Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11055

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,338,237	+		DZA65_RS11045	0.81	-0.1
2,338,238	-		DZA65_RS11045	0.81	-0.7
2,338,279	+		DZA65_RS11045	0.84	-1.1
2,338,279	+		DZA65_RS11045	0.84	-1.1
2,338,279	+		DZA65_RS11045	0.84	+0.4
2,338,279	+		DZA65_RS11045	0.84	+1.1
2,338,280	-		DZA65_RS11045	0.84	-0.7
2,338,280	-		DZA65_RS11045	0.84	-0.6
2,338,280	-		DZA65_RS11045	0.84	-0.1
2,338,280	-		DZA65_RS11045	0.84	+0.0
2,338,280	-		DZA65_RS11045	0.84	+0.1
2,338,280	-		DZA65_RS11045	0.84	+1.1
2,338,280	-		DZA65_RS11045	0.84	-0.4
2,338,280	-		DZA65_RS11045	0.84	-1.9
2,338,440	+				+1.9
2,338,440	+				-1.1
2,338,440	+				-1.1
2,338,559	-				-0.0
2,338,659	+		DZA65_RS11050	0.17	-1.0
2,338,660	-		DZA65_RS11050	0.17	-0.4
2,338,660	-		DZA65_RS11050	0.17	+0.8
2,338,660	-		DZA65_RS11050	0.17	-0.7
2,338,730	+		DZA65_RS11050	0.29	-1.0
2,338,730	+		DZA65_RS11050	0.29	-0.7
2,338,730	+		DZA65_RS11050	0.29	-0.3
2,338,730	+		DZA65_RS11050	0.29	+0.6
2,338,730	+		DZA65_RS11050	0.29	-2.3
2,338,734	+		DZA65_RS11050	0.30	-2.5
2,338,734	+		DZA65_RS11050	0.30	-1.7
2,338,734	+		DZA65_RS11050	0.30	-0.4
2,338,735	-		DZA65_RS11050	0.30	-1.5
2,338,735	-		DZA65_RS11050	0.30	-1.3
2,339,322	+		DZA65_RS11055	0.30	-0.6
2,339,322	+		DZA65_RS11055	0.30	-1.5
2,339,323	-		DZA65_RS11055	0.30	-0.3
2,339,323	-		DZA65_RS11055	0.30	-0.4
2,339,323	-		DZA65_RS11055	0.30	+0.2
2,339,323	-		DZA65_RS11055	0.30	-0.0
2,339,323	-		DZA65_RS11055	0.30	-0.5
2,339,402	-		DZA65_RS11055	0.44	-1.1
2,339,513	+		DZA65_RS11055	0.63	-0.8
2,339,513	+		DZA65_RS11055	0.63	-2.3
2,339,513	+		DZA65_RS11055	0.63	-0.6
2,339,513	+		DZA65_RS11055	0.63	-0.5
2,339,514	-		DZA65_RS11055	0.63	-0.3
2,339,518	-		DZA65_RS11055	0.64	-1.1
2,339,544	+		DZA65_RS11055	0.68	+0.0
2,339,544	+		DZA65_RS11055	0.68	-0.9
2,339,544	+		DZA65_RS11055	0.68	-0.3
2,339,544	+				-0.9
2,339,544	+		DZA65_RS11055	0.68	-1.2
2,339,545	-		DZA65_RS11055	0.68	-2.3
2,339,545	-		DZA65_RS11055	0.68	-2.1
2,339,654	+		DZA65_RS11055	0.87	-0.1
2,339,654	+		DZA65_RS11055	0.87	+0.0
2,339,675	+				-1.1
2,339,719	-				-0.8
2,339,719	-				-0.9
2,339,719	-				-0.1
2,339,719	-				-0.3
2,339,719	-				+0.9
2,339,719	-				+0.7
2,339,729	+				+1.2
2,339,729	+				-0.8
2,339,730	-				-0.2
2,339,730	-				-0.5
2,339,739	-				+0.5
2,339,788	+				+0.5
2,339,788	+				-0.2
2,339,789	-				-0.8
2,339,797	+				-2.3
2,339,797	+				+0.4
2,339,839	-				-0.6
2,340,005	+				-0.2
2,340,075	+				-0.1
2,340,075	+				-0.9
2,340,075	+				-0.5
2,340,075	+				-2.3
2,340,076	-				+0.4
2,340,076	-				+1.4
2,340,076	-				-0.5
2,340,076	-				-0.9
2,340,076	-				+0.4
2,340,086	-				+0.7
2,340,093	+				-1.2
2,340,093	+				+1.0
2,340,093	+				-0.0
2,340,094	-				-0.9
2,340,094	-				+0.0
2,340,094	-				-1.7
2,340,094	-				+0.1
2,340,094	-				-1.0
2,340,094	-				-0.3
2,340,094	-				-0.5
2,340,094	-				+0.7
2,340,103	+				+0.4
2,340,104	-				-0.8
2,340,107	+				-0.3
2,340,107	+				-1.0
2,340,108	-				-2.7
2,340,108	-				-0.2
2,340,108	-				-0.3
2,340,108	-				+0.1
2,340,108	-				+0.4
2,340,108	-				+1.1
2,340,108	-				+0.3
2,340,108	-				-0.5
2,340,108	-				-1.7
2,340,111	+				+0.7
2,340,111	+				-0.7
2,340,111	+				-0.2
2,340,111	+				-0.4
2,340,111	+				-0.3
2,340,112	-				-0.6
2,340,112	-				-0.2
2,340,112	-				+0.1
2,340,112	-				-1.2
2,340,112	-				+0.2
2,340,121	+				+0.1
2,340,121	+				-0.3
2,340,121	+				-1.5
2,340,122	-				-0.1
2,340,122	-				-0.5
2,340,122	-				-0.3
2,340,127	+				-0.1
2,340,127	+				-0.0
2,340,127	+				-0.6
2,340,127	+				-0.9
2,340,127	+				-1.3
2,340,127	+				-1.6
2,340,127	+				+1.0
2,340,127	+				-0.7
2,340,127	+				-0.3
2,340,127	+				+0.3
2,340,128	-				-0.7
2,340,128	-				-0.3
2,340,128	-				-0.1
2,340,128	-				+1.0
2,340,128	-				-1.1
2,340,128	-				-0.8
2,340,128	-				-1.1
2,340,143	+				-0.3
2,340,143	+				-0.5
2,340,143	+				+0.9
2,340,143	+				+0.7
2,340,143	+				-1.7
2,340,143	+				-0.2
2,340,143	+				+0.7
2,340,143	+				-0.2
2,340,144	-				+0.5
2,340,144	-				-1.5
2,340,144	-				-1.1
2,340,144	-				-0.0
2,340,144	-				+0.0
2,340,144	-				-0.8
2,340,144	-				-0.6
2,340,144	-				-0.8
2,340,208	+				-1.0
2,340,286	+				+0.8
2,340,286	+				+0.5
2,340,287	-				+1.0
2,340,287	-				-0.4
2,340,320	-		DZA65_RS11060	0.11	+0.1
2,340,375	-		DZA65_RS11060	0.14	+0.2
2,340,378	-		DZA65_RS11060	0.15	-1.1
2,340,444	+		DZA65_RS11060	0.18	-0.6
2,340,444	+		DZA65_RS11060	0.18	-0.6
2,340,445	-		DZA65_RS11060	0.19	-0.9
2,340,445	-		DZA65_RS11060	0.19	+0.5
2,340,455	+				+0.7
2,340,455	+		DZA65_RS11060	0.19	-1.4
2,340,456	-		DZA65_RS11060	0.19	-0.0
2,340,456	-		DZA65_RS11060	0.19	-0.8
2,340,528	-		DZA65_RS11060	0.23	-0.1
2,340,528	-		DZA65_RS11060	0.23	-1.3
2,340,529	+		DZA65_RS11060	0.23	-0.8
2,340,529	+		DZA65_RS11060	0.23	-1.3
2,340,529	+		DZA65_RS11060	0.23	-1.1
2,340,529	+		DZA65_RS11060	0.23	+2.2
2,340,529	+		DZA65_RS11060	0.23	-0.1
2,340,529	+		DZA65_RS11060	0.23	+0.2
2,340,529	+		DZA65_RS11060	0.23	-1.1
2,340,529	+		DZA65_RS11060	0.23	-0.2
2,340,530	-		DZA65_RS11060	0.23	+0.7
2,340,530	-		DZA65_RS11060	0.23	-0.1
2,340,530	-		DZA65_RS11060	0.23	+3.0
2,340,530	-		DZA65_RS11060	0.23	-0.5
2,340,533	+		DZA65_RS11060	0.24	+0.2
2,340,533	+		DZA65_RS11060	0.24	-1.3
2,340,533	+		DZA65_RS11060	0.24	+0.7
2,340,533	+		DZA65_RS11060	0.24	-1.7
2,340,533	+		DZA65_RS11060	0.24	-0.5
2,340,533	+		DZA65_RS11060	0.24	-0.9
2,340,534	-		DZA65_RS11060	0.24	+0.2
2,340,534	-		DZA65_RS11060	0.24	-0.9
2,340,534	-		DZA65_RS11060	0.24	-0.5
2,340,569	-		DZA65_RS11060	0.26	-1.2
2,340,591	+		DZA65_RS11060	0.27	+0.7
2,340,591	+		DZA65_RS11060	0.27	-0.6
2,340,592	-		DZA65_RS11060	0.27	+0.2
2,340,592	-		DZA65_RS11060	0.27	-0.8
2,340,592	-		DZA65_RS11060	0.27	+0.0
2,340,622	+		DZA65_RS11060	0.29	-1.4
2,340,623	-		DZA65_RS11060	0.29	-1.7
2,340,671	-		DZA65_RS11060	0.32	-0.8
2,340,708	+		DZA65_RS11060	0.34	+0.1
2,340,722	+		DZA65_RS11060	0.35	+0.1
2,340,722	+		DZA65_RS11060	0.35	-0.3
2,340,722	+		DZA65_RS11060	0.35	-0.3
2,340,723	-		DZA65_RS11060	0.35	+0.7