	+		DZA65_RS13420	0.85	+0.1
2,878,046	+		DZA65_RS13420	0.85	-2.1
2,878,046	+		DZA65_RS13420	0.85	-1.1
2,878,046	+		DZA65_RS13420	0.85	-0.4
2,878,046	+		DZA65_RS13420	0.85	-0.5
2,878,046	+		DZA65_RS13420	0.85	+0.6
2,878,046	+		DZA65_RS13420	0.85	-0.8
2,878,046	+		DZA65_RS13420	0.85	-1.8
2,878,046	+		DZA65_RS13420	0.85	-0.8
2,878,046	+		DZA65_RS13420	0.85	-1.6
2,878,046	+		DZA65_RS13420	0.85	-0.2
2,878,046	+		DZA65_RS13420	0.85	-0.4
2,878,046	+		DZA65_RS13420	0.85	+1.3
2,878,047	-		DZA65_RS13420	0.85	-0.5
2,878,047	-		DZA65_RS13420	0.85	-0.8
2,878,047	-		DZA65_RS13420	0.85	-0.1
2,878,047	-		DZA65_RS13420	0.85	-0.6
2,878,047	-		DZA65_RS13420	0.85	-0.1
2,878,047	-		DZA65_RS13420	0.85	-0.2
2,878,047	-		DZA65_RS13420	0.85	-1.3
2,878,047	-		DZA65_RS13420	0.85	-1.8
2,878,047	-		DZA65_RS13420	0.85	-0.0
2,878,047	-		DZA65_RS13420	0.85	+0.1
2,878,047	-		DZA65_RS13420	0.85	-0.2
2,878,047	-		DZA65_RS13420	0.85	+1.0
2,878,083	+		DZA65_RS13420	0.87	-0.3
2,878,106	+		DZA65_RS13420	0.87	+0.3
2,878,106	+		DZA65_RS13420	0.87	-0.7
2,878,106	+		DZA65_RS13420	0.87	-0.8
2,878,106	+		DZA65_RS13420	0.87	+1.1
2,878,106	+		DZA65_RS13420	0.87	-0.6
2,878,106	+		DZA65_RS13420	0.87	-0.4
2,878,107	-		DZA65_RS13420	0.87	-0.3
2,878,107	-		DZA65_RS13420	0.87	-0.2
2,878,107	-		DZA65_RS13420	0.87	-0.8
2,878,107	-		DZA65_RS13420	0.87	+0.5
2,878,107	-		DZA65_RS13420	0.87	+0.2
2,878,252	+				-0.2
2,878,252	+				+0.4
2,878,253	-				+0.3
2,878,253	-				-1.8
2,878,380	+				-0.4
2,878,380	+				-2.9
2,878,380	+				-0.2
2,878,380	+				-0.2
2,878,380	+				+0.1
2,878,380	+				-0.8
2,878,380	+				+0.3
2,878,380	+				-1.1
2,878,381	-				-0.6
2,878,381	-				-0.5
2,878,381	-				+0.0
2,878,381	-				-0.7
2,878,381	-				+0.1
2,878,381	-				-1.6
2,878,381	-				-1.4
2,878,381	-				-1.0
2,878,381	-				+0.1
2,878,381	-				-1.0
2,878,381	-				-0.3
2,878,381	-				-0.0
2,878,381	-				-0.4
2,878,381	-				-1.6
2,878,381	-				-2.2
2,878,381	-				-0.2
2,878,381	-				-0.7
2,878,382	+				+0.6
2,878,383	-				+0.2
2,878,383	-				-0.5
2,878,383	-				-1.0
2,878,383	-				+0.8
2,878,383	-				+0.3
2,878,398	-				-1.0
2,878,409	+				+0.4
2,878,409	+				-0.5
2,878,410	-				-1.2
2,878,442	+				-0.2
2,878,442	+				-1.3
2,878,443	-				+0.5
2,878,443	-				+0.4
2,878,447	+				+1.0
2,878,459	+				-0.1
2,878,459	+				-0.3
2,878,460	-				+0.0
2,878,460	-				-0.8
2,878,460	-				+0.8
2,878,505	+				-0.2
2,878,505	+				-2.9
2,878,505	+				-1.4
2,878,505	+				+0.0
2,878,505	+				-0.0
2,878,505	+				+0.4
2,878,505	+				-1.1
2,878,505	+				-0.0
2,878,505	+				-0.0
2,878,505	+				+0.8
2,878,505	+				+0.5
2,878,505	+				-0.4
2,878,505	+				+0.3
2,878,505	+				-0.9
2,878,505	+				-0.6
2,878,505	+				+0.0
2,878,505	+				+0.2
2,878,505	+				+0.3
2,878,505	+				-0.2
2,878,505	+				-1.0
2,878,506	-				-0.6
2,878,506	-				-1.0
2,878,506	-				-0.3
2,878,506	-				-0.8
2,878,506	-				-0.4
2,878,506	-				-0.4
2,878,506	-				-0.4
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