Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10435

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,211,112	+		DZA65_RS10430	0.47	-0.3
2,211,112	+		DZA65_RS10430	0.47	-0.6
2,211,112	+		DZA65_RS10430	0.47	-0.1
2,211,112	+				+0.1
2,211,112	+		DZA65_RS10430	0.47	-0.0
2,211,113	-		DZA65_RS10430	0.47	+0.1
2,211,113	-		DZA65_RS10430	0.47	-0.6
2,211,182	+		DZA65_RS10430	0.51	+0.1
2,211,183	-		DZA65_RS10430	0.51	-0.3
2,211,183	-		DZA65_RS10430	0.51	-0.3
2,211,231	+		DZA65_RS10430	0.54	+0.4
2,211,231	+		DZA65_RS10430	0.54	-0.7
2,211,232	-		DZA65_RS10430	0.54	-0.9
2,211,232	-		DZA65_RS10430	0.54	-0.6
2,211,232	-		DZA65_RS10430	0.54	-0.6
2,211,270	+		DZA65_RS10430	0.56	+0.5
2,211,284	+		DZA65_RS10430	0.57	-0.5
2,211,284	+		DZA65_RS10430	0.57	-0.3
2,211,284	+		DZA65_RS10430	0.57	-0.3
2,211,284	+		DZA65_RS10430	0.57	-1.5
2,211,284	+		DZA65_RS10430	0.57	-0.4
2,211,284	+		DZA65_RS10430	0.57	-1.1
2,211,284	+		DZA65_RS10430	0.57	-1.6
2,211,284	+		DZA65_RS10430	0.57	-0.2
2,211,284	+		DZA65_RS10430	0.57	-0.3
2,211,285	-		DZA65_RS10430	0.57	-1.3
2,211,285	-		DZA65_RS10430	0.57	-0.9
2,211,285	-		DZA65_RS10430	0.57	+0.9
2,211,285	-		DZA65_RS10430	0.57	+0.7
2,211,285	-		DZA65_RS10430	0.57	-1.0
2,211,285	-		DZA65_RS10430	0.57	+0.0
2,211,285	-		DZA65_RS10430	0.57	+0.7
2,211,285	-		DZA65_RS10430	0.57	-0.8
2,211,285	-		DZA65_RS10430	0.57	-1.5
2,211,285	-		DZA65_RS10430	0.57	+0.2
2,211,285	-		DZA65_RS10430	0.57	-0.7
2,211,285	-		DZA65_RS10430	0.57	+0.2
2,211,285	-		DZA65_RS10430	0.57	-0.0
2,211,285	-		DZA65_RS10430	0.57	-1.2
2,211,285	-		DZA65_RS10430	0.57	+0.6
2,211,285	-		DZA65_RS10430	0.57	+0.0
2,211,305	+		DZA65_RS10430	0.58	-0.7
2,211,306	-		DZA65_RS10430	0.58	-0.6
2,211,306	-		DZA65_RS10430	0.58	+0.4
2,211,351	+		DZA65_RS10430	0.61	-0.3
2,211,360	+		DZA65_RS10430	0.61	-1.2
2,211,360	+		DZA65_RS10430	0.61	-1.3
2,211,366	+		DZA65_RS10430	0.62	-0.8
2,211,367	-		DZA65_RS10430	0.62	-1.5
2,211,367	-		DZA65_RS10430	0.62	-0.2
2,211,367	-		DZA65_RS10430	0.62	+1.9
2,211,396	+		DZA65_RS10430	0.64	+0.3
2,211,397	-		DZA65_RS10430	0.64	-0.6
2,211,397	-		DZA65_RS10430	0.64	-1.2
2,211,416	+		DZA65_RS10430	0.65	+0.2
2,211,513	-		DZA65_RS10430	0.70	+0.4
2,211,513	-		DZA65_RS10430	0.70	+0.0
2,211,515	+		DZA65_RS10430	0.70	-2.1
2,211,515	+		DZA65_RS10430	0.70	+3.0
2,211,516	-		DZA65_RS10430	0.70	+0.9
2,211,516	-		DZA65_RS10430	0.70	-0.5
2,211,516	-		DZA65_RS10430	0.70	-0.5
2,211,530	+		DZA65_RS10430	0.71	+0.2
2,211,530	+		DZA65_RS10430	0.71	-1.0
2,211,530	+		DZA65_RS10430	0.71	-1.0
2,211,530	+		DZA65_RS10430	0.71	+0.7
2,211,531	-		DZA65_RS10430	0.71	+1.1
2,211,531	-		DZA65_RS10430	0.71	-0.8
2,211,531	-		DZA65_RS10430	0.71	-0.4
2,211,648	+		DZA65_RS10430	0.78	-0.5
2,211,649	-		DZA65_RS10430	0.78	+0.3
2,211,690	+		DZA65_RS10430	0.80	+0.1
2,211,690	+		DZA65_RS10430	0.80	-1.1
2,211,703	-		DZA65_RS10430	0.81	-0.2
2,211,707	+		DZA65_RS10430	0.81	-0.3
2,211,707	+		DZA65_RS10430	0.81	-0.0
2,211,708	-		DZA65_RS10430	0.81	+0.4
2,211,708	-		DZA65_RS10430	0.81	-1.8
2,211,708	-		DZA65_RS10430	0.81	-0.6
2,211,708	-		DZA65_RS10430	0.81	-0.5
2,211,799	+		DZA65_RS10430	0.86	+0.1
2,211,810	+		DZA65_RS10430	0.87	-0.1
2,211,810	+		DZA65_RS10430	0.87	-0.6
2,211,810	+		DZA65_RS10430	0.87	-1.2
2,211,810	+		DZA65_RS10430	0.87	-0.1
2,211,810	+		DZA65_RS10430	0.87	-0.3
2,211,810	+		DZA65_RS10430	0.87	-0.5
2,211,810	+		DZA65_RS10430	0.87	+0.9
2,211,810	+		DZA65_RS10430	0.87	-1.8
2,211,810	+		DZA65_RS10430	0.87	+0.2
2,211,810	+		DZA65_RS10430	0.87	-0.4
2,211,810	+		DZA65_RS10430	0.87	-0.5
2,211,810	+		DZA65_RS10430	0.87	-1.9
2,211,810	+		DZA65_RS10430	0.87	-0.3
2,211,810	+		DZA65_RS10430	0.87	+0.5
2,211,810	+		DZA65_RS10430	0.87	-0.9
2,211,810	+		DZA65_RS10430	0.87	+0.3
2,211,810	+		DZA65_RS10430	0.87	-0.9
2,211,811	-		DZA65_RS10430	0.87	+1.1
2,211,811	-		DZA65_RS10430	0.87	-0.5
2,211,811	-		DZA65_RS10430	0.87	+0.7
2,211,811	-		DZA65_RS10430	0.87	+0.1
2,211,811	-		DZA65_RS10430	0.87	-2.3
2,211,811	-		DZA65_RS10430	0.87	-1.6
2,211,811	-		DZA65_RS10430	0.87	-0.5
2,211,811	-		DZA65_RS10430	0.87	+0.5
2,211,811	-		DZA65_RS10430	0.87	+0.1
2,211,811	-		DZA65_RS10430	0.87	-0.2
2,211,811	-		DZA65_RS10430	0.87	+0.3
2,211,811	-		DZA65_RS10430	0.87	-0.4
2,211,811	-		DZA65_RS10430	0.87	+1.7
2,211,811	-		DZA65_RS10430	0.87	-0.3
2,211,811	-		DZA65_RS10430	0.87	-0.9
2,211,813	+		DZA65_RS10430	0.87	+0.3
2,211,813	+		DZA65_RS10430	0.87	-0.4
2,211,813	+		DZA65_RS10430	0.87	-1.5
2,211,814	-		DZA65_RS10430	0.87	+0.0
2,211,814	-		DZA65_RS10430	0.87	-0.8
2,211,864	+				+0.4
2,211,865	-				-1.5
2,211,875	+				-0.7
2,211,875	+				+0.2
2,211,876	-				-0.3
2,211,876	-				-1.2
2,211,907	+				-0.5
2,211,984	-				+0.7
2,212,035	+				+0.0
2,212,035	+				-1.4
2,212,036	-				-1.1
2,212,138	+				-0.4
2,212,193	-		DZA65_RS10435	0.12	+0.9
2,212,193	-		DZA65_RS10435	0.12	-0.6
2,212,193	-		DZA65_RS10435	0.12	+0.1
2,212,338	+		DZA65_RS10435	0.25	-0.5
2,212,338	+		DZA65_RS10435	0.25	+1.0
2,212,339	-		DZA65_RS10435	0.25	-0.6
2,212,343	+		DZA65_RS10435	0.25	-0.3
2,212,343	+		DZA65_RS10435	0.25	-0.0
2,212,343	+		DZA65_RS10435	0.25	+0.8
2,212,450	-		DZA65_RS10435	0.35	-0.8
2,212,546	+		DZA65_RS10435	0.43	+1.3
2,212,546	+		DZA65_RS10435	0.43	+0.1
2,212,546	+		DZA65_RS10435	0.43	+0.5
2,212,546	+		DZA65_RS10435	0.43	-0.2
2,212,546	+		DZA65_RS10435	0.43	-0.3
2,212,547	-		DZA65_RS10435	0.43	+0.4
2,212,547	-		DZA65_RS10435	0.43	+1.1
2,212,547	-		DZA65_RS10435	0.43	+1.7
2,212,686	+		DZA65_RS10435	0.55	+0.4
2,212,780	+		DZA65_RS10435	0.64	-0.3
2,212,956	+		DZA65_RS10435	0.79	+0.4
2,212,960	+		DZA65_RS10435	0.79	-0.1
2,212,960	+		DZA65_RS10435	0.79	+0.1
2,212,960	+		DZA65_RS10435	0.79	-0.5
2,212,960	+		DZA65_RS10435	0.79	+0.7
2,212,960	+		DZA65_RS10435	0.79	-2.3
2,212,960	+		DZA65_RS10435	0.79	-0.7
2,212,960	+		DZA65_RS10435	0.79	-0.1
2,212,960	+		DZA65_RS10435	0.79	-0.1
2,212,960	+		DZA65_RS10435	0.79	+0.5
2,212,960	+		DZA65_RS10435	0.79	-0.5
2,212,960	+		DZA65_RS10435	0.79	+0.3
2,212,961	-		DZA65_RS10435	0.80	+1.9
2,212,961	-		DZA65_RS10435	0.80	-0.1
2,212,961	-		DZA65_RS10435	0.80	+0.7
2,212,961	-		DZA65_RS10435	0.80	+0.5
2,212,961	-		DZA65_RS10435	0.80	-0.3
2,212,961	-		DZA65_RS10435	0.80	-1.6
2,212,961	-		DZA65_RS10435	0.80	+0.4
2,212,961	-		DZA65_RS10435	0.80	-0.5
2,212,961	-		DZA65_RS10435	0.80	+0.5
2,212,961	-		DZA65_RS10435	0.80	+0.1
2,212,961	-		DZA65_RS10435	0.80	-1.0
2,212,963	-		DZA65_RS10435	0.80	+1.4
2,213,053	+		DZA65_RS10435	0.88	-1.0
2,213,053	+		DZA65_RS10435	0.88	-0.9
2,213,053	+		DZA65_RS10435	0.88	+0.2
2,213,054	-		DZA65_RS10435	0.88	-0.8
2,213,191	+				-0.8
2,213,192	-				+0.3
2,213,209	+				-2.5
2,213,301	+				+0.1
2,213,301	+				+0.4
2,213,301	+				-0.3
2,213,302	-				-1.0
2,213,302	-				+0.5
2,213,302	-				-0.5
2,213,322	+				-0.4
2,213,322	+				-0.2
2,213,322	+				-0.3
2,213,322	+				-0.9
2,213,322	+				-1.0
2,213,323	-				-1.3
2,213,323	-				+0.2
2,213,323	-				-0.1
2,213,323	-				-1.5
2,213,323	-				-0.5
2,213,323	-				+0.2
2,213,343	+				+0.7
2,213,343	+				-0.1
2,213,364	+				+1.7
2,213,364	+				-2.2
2,213,365	-				+0.9
2,213,385	+				+0.1
2,213,385	+				+0.5
2,213,386	-				+0.2
2,213,386	-				-0.5
2,213,389	-				-0.2
2,213,389	-				+1.3
2,213,389	-				+3.0
2,213,389	-				-0.1
2,213,423	+				-2.3
2,213,424	-				-0.1
2,213,424	-				-0.3
2,213,487	+				-0.8
2,213,488	-				+0.5
2,213,562	+		DZA65_RS10440	0.12	+0.6
2,213,563	-		DZA65_RS10440	0.12	-0.7
2,213,594	+		DZA65_RS10440	0.14	-1.4
2,213,594	+		DZA65_RS10440	0.14	-0.6
2,213,595	-		DZA65_RS10440	0.14	-1.0
2,213,595	-		DZA65_RS10440	0.14	-1.8
2,213,657	+		DZA65_RS10440	0.18	-0.1
2,213,657	+		DZA65_RS10440	0.18	-0.6
2,213,658	-		DZA65_RS10440	0.19	-1.4
2,213,759	+		DZA65_RS10440	0.26	+0.7
2,213,810	+		DZA65_RS10440	0.30	-0.9
2,213,810	+		DZA65_RS10440	0.30	-0.6
2,213,810	+		DZA65_RS10440	0.30	-0.3
2,213,810	+		DZA65_RS10440	0.30	-1.8
2,213,810	+		DZA65_RS10440	0.30	-0.6
2,213,810	+		DZA65_RS10440	0.30	-0.1
2,213,810	+		DZA65_RS10440	0.30	-0.6
2,213,810	+		DZA65_RS10440	0.30	-0.5
2,213,810	+				+1.7
2,213,811	-		DZA65_RS10440	0.30	+0.4
2,213,811	-		DZA65_RS10440	0.30	-0.3
2,213,925	+		DZA65_RS10440	0.38	-2.6
2,213,925	+		DZA65_RS10440	0.38	-2.1
2,213,925	+		DZA65_RS10440	0.38	+0.2
2,213,925	+		DZA65_RS10440	0.38	-0.1
2,213,926	-		DZA65_RS10440	0.38	+0.4
2,213,926	-		DZA65_RS10440	0.38	+0.5
2,213,926	-		DZA65_RS10440	0.38	-0.1
2,213,926	-		DZA65_RS10440	0.38	-1.3
2,213,926	-		DZA65_RS10440	0.38	+0.1
2,213,926	-		DZA65_RS10440	0.38	-0.4
2,213,926	-		DZA65_RS10440	0.38	-0.3
2,213,926	-		DZA65_RS10440	0.38	-1.1