Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09815

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,068,164	+		DZA65_RS09805	0.73	-1.2
2,068,164	+		DZA65_RS09805	0.73	+0.6
2,068,165	-		DZA65_RS09805	0.73	-0.5
2,068,250	+		DZA65_RS09805	0.83	-2.6
2,068,250	+		DZA65_RS09805	0.83	+0.4
2,068,250	+		DZA65_RS09805	0.83	-0.4
2,068,250	+		DZA65_RS09805	0.83	+0.4
2,068,251	-		DZA65_RS09805	0.83	-1.6
2,068,251	-		DZA65_RS09805	0.83	-0.4
2,068,295	+		DZA65_RS09805	0.88	+1.0
2,068,295	+		DZA65_RS09805	0.88	-1.1
2,068,295	+		DZA65_RS09805	0.88	+0.7
2,068,296	-		DZA65_RS09805	0.88	-0.4
2,068,445	+				-0.9
2,068,446	-				-2.7
2,068,486	+				-0.5
2,068,486	+				-1.2
2,068,486	+				-0.7
2,068,486	+				+0.4
2,068,487	-				+2.0
2,068,491	+				+0.0
2,068,491	+				-1.6
2,068,492	-				+0.3
2,068,785	+		DZA65_RS09810	0.60	+0.2
2,068,786	-		DZA65_RS09810	0.61	-0.3
2,068,786	-		DZA65_RS09810	0.61	-1.3
2,068,816	+		DZA65_RS09810	0.67	+0.5
2,068,909	+		DZA65_RS09810	0.89	+0.0
2,068,910	-		DZA65_RS09810	0.89	-0.6
2,069,016	+				-0.1
2,069,017	-				-0.9
2,069,036	+				-0.5
2,069,036	+				-0.3
2,069,043	+				-0.2
2,069,044	-				+0.1
2,069,044	-				-0.8
2,069,058	-				-1.3
2,069,058	-				-1.3
2,069,064	+				-0.4
2,069,099	+				-2.4
2,069,099	+				-1.5
2,069,099	+				-0.5
2,069,099	+				-0.3
2,069,100	-				-0.1
2,069,100	-				-0.9
2,069,100	-				-0.0
2,069,100	-				-2.0
2,069,100	-				-2.1
2,069,173	+				-1.6
2,069,173	+				-0.3
2,069,174	-				+2.7
2,069,174	-				+0.2
2,069,174	-				-0.9
2,069,175	+				-0.7
2,069,175	+				-0.6
2,069,175	+				-2.1
2,069,218	+				-1.5
2,069,328	+		DZA65_RS09815	0.15	-0.4
2,069,334	+		DZA65_RS09815	0.16	+0.2
2,069,426	-		DZA65_RS09815	0.24	-0.9
2,069,452	-		DZA65_RS09815	0.26	+0.7
2,069,457	-		DZA65_RS09815	0.26	+0.7
2,069,494	+		DZA65_RS09815	0.30	-1.1
2,069,494	+		DZA65_RS09815	0.30	-0.3
2,069,494	+		DZA65_RS09815	0.30	-0.2
2,069,494	+		DZA65_RS09815	0.30	-1.9
2,069,495	-		DZA65_RS09815	0.30	+0.4
2,069,527	+		DZA65_RS09815	0.33	+1.3
2,069,527	+		DZA65_RS09815	0.33	-0.1
2,069,527	+		DZA65_RS09815	0.33	+1.3
2,069,528	-		DZA65_RS09815	0.33	+0.2
2,069,528	-		DZA65_RS09815	0.33	+0.6
2,069,670	+		DZA65_RS09815	0.45	+0.3
2,069,670	+		DZA65_RS09815	0.45	+0.7
2,069,671	-		DZA65_RS09815	0.45	+0.3
2,069,752	-		DZA65_RS09815	0.53	-1.8
2,069,767	+		DZA65_RS09815	0.54	-0.1
2,069,767	+		DZA65_RS09815	0.54	-2.1
2,069,767	+		DZA65_RS09815	0.54	-1.3
2,069,767	+		DZA65_RS09815	0.54	-0.4
2,069,767	+		DZA65_RS09815	0.54	+0.1
2,069,767	+		DZA65_RS09815	0.54	-0.1
2,069,768	-		DZA65_RS09815	0.54	+0.8
2,069,768	-		DZA65_RS09815	0.54	-1.3
2,069,768	-		DZA65_RS09815	0.54	-0.2
2,069,768	-		DZA65_RS09815	0.54	-2.1
2,069,821	+		DZA65_RS09815	0.59	+0.5
2,069,821	+		DZA65_RS09815	0.59	+0.0
2,069,821	+		DZA65_RS09815	0.59	-1.1
2,069,821	+		DZA65_RS09815	0.59	+0.9
2,069,822	-		DZA65_RS09815	0.59	-0.7
2,069,822	-		DZA65_RS09815	0.59	-0.9
2,069,862	+		DZA65_RS09815	0.62	+0.5
2,070,027	+		DZA65_RS09815	0.77	+0.1
2,070,028	-		DZA65_RS09815	0.77	+0.4
2,070,028	-		DZA65_RS09815	0.77	+0.5
2,070,115	+		DZA65_RS09815	0.85	+1.5
2,070,115	+		DZA65_RS09815	0.85	-1.4
2,070,116	-		DZA65_RS09815	0.85	-0.6
2,070,126	+		DZA65_RS09815	0.86	-2.1
2,070,139	+		DZA65_RS09815	0.87	+0.9
2,070,148	+		DZA65_RS09815	0.88	+0.9
2,070,148	+		DZA65_RS09815	0.88	-0.4
2,070,148	+		DZA65_RS09815	0.88	-0.4
2,070,209	+				-1.5
2,070,209	+				-0.7
2,070,210	-				+0.5
2,070,210	-				-0.0
2,070,210	-				-0.4
2,070,210	-				-0.5
2,070,224	+				+0.4
2,070,224	+				-0.1
2,070,224	+				+0.7
2,070,231	+				-0.3
2,070,231	+				+1.1
2,070,231	+				-1.4
2,070,253	+				+0.2
2,070,302	+				+0.3
2,070,303	-				-0.1
2,070,303	-				-1.0
2,070,349	+				-0.9
2,070,374	+				+1.5
2,070,442	+		DZA65_RS09820	0.12	-0.8
2,070,443	-		DZA65_RS09820	0.12	+0.4
2,070,451	+		DZA65_RS09820	0.13	-1.1
2,070,452	-		DZA65_RS09820	0.13	+0.5
2,070,547	+		DZA65_RS09820	0.21	-0.0
2,070,547	+		DZA65_RS09820	0.21	+1.0
2,070,548	-		DZA65_RS09820	0.21	-0.6
2,070,548	-		DZA65_RS09820	0.21	-1.0
2,070,548	-		DZA65_RS09820	0.21	-0.9
2,070,548	-		DZA65_RS09820	0.21	-0.5
2,070,571	+		DZA65_RS09820	0.23	-2.1
2,070,575	-		DZA65_RS09820	0.23	+0.6
2,070,575	-		DZA65_RS09820	0.23	-1.0
2,070,575	-		DZA65_RS09820	0.23	-1.3
2,070,651	+		DZA65_RS09820	0.29	+0.9
2,070,651	+		DZA65_RS09820	0.29	-0.2
2,070,651	+		DZA65_RS09820	0.29	-2.1
2,070,651	+		DZA65_RS09820	0.29	-1.7
2,070,652	-				+0.3
2,070,652	-		DZA65_RS09820	0.29	-0.7
2,070,652	-		DZA65_RS09820	0.29	+0.5
2,070,652	-		DZA65_RS09820	0.29	-1.5
2,070,652	-		DZA65_RS09820	0.29	-1.3
2,070,652	-		DZA65_RS09820	0.29	-1.1
2,070,704	+		DZA65_RS09820	0.34	+0.7
2,070,704	+		DZA65_RS09820	0.34	-0.3
2,070,704	+		DZA65_RS09820	0.34	-0.4
2,070,704	+		DZA65_RS09820	0.34	-0.5
2,070,705	-		DZA65_RS09820	0.34	-1.2
2,070,705	-		DZA65_RS09820	0.34	+0.3
2,070,705	-		DZA65_RS09820	0.34	-1.2
2,070,705	-		DZA65_RS09820	0.34	-0.9
2,070,705	-		DZA65_RS09820	0.34	-1.2
2,070,746	-		DZA65_RS09820	0.37	+0.9
2,070,746	-		DZA65_RS09820	0.37	+1.1
2,070,792	+				-0.9
2,070,807	+				+0.3
2,070,807	+		DZA65_RS09820	0.42	-0.4
2,070,808	-		DZA65_RS09820	0.42	-0.5
2,070,811	+		DZA65_RS09820	0.43	-0.2
2,070,812	-		DZA65_RS09820	0.43	+0.1
2,070,839	+		DZA65_RS09820	0.45	-0.0
2,070,859	+		DZA65_RS09820	0.47	-1.3
2,070,860	-		DZA65_RS09820	0.47	+0.3
2,070,860	-		DZA65_RS09820	0.47	+0.1
2,071,009	+		DZA65_RS09820	0.59	-2.1
2,071,009	+		DZA65_RS09820	0.59	+0.5
2,071,051	-		DZA65_RS09820	0.63	-0.8