Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10015

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,119,611	+				-1.6
2,119,936	-				-0.8
2,119,947	+				-0.5
2,119,947	+				-0.3
2,119,947	+				+2.0
2,119,947	+				-1.9
2,119,948	-				-0.9
2,119,964	-				+1.0
2,119,964	-				+0.5
2,119,967	+				+0.3
2,119,967	+				-0.6
2,119,967	+				-1.3
2,119,967	+				+0.0
2,119,968	-				-1.9
2,119,968	-				+0.0
2,119,986	-				-2.1
2,119,986	-				-0.7
2,120,086	+				-0.0
2,120,087	-				+0.0
2,120,087	-				-0.1
2,120,118	-				+0.1
2,120,276	-				-0.3
2,120,276	-				-0.0
2,120,278	-				-0.1
2,120,347	+				-1.4
2,120,350	+				-0.4
2,120,350	+				-1.9
2,120,351	-				+0.4
2,120,365	+				-0.7
2,120,446	+				-0.9
2,120,446	+				-0.9
2,120,446	+				-0.9
2,120,447	-				-1.1
2,120,448	+				-0.3
2,120,448	+				+1.4
2,120,449	-				-1.4
2,120,449	-				+0.1
2,120,503	-		DZA65_RS10015	0.12	-0.3
2,120,573	+		DZA65_RS10015	0.15	+1.0
2,120,573	+		DZA65_RS10015	0.15	-1.5
2,120,573	+		DZA65_RS10015	0.15	-2.0
2,120,574	-		DZA65_RS10015	0.15	-1.5
2,120,579	+		DZA65_RS10015	0.15	+0.7
2,120,580	-		DZA65_RS10015	0.16	+0.5
2,120,580	-		DZA65_RS10015	0.16	-0.1
2,120,580	-		DZA65_RS10015	0.16	-0.7
2,120,580	-		DZA65_RS10015	0.16	+0.4
2,120,580	-		DZA65_RS10015	0.16	+0.0
2,120,619	+		DZA65_RS10015	0.18	+0.3
2,120,619	+		DZA65_RS10015	0.18	+0.1
2,120,620	-		DZA65_RS10015	0.18	+0.2
2,120,641	+		DZA65_RS10015	0.19	-0.7
2,120,672	-		DZA65_RS10015	0.20	-0.5
2,120,680	+		DZA65_RS10015	0.21	-0.1
2,120,768	+		DZA65_RS10015	0.25	-0.3
2,120,768	+		DZA65_RS10015	0.25	+1.1
2,120,769	-		DZA65_RS10015	0.25	-0.7
2,120,822	+		DZA65_RS10015	0.28	-0.0
2,120,822	+		DZA65_RS10015	0.28	-2.5
2,120,822	+		DZA65_RS10015	0.28	-0.4
2,120,823	-		DZA65_RS10015	0.28	+0.5
2,120,823	-		DZA65_RS10015	0.28	-0.3
2,120,823	-		DZA65_RS10015	0.28	-0.4
2,120,823	-		DZA65_RS10015	0.28	-1.9
2,120,823	-		DZA65_RS10015	0.28	-0.1
2,120,824	+		DZA65_RS10015	0.28	-0.7
2,120,824	+		DZA65_RS10015	0.28	+0.7
2,120,825	-		DZA65_RS10015	0.28	+0.3
2,120,825	-		DZA65_RS10015	0.28	-0.1
2,120,848	+		DZA65_RS10015	0.29	+1.0
2,120,849	-		DZA65_RS10015	0.29	+0.5
2,120,899	+		DZA65_RS10015	0.32	-0.5
2,120,900	-		DZA65_RS10015	0.32	-0.3
2,120,917	-		DZA65_RS10015	0.33	-1.3
2,120,922	+		DZA65_RS10015	0.33	-0.6
2,120,922	+		DZA65_RS10015	0.33	+1.4
2,120,923	-		DZA65_RS10015	0.33	-0.7
2,120,926	+		DZA65_RS10015	0.33	-2.5
2,120,927	-		DZA65_RS10015	0.33	+0.6
2,120,927	-		DZA65_RS10015	0.33	-1.9
2,120,966	+		DZA65_RS10015	0.35	-0.3
2,120,966	+		DZA65_RS10015	0.35	-1.6
2,120,967	-		DZA65_RS10015	0.35	+0.0
2,120,967	-		DZA65_RS10015	0.35	+0.2
2,120,967	-		DZA65_RS10015	0.35	+0.1
2,120,968	+		DZA65_RS10015	0.35	-0.1
2,120,968	+		DZA65_RS10015	0.35	+0.2
2,120,968	+		DZA65_RS10015	0.35	+0.1
2,120,968	+		DZA65_RS10015	0.35	+0.2
2,120,968	+		DZA65_RS10015	0.35	-0.3
2,120,969	-		DZA65_RS10015	0.36	-0.1
2,120,971	+		DZA65_RS10015	0.36	-3.0
2,120,971	+		DZA65_RS10015	0.36	-0.8
2,121,002	+		DZA65_RS10015	0.37	-0.4
2,121,003	-		DZA65_RS10015	0.37	+1.1
2,121,003	-		DZA65_RS10015	0.37	+0.6
2,121,003	-		DZA65_RS10015	0.37	-2.7
2,121,003	-		DZA65_RS10015	0.37	+0.5
2,121,005	+		DZA65_RS10015	0.37	-0.4
2,121,005	+		DZA65_RS10015	0.37	-0.1
2,121,005	+		DZA65_RS10015	0.37	-0.5
2,121,005	+		DZA65_RS10015	0.37	+1.0
2,121,006	-		DZA65_RS10015	0.37	-0.6
2,121,006	-		DZA65_RS10015	0.37	+0.3
2,121,006	-		DZA65_RS10015	0.37	+0.5
2,121,007	+		DZA65_RS10015	0.38	-1.2
2,121,013	+		DZA65_RS10015	0.38	-1.7
2,121,014	-		DZA65_RS10015	0.38	+0.7
2,121,047	-		DZA65_RS10015	0.40	-0.9
2,121,047	-		DZA65_RS10015	0.40	-0.7
2,121,047	-		DZA65_RS10015	0.40	-0.9
2,121,047	-		DZA65_RS10015	0.40	-0.5
2,121,060	+		DZA65_RS10015	0.40	-1.0
2,121,067	+		DZA65_RS10015	0.41	-1.5
2,121,068	-		DZA65_RS10015	0.41	-0.1
2,121,148	+		DZA65_RS10015	0.45	+0.1
2,121,148	+		DZA65_RS10015	0.45	+0.6
2,121,149	-		DZA65_RS10015	0.45	+0.3
2,121,149	-		DZA65_RS10015	0.45	-0.1
2,121,151	-		DZA65_RS10015	0.45	-0.0
2,121,183	-		DZA65_RS10015	0.47	-0.3
2,121,186	+		DZA65_RS10015	0.47	+0.5
2,121,186	+		DZA65_RS10015	0.47	-0.0
2,121,187	-		DZA65_RS10015	0.47	+0.2
2,121,187	-		DZA65_RS10015	0.47	+0.7
2,121,241	-		DZA65_RS10015	0.50	-0.3
2,121,252	+		DZA65_RS10015	0.50	+0.7
2,121,345	-		DZA65_RS10015	0.55	+0.5
2,121,388	+		DZA65_RS10015	0.57	-0.7
2,121,389	-		DZA65_RS10015	0.57	-0.5
2,121,435	+		DZA65_RS10015	0.60	+0.5
2,121,435	+		DZA65_RS10015	0.60	-0.6
2,121,454	+		DZA65_RS10015	0.61	+1.6
2,121,455	-		DZA65_RS10015	0.61	-0.6
2,121,457	+		DZA65_RS10015	0.61	+0.3
2,121,457	+		DZA65_RS10015	0.61	-0.3
2,121,462	-		DZA65_RS10015	0.61	-0.3
2,121,529	+		DZA65_RS10015	0.64	-0.5
2,121,530	-		DZA65_RS10015	0.64	-1.6
2,121,530	-		DZA65_RS10015	0.64	-1.1
2,121,557	+		DZA65_RS10015	0.66	-0.0
2,121,557	+		DZA65_RS10015	0.66	-1.9
2,121,557	+		DZA65_RS10015	0.66	-0.9
2,121,559	+		DZA65_RS10015	0.66	-0.9
2,121,559	+		DZA65_RS10015	0.66	+0.4
2,121,559	+		DZA65_RS10015	0.66	-0.5
2,121,560	-		DZA65_RS10015	0.66	-1.2
2,121,560	-		DZA65_RS10015	0.66	-0.7
2,121,560	-		DZA65_RS10015	0.66	-0.0
2,121,560	-		DZA65_RS10015	0.66	-0.5
2,121,560	-		DZA65_RS10015	0.66	+0.9
2,121,608	-		DZA65_RS10015	0.68	-1.2
2,121,650	+		DZA65_RS10015	0.71	+0.2
2,121,650	+		DZA65_RS10015	0.71	+0.1
2,121,650	+		DZA65_RS10015	0.71	-0.6
2,121,650	+		DZA65_RS10015	0.71	+0.1
2,121,650	+		DZA65_RS10015	0.71	+0.2
2,121,651	-		DZA65_RS10015	0.71	-1.1
2,121,651	-		DZA65_RS10015	0.71	-1.5
2,121,713	-		DZA65_RS10015	0.74	+0.0
2,121,774	+		DZA65_RS10015	0.77	+0.5
2,121,774	+		DZA65_RS10015	0.77	-0.6
2,121,774	+		DZA65_RS10015	0.77	-0.0
2,121,774	+		DZA65_RS10015	0.77	+1.6
2,121,774	+		DZA65_RS10015	0.77	+1.7
2,121,774	+		DZA65_RS10015	0.77	+0.7
2,121,775	-		DZA65_RS10015	0.77	-0.9
2,121,775	-		DZA65_RS10015	0.77	-1.7
2,121,775	-		DZA65_RS10015	0.77	+0.3
2,121,787	+		DZA65_RS10015	0.78	+0.3
2,121,788	-		DZA65_RS10015	0.78	+0.5
2,121,837	+		DZA65_RS10015	0.80	-0.0
2,121,856	+		DZA65_RS10015	0.81	+0.7
2,121,857	-		DZA65_RS10015	0.81	+0.0
2,121,857	-		DZA65_RS10015	0.81	-0.1
2,121,857	-		DZA65_RS10015	0.81	-1.6
2,122,016	+		DZA65_RS10015	0.89	+0.7
2,122,016	+		DZA65_RS10015	0.89	+0.2
2,122,017	-		DZA65_RS10015	0.90	-0.5
2,122,017	-		DZA65_RS10015	0.90	-0.5
2,122,017	-		DZA65_RS10015	0.90	-1.3
2,122,115	+				+0.3
2,122,115	+				-1.2
2,122,199	+				+0.2
2,122,200	-				+1.0
2,122,217	+				+0.8
2,122,217	+				+0.7
2,122,218	-				-2.3
2,122,245	+				-1.3
2,122,246	-				-0.7
2,122,268	+				-0.6
2,122,272	+				-0.9
2,122,273	-				-1.0
2,122,276	+				-0.3
2,122,276	+				-0.0
2,122,276	+				-1.0
2,122,276	+				-1.5
2,122,276	+				-0.2
2,122,277	-				-0.7
2,122,277	-				-0.6
2,122,277	-				-0.2
2,122,277	-				-1.2
2,122,303	-				-0.5
2,122,303	-				+0.3
2,122,306	+				+0.4
2,122,307	-				+2.3
2,122,339	+				+1.3
2,122,355	+				-1.3
2,122,374	-				+0.7
2,122,446	+		DZA65_RS10020	0.15	-0.2
2,122,446	+		DZA65_RS10020	0.15	+0.0
2,122,447	-		DZA65_RS10020	0.15	-0.7
2,122,447	-		DZA65_RS10020	0.15	+1.2
2,122,447	-		DZA65_RS10020	0.15	-0.3
2,122,448	+		DZA65_RS10020	0.16	+0.9
2,122,448	+		DZA65_RS10020	0.16	+0.0
2,122,448	+		DZA65_RS10020	0.16	-0.2
2,122,449	-		DZA65_RS10020	0.16	+0.3
2,122,533	+		DZA65_RS10020	0.30	-1.3
2,122,533	+		DZA65_RS10020	0.30	-2.0
2,122,533	+		DZA65_RS10020	0.30	-1.5
2,122,533	+		DZA65_RS10020	0.30	-0.2
2,122,534	-		DZA65_RS10020	0.30	-1.4
2,122,550	+		DZA65_RS10020	0.33	-0.3
2,122,550	+		DZA65_RS10020	0.33	+0.0
2,122,568	-		DZA65_RS10020	0.35	-0.6
2,122,614	-		DZA65_RS10020	0.43	+0.1
2,122,629	+		DZA65_RS10020	0.46	-0.8
2,122,629	+		DZA65_RS10020	0.46	+0.3
2,122,629	+		DZA65_RS10020	0.46	-1.1
2,122,629	+		DZA65_RS10020	0.46	-0.1
2,122,630	-		DZA65_RS10020	0.46	-0.6
2,122,630	-		DZA65_RS10020	0.46	+3.0
2,122,630	-		DZA65_RS10020	0.46	-0.5
2,122,630	-		DZA65_RS10020	0.46	-2.5
2,122,632	-		DZA65_RS10020	0.46	+0.6
2,122,632	-		DZA65_RS10020	0.46	+0.3
2,122,641	+		DZA65_RS10020	0.48	-2.1
2,122,641	+		DZA65_RS10020	0.48	-0.3
2,122,642	-		DZA65_RS10020	0.48	-1.0
2,122,642	-		DZA65_RS10020	0.48	-0.9
2,122,642	-		DZA65_RS10020	0.48	-0.3
2,122,642	-		DZA65_RS10020	0.48	-1.6
2,122,642	-		DZA65_RS10020	0.48	-0.5
2,122,675	+		DZA65_RS10020	0.53	+0.4
2,122,676	-		DZA65_RS10020	0.53	-0.6
2,122,683	+		DZA65_RS10020	0.55	-0.7
2,122,683	+		DZA65_RS10020	0.55	-0.7
2,122,683	+		DZA65_RS10020	0.55	-0.1
2,122,683	+		DZA65_RS10020	0.55	-0.3
2,122,683	+		DZA65_RS10020	0.55	+0.4
2,122,684	-		DZA65_RS10020	0.55	-1.2
2,122,684	-		DZA65_RS10020	0.55	-1.5
2,122,684	-		DZA65_RS10020	0.55	+0.4
2,122,686	-		DZA65_RS10020	0.55	-0.3
2,122,686	-		DZA65_RS10020	0.55	+0.0
2,122,686	-		DZA65_RS10020	0.55	-0.1
2,122,686	-		DZA65_RS10020	0.55	+0.2
2,122,686	-		DZA65_RS10020	0.55	-0.2
2,122,686	-		DZA65_RS10020	0.55	-1.7
2,122,689	+		DZA65_RS10020	0.56	-1.4
2,122,689	+		DZA65_RS10020	0.56	+0.6
2,122,690	-		DZA65_RS10020	0.56	-1.4
2,122,710	-				+0.1
2,122,726	-		DZA65_RS10020	0.62	-0.6
2,122,726	-		DZA65_RS10020	0.62	+0.3
2,122,739	+		DZA65_RS10020	0.64	-0.7
2,122,739	+		DZA65_RS10020	0.64	-2.0
2,122,739	+		DZA65_RS10020	0.64	-1.3
2,122,739	+		DZA65_RS10020	0.64	-0.3
2,122,740	-				-0.3
2,122,740	-		DZA65_RS10020	0.64	-0.4
2,122,785	+		DZA65_RS10020	0.71	-0.1
2,122,794	+		DZA65_RS10020	0.73	-0.5
2,122,794	+		DZA65_RS10020	0.73	-0.3
2,122,795	-		DZA65_RS10020	0.73	+0.4
2,122,795	-		DZA65_RS10020	0.73	-0.5
2,122,795	-		DZA65_RS10020	0.73	+0.6
2,122,825	+		DZA65_RS10020	0.78	-0.3
2,122,825	+		DZA65_RS10020	0.78	-0.1
2,122,825	+		DZA65_RS10020	0.78	-0.4
2,122,825	+		DZA65_RS10020	0.78	+1.6
2,122,841	+		DZA65_RS10020	0.81	-0.3
2,122,841	+		DZA65_RS10020	0.81	-0.8
2,122,842	-				-0.3
2,122,842	-		DZA65_RS10020	0.81	-1.0
2,122,845	+		DZA65_RS10020	0.81	-0.5
2,122,845	+		DZA65_RS10020	0.81	-2.7
2,122,845	+		DZA65_RS10020	0.81	-0.3
2,122,845	+		DZA65_RS10020	0.81	-1.9
2,122,845	+		DZA65_RS10020	0.81	-1.3
2,122,846	-		DZA65_RS10020	0.82	-0.2
2,122,846	-		DZA65_RS10020	0.82	-0.4
2,122,846	-		DZA65_RS10020	0.82	+0.5
2,122,846	-		DZA65_RS10020	0.82	+1.7
2,122,846	-		DZA65_RS10020	0.82	+0.2
2,122,846	-		DZA65_RS10020	0.82	+0.2
2,122,846	-		DZA65_RS10020	0.82	-1.6
2,122,846	-		DZA65_RS10020	0.82	+0.5
2,122,846	-		DZA65_RS10020	0.82	+1.0
2,122,846	-		DZA65_RS10020	0.82	-1.1
2,122,860	+		DZA65_RS10020	0.84	-2.1
2,122,951	+				-0.5
2,122,951	+				-1.6
2,122,951	+				-0.0
2,122,952	-				+0.3
2,122,952	-				-0.2
2,122,952	-				-0.9
2,122,967	+				-0.2
2,122,989	+				+0.3
2,123,019	+				-0.4
2,123,101	-				-1.3
2,123,101	-				+0.7
2,123,156	+				+0.7
2,123,157	-				+0.7