Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11160

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,364,522	+		DZA65_RS11150	0.80	-0.7
2,364,522	+		DZA65_RS11150	0.80	+0.3
2,364,522	+		DZA65_RS11150	0.80	+1.3
2,364,522	+		DZA65_RS11150	0.80	-1.8
2,364,523	-		DZA65_RS11150	0.80	-0.1
2,364,523	-		DZA65_RS11150	0.80	-0.1
2,364,523	-		DZA65_RS11150	0.80	+0.1
2,364,621	+				-0.5
2,364,621	+				+0.8
2,364,622	-				-0.1
2,364,622	-				-1.4
2,364,622	-				+0.2
2,364,641	+				-0.3
2,364,641	+				+1.1
2,364,642	-				-0.3
2,364,654	+				-0.5
2,364,654	+				-0.4
2,364,654	+				+1.3
2,364,655	-				+0.3
2,364,816	+				-0.7
2,364,817	-				-1.3
2,364,817	-				-1.4
2,364,891	+				-1.1
2,364,892	-				-0.4
2,364,992	-		DZA65_RS11155	0.17	-0.1
2,364,992	-		DZA65_RS11155	0.17	+0.2
2,365,106	+		DZA65_RS11155	0.49	-1.2
2,365,184	+		DZA65_RS11155	0.71	-2.1
2,365,196	+		DZA65_RS11155	0.75	+0.3
2,365,196	+		DZA65_RS11155	0.75	-0.0
2,365,197	-		DZA65_RS11155	0.75	+2.7
2,365,197	-		DZA65_RS11155	0.75	-0.7
2,365,197	-		DZA65_RS11155	0.75	+0.9
2,365,197	-		DZA65_RS11155	0.75	-1.6
2,365,251	-				+0.1
2,365,264	-				-0.5
2,365,264	-				-1.1
2,365,268	+				-0.5
2,365,269	-				+0.7
2,365,269	-				+1.1
2,365,269	-				-0.2
2,365,269	-				-2.5
2,365,269	-				-0.5
2,365,269	-				-1.4
2,365,269	-				+0.3
2,365,269	-				-0.7
2,365,315	+				-1.1
2,365,315	+				+0.2
2,365,316	-				-0.7
2,365,340	+				+0.3
2,365,341	-				+0.3
2,365,341	-				+0.4
2,365,343	+				+0.9
2,365,352	+				+0.5
2,365,353	-				-0.4
2,365,353	-				+0.7
2,365,354	+				-0.3
2,365,354	+				-0.9
2,365,355	-				+0.1
2,365,355	-				+0.4
2,365,355	-				-0.2
2,365,355	-				-0.2
2,365,378	+				+0.3
2,365,378	+				-0.3
2,365,379	-				-0.6
2,365,379	-				-1.3
2,365,379	-				-0.9
2,365,441	+				+0.7
2,365,441	+				-0.2
2,365,493	+				-0.8
2,365,493	+				-0.5
2,365,770	+		DZA65_RS11160	0.37	-0.7
2,365,792	-		DZA65_RS11160	0.40	+0.5
2,365,821	-		DZA65_RS11160	0.44	+0.2
2,365,851	+		DZA65_RS11160	0.48	-0.1
2,365,851	+		DZA65_RS11160	0.48	+0.2
2,365,852	-		DZA65_RS11160	0.48	-0.1
2,365,920	+		DZA65_RS11160	0.57	-0.0
2,365,921	-		DZA65_RS11160	0.57	+0.2
2,365,984	+		DZA65_RS11160	0.66	-0.3
2,365,985	-		DZA65_RS11160	0.66	-0.9
2,366,019	+		DZA65_RS11160	0.70	+0.1
2,366,020	-		DZA65_RS11160	0.70	+1.2
2,366,020	-		DZA65_RS11160	0.70	+0.2
2,366,062	-		DZA65_RS11160	0.76	-0.1
2,366,062	-		DZA65_RS11160	0.76	+0.4
2,366,181	+				+0.9
2,366,306	+				-0.0
2,366,306	+				+0.1
2,366,306	+				-2.3
2,366,306	+				+0.8
2,366,307	-				-0.4
2,366,316	+				-0.1
2,366,316	+				-0.9
2,366,316	+				-1.7
2,366,317	-				-0.1
2,366,317	-				-0.7
2,366,320	+				-1.2
2,366,320	+				-0.8
2,366,320	+				-0.3
2,366,320	+				+0.3
2,366,320	+				-0.1
2,366,320	+				-0.4
2,366,320	+				+0.0
2,366,321	-				+0.5
2,366,321	-				-1.9
2,366,321	-				+0.0
2,366,321	-				-0.7
2,366,321	-				-0.3
2,366,321	-				-0.1
2,366,321	-				-0.6
2,366,390	+				-0.0
2,366,390	+				-0.3
2,366,391	-				-0.9
2,366,391	-				+1.3
2,366,414	-				+0.8
2,366,414	-				-0.3
2,366,459	+				+1.4
2,366,459	+				-0.4
2,366,460	-				+1.4
2,366,460	-				+0.1
2,366,460	-				-0.3
2,366,460	-				+0.5
2,366,469	-				-2.3
2,366,491	+				-0.3
2,366,511	-				-0.0
2,366,546	+				-2.3
2,366,568	+				-0.3
2,366,588	+				-0.9
2,366,588	+				-0.7
2,366,588	+				-0.1
2,366,588	+				+0.3
2,366,589	-				+0.2
2,366,589	-				+0.7
2,366,642	-				-0.4
2,366,672	+		DZA65_RS11165	0.10	-1.2
2,366,672	+		DZA65_RS11165	0.10	-0.7
2,366,672	+		DZA65_RS11165	0.10	-0.1
2,366,673	-		DZA65_RS11165	0.10	+0.1
2,366,673	-		DZA65_RS11165	0.10	-1.2
2,366,674	+		DZA65_RS11165	0.11	-0.2
2,366,674	+		DZA65_RS11165	0.11	-1.3
2,366,675	-		DZA65_RS11165	0.11	+0.1
2,366,675	-		DZA65_RS11165	0.11	-0.6
2,366,675	-		DZA65_RS11165	0.11	-0.3
2,366,691	+		DZA65_RS11165	0.12	-0.3
2,366,713	+		DZA65_RS11165	0.14	-0.4
2,366,713	+		DZA65_RS11165	0.14	+0.3
2,366,713	+		DZA65_RS11165	0.14	-0.7
2,366,714	-		DZA65_RS11165	0.14	+0.8
2,366,731	-		DZA65_RS11165	0.15	-0.3
2,366,807	+		DZA65_RS11165	0.21	-2.3
2,366,807	+		DZA65_RS11165	0.21	-0.3
2,366,807	+		DZA65_RS11165	0.21	+1.0
2,366,807	+		DZA65_RS11165	0.21	-0.6
2,366,808	-		DZA65_RS11165	0.21	-0.1
2,366,808	-		DZA65_RS11165	0.21	-0.7
2,366,808	-		DZA65_RS11165	0.21	+0.3
2,366,808	-		DZA65_RS11165	0.21	-0.5
2,366,839	-		DZA65_RS11165	0.24	-0.6
2,366,874	-		DZA65_RS11165	0.27	+0.7
2,366,949	+		DZA65_RS11165	0.33	-1.8
2,366,949	+		DZA65_RS11165	0.33	-0.3
2,366,949	+		DZA65_RS11165	0.33	-0.9
2,366,950	-		DZA65_RS11165	0.33	-2.5
2,366,950	-		DZA65_RS11165	0.33	-1.7
2,366,957	+		DZA65_RS11165	0.34	+0.7
2,366,957	+		DZA65_RS11165	0.34	+0.7
2,366,958	-		DZA65_RS11165	0.34	-0.4
2,366,958	-		DZA65_RS11165	0.34	+0.1
2,366,985	+		DZA65_RS11165	0.36	+0.2
2,366,985	+		DZA65_RS11165	0.36	+0.7
2,367,070	+		DZA65_RS11165	0.43	-0.4
2,367,070	+		DZA65_RS11165	0.43	+0.8
2,367,071	-		DZA65_RS11165	0.43	-0.1
2,367,071	-		DZA65_RS11165	0.43	-0.7
2,367,071	-		DZA65_RS11165	0.43	+0.9
2,367,071	-		DZA65_RS11165	0.43	+0.2
2,367,071	-		DZA65_RS11165	0.43	+0.3
2,367,123	+		DZA65_RS11165	0.47	+0.2
2,367,123	+		DZA65_RS11165	0.47	-1.7
2,367,123	+		DZA65_RS11165	0.47	-1.8
2,367,123	+		DZA65_RS11165	0.47	-0.4
2,367,123	+		DZA65_RS11165	0.47	-0.3
2,367,124	-		DZA65_RS11165	0.47	+1.3
2,367,125	+		DZA65_RS11165	0.47	-0.9
2,367,125	+		DZA65_RS11165	0.47	+0.3
2,367,125	+		DZA65_RS11165	0.47	-0.0
2,367,125	+		DZA65_RS11165	0.47	+0.7
2,367,125	+		DZA65_RS11165	0.47	+0.5
2,367,125	+		DZA65_RS11165	0.47	+0.4
2,367,125	+		DZA65_RS11165	0.47	+1.4
2,367,126	-		DZA65_RS11165	0.47	-1.1
2,367,126	-		DZA65_RS11165	0.47	+0.5
2,367,126	-		DZA65_RS11165	0.47	+1.3
2,367,134	+		DZA65_RS11165	0.48	-0.6
2,367,135	-		DZA65_RS11165	0.48	+0.5
2,367,135	-		DZA65_RS11165	0.48	-0.7
2,367,135	-		DZA65_RS11165	0.48	-0.3
2,367,233	+		DZA65_RS11165	0.56	-2.2
2,367,234	-		DZA65_RS11165	0.56	-0.7
2,367,236	+		DZA65_RS11165	0.56	-0.5