Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12455

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,661,057	+		DZA65_RS12445	0.56	+0.2
2,661,057	+		DZA65_RS12445	0.56	-0.1
2,661,057	+		DZA65_RS12445	0.56	-0.9
2,661,057	+		DZA65_RS12445	0.56	-2.8
2,661,058	-		DZA65_RS12445	0.57	-1.4
2,661,058	-		DZA65_RS12445	0.57	+1.3
2,661,096	+		DZA65_RS12445	0.63	-1.1
2,661,097	-		DZA65_RS12445	0.63	+0.5
2,661,131	-		DZA65_RS12445	0.70	+0.7
2,661,146	+		DZA65_RS12445	0.72	-2.6
2,661,147	-		DZA65_RS12445	0.72	+0.1
2,661,147	-		DZA65_RS12445	0.72	+0.5
2,661,148	+		DZA65_RS12445	0.73	+0.1
2,661,148	+		DZA65_RS12445	0.73	+1.3
2,661,148	+		DZA65_RS12445	0.73	+1.1
2,661,148	+		DZA65_RS12445	0.73	+0.7
2,661,149	-		DZA65_RS12445	0.73	-1.5
2,661,258	-				-0.6
2,661,279	+				-0.6
2,661,280	-				-1.0
2,661,280	-				-0.4
2,661,366	+				+0.7
2,661,366	+				-2.1
2,661,366	+				+2.0
2,661,366	+				-0.1
2,661,366	+				-0.3
2,661,366	+				-1.6
2,661,366	+				-1.1
2,661,367	-				-0.6
2,661,367	-				+0.5
2,661,367	-				-1.9
2,661,367	-				-0.4
2,661,374	+				-0.4
2,661,375	-				-0.3
2,661,375	-				-1.3
2,661,375	-				+0.1
2,661,413	+				+0.3
2,661,414	-				-0.5
2,661,414	-				+0.8
2,661,414	-				-2.1
2,661,435	+				-0.6
2,661,435	+				-0.4
2,661,435	+				-1.3
2,661,436	-				-0.6
2,661,524	+		DZA65_RS12450	0.22	-0.3
2,661,600	+		DZA65_RS12450	0.33	-0.5
2,661,601	-		DZA65_RS12450	0.34	+0.2
2,661,601	-		DZA65_RS12450	0.34	+0.2
2,661,821	+		DZA65_RS12450	0.66	-2.1
2,661,821	+		DZA65_RS12450	0.66	-0.0
2,661,821	+		DZA65_RS12450	0.66	-0.1
2,661,821	+		DZA65_RS12450	0.66	-1.8
2,661,821	+		DZA65_RS12450	0.66	-0.1
2,661,821	+		DZA65_RS12450	0.66	-0.0
2,661,822	-		DZA65_RS12450	0.66	+0.5
2,661,822	-		DZA65_RS12450	0.66	+0.0
2,661,822	-		DZA65_RS12450	0.66	-0.6
2,661,822	-		DZA65_RS12450	0.66	+0.4
2,661,822	-		DZA65_RS12450	0.66	-1.9
2,661,822	-		DZA65_RS12450	0.66	+0.9
2,661,954	-		DZA65_RS12450	0.86	-0.1
2,661,963	-		DZA65_RS12450	0.87	+0.1
2,661,969	-		DZA65_RS12450	0.88	+0.4
2,662,010	+				-2.3
2,662,010	+				-0.0
2,662,010	+				+1.1
2,662,010	+				+1.0
2,662,011	-				-0.4
2,662,011	-				-0.2
2,662,011	-				+0.0
2,662,011	-				+0.1
2,662,011	-				+0.7
2,662,016	+				+0.5
2,662,016	+				+1.4
2,662,016	+				-0.4
2,662,016	+				+0.5
2,662,016	+				-0.5
2,662,017	-				-0.8
2,662,017	-				-0.1
2,662,017	-				-0.8
2,662,017	-				-0.5
2,662,017	-				-0.5
2,662,017	-				+0.0
2,662,020	+				+1.0
2,662,020	+				+0.2
2,662,021	-				+0.0
2,662,021	-				-0.9
2,662,043	+				-0.8
2,662,043	+				+1.7
2,662,043	+				+0.1
2,662,044	-				+0.9
2,662,236	+		DZA65_RS12455	0.26	-0.7
2,662,290	+		DZA65_RS12455	0.33	+0.4
2,662,290	+		DZA65_RS12455	0.33	+0.8
2,662,290	+		DZA65_RS12455	0.33	+0.7
2,662,290	+		DZA65_RS12455	0.33	+0.4
2,662,291	-		DZA65_RS12455	0.33	+0.5
2,662,291	-		DZA65_RS12455	0.33	+0.7
2,662,291	-		DZA65_RS12455	0.33	+0.5
2,662,310	-		DZA65_RS12455	0.36	-0.1
2,662,411	+		DZA65_RS12455	0.50	-0.4
2,662,412	-		DZA65_RS12455	0.50	+0.1
2,662,412	-		DZA65_RS12455	0.50	-0.1
2,662,421	-		DZA65_RS12455	0.52	-0.2
2,662,618	+		DZA65_RS12455	0.79	+0.6
2,662,733	-				-0.0
2,662,774	+				+0.1
2,662,774	+				-0.3
2,662,774	+				-0.4
2,662,774	+				+0.5
2,662,774	+				-0.0
2,662,775	-				-1.0
2,662,775	-				-0.7
2,662,775	-				-0.2
2,662,775	-				+2.1
2,662,828	+				-0.3
2,662,837	+				-0.3
2,662,977	+		DZA65_RS12460	0.13	-0.7
2,662,977	+				-0.3
2,662,977	+		DZA65_RS12460	0.13	-1.4
2,662,977	+		DZA65_RS12460	0.13	-0.7
2,662,977	+		DZA65_RS12460	0.13	-1.1
2,662,977	+		DZA65_RS12460	0.13	-0.3
2,662,978	-		DZA65_RS12460	0.14	+0.3
2,662,978	-		DZA65_RS12460	0.14	+1.0
2,662,978	-		DZA65_RS12460	0.14	+0.0
2,662,978	-		DZA65_RS12460	0.14	-0.5
2,663,001	+		DZA65_RS12460	0.15	+0.1
2,663,001	+		DZA65_RS12460	0.15	+1.3
2,663,001	+		DZA65_RS12460	0.15	+1.0
2,663,002	-		DZA65_RS12460	0.15	-1.5
2,663,002	-		DZA65_RS12460	0.15	-0.6
2,663,002	-		DZA65_RS12460	0.15	-1.2
2,663,002	-		DZA65_RS12460	0.15	+0.7
2,663,088	+		DZA65_RS12460	0.21	+1.4
2,663,089	-		DZA65_RS12460	0.21	-0.3
2,663,089	-		DZA65_RS12460	0.21	-0.2
2,663,166	+		DZA65_RS12460	0.26	-0.0
2,663,166	+		DZA65_RS12460	0.26	-1.6
2,663,166	+		DZA65_RS12460	0.26	+0.0
2,663,167	-		DZA65_RS12460	0.26	-0.3
2,663,167	-				-0.9
2,663,167	-		DZA65_RS12460	0.26	+0.2
2,663,167	-		DZA65_RS12460	0.26	-1.2
2,663,268	+		DZA65_RS12460	0.32	+0.3
2,663,268	+				+0.3
2,663,268	+		DZA65_RS12460	0.32	-1.5
2,663,268	+		DZA65_RS12460	0.32	-2.1
2,663,268	+		DZA65_RS12460	0.32	-0.7
2,663,269	-		DZA65_RS12460	0.32	-1.2
2,663,269	-		DZA65_RS12460	0.32	-0.9
2,663,269	-		DZA65_RS12460	0.32	+1.2
2,663,269	-		DZA65_RS12460	0.32	-0.2
2,663,269	-		DZA65_RS12460	0.32	-1.2
2,663,269	-		DZA65_RS12460	0.32	-0.9
2,663,269	-		DZA65_RS12460	0.32	-1.0
2,663,269	-		DZA65_RS12460	0.32	-0.8
2,663,273	+		DZA65_RS12460	0.32	-0.8
2,663,273	+		DZA65_RS12460	0.32	+0.7
2,663,273	+		DZA65_RS12460	0.32	-0.8
2,663,274	-		DZA65_RS12460	0.33	+1.3
2,663,274	-		DZA65_RS12460	0.33	-1.9
2,663,274	-		DZA65_RS12460	0.33	-1.0
2,663,340	+		DZA65_RS12460	0.37	-0.3
2,663,340	+		DZA65_RS12460	0.37	-0.3
2,663,340	+		DZA65_RS12460	0.37	-0.4
2,663,340	+		DZA65_RS12460	0.37	+0.9
2,663,340	+		DZA65_RS12460	0.37	-0.2
2,663,341	-		DZA65_RS12460	0.37	+0.5
2,663,454	+		DZA65_RS12460	0.44	-0.9
2,663,454	+		DZA65_RS12460	0.44	+1.3
2,663,455	-		DZA65_RS12460	0.44	+0.0
2,663,455	-		DZA65_RS12460	0.44	+1.1
2,663,475	-		DZA65_RS12460	0.45	-1.0
2,663,475	-		DZA65_RS12460	0.45	+0.1
2,663,509	-		DZA65_RS12460	0.48	-0.3
2,663,516	+		DZA65_RS12460	0.48	-0.4
2,663,516	+		DZA65_RS12460	0.48	-1.7
2,663,516	+		DZA65_RS12460	0.48	-0.4
2,663,516	+		DZA65_RS12460	0.48	-0.2
2,663,516	+		DZA65_RS12460	0.48	-0.7
2,663,517	-		DZA65_RS12460	0.48	+0.3
2,663,517	-		DZA65_RS12460	0.48	+1.0
2,663,517	-		DZA65_RS12460	0.48	+0.8
2,663,517	-		DZA65_RS12460	0.48	-0.0
2,663,517	-		DZA65_RS12460	0.48	-0.1
2,663,517	-		DZA65_RS12460	0.48	-0.8
2,663,517	-		DZA65_RS12460	0.48	+0.5
2,663,517	-		DZA65_RS12460	0.48	-0.9
2,663,517	-		DZA65_RS12460	0.48	-0.1
2,663,517	-		DZA65_RS12460	0.48	+0.9
2,663,527	-		DZA65_RS12460	0.49	+0.3
2,663,635	-		DZA65_RS12460	0.56	-2.1
2,663,646	+		DZA65_RS12460	0.56	-0.4
2,663,686	+		DZA65_RS12460	0.59	+0.2
2,663,687	-		DZA65_RS12460	0.59	-0.1
2,663,687	-		DZA65_RS12460	0.59	+1.0