Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09285

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,957,051	+		DZA65_RS09280	0.26	-0.2
1,957,052	-		DZA65_RS09280	0.26	+0.0
1,957,052	-		DZA65_RS09280	0.26	-1.4
1,957,052	-		DZA65_RS09280	0.26	-0.4
1,957,052	-		DZA65_RS09280	0.26	-0.3
1,957,052	-		DZA65_RS09280	0.26	-2.7
1,957,052	-		DZA65_RS09280	0.26	-0.5
1,957,108	+		DZA65_RS09280	0.31	+1.3
1,957,108	+		DZA65_RS09280	0.31	-0.2
1,957,108	+		DZA65_RS09280	0.31	-1.8
1,957,108	+		DZA65_RS09280	0.31	+1.4
1,957,109	-		DZA65_RS09280	0.31	+0.7
1,957,109	-		DZA65_RS09280	0.31	+0.5
1,957,109	-		DZA65_RS09280	0.31	+0.4
1,957,109	-		DZA65_RS09280	0.31	+0.2
1,957,109	-		DZA65_RS09280	0.31	-0.3
1,957,109	-		DZA65_RS09280	0.31	-1.7
1,957,109	-		DZA65_RS09280	0.31	-0.3
1,957,187	+		DZA65_RS09280	0.38	-1.6
1,957,187	+		DZA65_RS09280	0.38	-1.0
1,957,187	+		DZA65_RS09280	0.38	-1.3
1,957,187	+		DZA65_RS09280	0.38	+1.3
1,957,187	+		DZA65_RS09280	0.38	+0.3
1,957,187	+		DZA65_RS09280	0.38	+0.3
1,957,187	+		DZA65_RS09280	0.38	-0.6
1,957,187	+		DZA65_RS09280	0.38	+0.9
1,957,187	+		DZA65_RS09280	0.38	-1.0
1,957,187	+		DZA65_RS09280	0.38	+0.4
1,957,188	-		DZA65_RS09280	0.38	-0.5
1,957,188	-		DZA65_RS09280	0.38	+0.7
1,957,188	-		DZA65_RS09280	0.38	+0.2
1,957,188	-				-1.1
1,957,188	-		DZA65_RS09280	0.38	-0.5
1,957,262	+		DZA65_RS09280	0.44	+0.3
1,957,262	+		DZA65_RS09280	0.44	+1.0
1,957,276	+		DZA65_RS09280	0.45	+0.4
1,957,276	+		DZA65_RS09280	0.45	+0.2
1,957,276	+		DZA65_RS09280	0.45	-0.4
1,957,303	-		DZA65_RS09280	0.48	+0.3
1,957,348	-		DZA65_RS09280	0.51	-1.7
1,957,394	+		DZA65_RS09280	0.55	-0.3
1,957,394	+		DZA65_RS09280	0.55	-0.1
1,957,394	+		DZA65_RS09280	0.55	+0.0
1,957,394	+		DZA65_RS09280	0.55	-2.3
1,957,395	-		DZA65_RS09280	0.55	+0.2
1,957,395	-		DZA65_RS09280	0.55	-0.1
1,957,395	-		DZA65_RS09280	0.55	+0.6
1,957,395	-		DZA65_RS09280	0.55	+0.7
1,957,395	-		DZA65_RS09280	0.55	-0.4
1,957,395	-		DZA65_RS09280	0.55	-1.3
1,957,395	-		DZA65_RS09280	0.55	+0.2
1,957,441	+		DZA65_RS09280	0.59	-0.3
1,957,441	+		DZA65_RS09280	0.59	+1.1
1,957,441	+		DZA65_RS09280	0.59	+0.7
1,957,441	+		DZA65_RS09280	0.59	+1.3
1,957,442	-		DZA65_RS09280	0.59	-0.1
1,957,442	-		DZA65_RS09280	0.59	-0.2
1,957,442	-		DZA65_RS09280	0.59	+0.6
1,957,517	-		DZA65_RS09280	0.66	-1.6
1,957,517	-		DZA65_RS09280	0.66	+0.7
1,957,769	+		DZA65_RS09280	0.87	-0.1
1,957,770	-		DZA65_RS09280	0.87	-1.8
1,957,770	-		DZA65_RS09280	0.87	+0.0
1,957,770	-		DZA65_RS09280	0.87	+0.6
1,957,770	-		DZA65_RS09280	0.87	-0.7
1,957,771	+		DZA65_RS09280	0.87	+0.0
1,957,772	-		DZA65_RS09280	0.87	-0.0
1,957,919	+				-0.3
1,957,919	+				-0.1
1,957,919	+				-0.8
1,957,919	+				-0.6
1,957,919	+				-0.3
1,957,919	+				-0.4
1,957,920	-				+0.9
1,957,920	-				-0.9
1,957,920	-				-1.3
1,957,920	-				-0.1
1,957,930	-				-0.8
1,957,946	-				+0.0
1,957,978	+				-0.4
1,957,978	+				-1.4
1,957,979	-				-1.1
1,958,057	-		DZA65_RS09285	0.10	-0.1
1,958,069	+		DZA65_RS09285	0.11	-1.1
1,958,069	+		DZA65_RS09285	0.11	-0.1
1,958,069	+		DZA65_RS09285	0.11	+0.8
1,958,070	-		DZA65_RS09285	0.11	+0.3
1,958,070	-		DZA65_RS09285	0.11	-0.6
1,958,070	-		DZA65_RS09285	0.11	-0.3
1,958,074	+				+0.7
1,958,105	+		DZA65_RS09285	0.13	-0.3
1,958,105	+		DZA65_RS09285	0.13	+0.7
1,958,106	-		DZA65_RS09285	0.13	+0.3
1,958,106	-		DZA65_RS09285	0.13	-1.7
1,958,277	+		DZA65_RS09285	0.25	-2.1
1,958,278	-		DZA65_RS09285	0.25	-0.5
1,958,278	-		DZA65_RS09285	0.25	-0.5
1,958,347	+		DZA65_RS09285	0.30	-0.4
1,958,347	+		DZA65_RS09285	0.30	+0.2
1,958,347	+		DZA65_RS09285	0.30	+0.2
1,958,347	+		DZA65_RS09285	0.30	-0.1
1,958,348	-		DZA65_RS09285	0.30	-0.3
1,958,348	-		DZA65_RS09285	0.30	+0.6
1,958,451	-		DZA65_RS09285	0.37	-1.0
1,958,451	-		DZA65_RS09285	0.37	+0.7
1,958,451	-		DZA65_RS09285	0.37	+0.9
1,958,451	-		DZA65_RS09285	0.37	-0.3
1,958,451	-		DZA65_RS09285	0.37	-0.3
1,958,459	+		DZA65_RS09285	0.38	-0.2
1,958,460	-		DZA65_RS09285	0.38	+0.7
1,958,460	-		DZA65_RS09285	0.38	+0.5
1,958,469	+		DZA65_RS09285	0.39	+0.3
1,958,469	+		DZA65_RS09285	0.39	-0.6
1,958,470	-		DZA65_RS09285	0.39	+0.3
1,958,470	-		DZA65_RS09285	0.39	+1.2
1,958,470	-		DZA65_RS09285	0.39	+0.5
1,958,470	-		DZA65_RS09285	0.39	+0.7
1,958,470	-		DZA65_RS09285	0.39	+1.0
1,958,470	-		DZA65_RS09285	0.39	+0.7
1,958,472	+		DZA65_RS09285	0.39	-1.0
1,958,473	-		DZA65_RS09285	0.39	-0.7
1,958,473	-		DZA65_RS09285	0.39	+0.1
1,958,480	-		DZA65_RS09285	0.39	+0.2
1,958,612	+		DZA65_RS09285	0.48	-0.4
1,958,612	+		DZA65_RS09285	0.48	+0.6
1,958,613	-		DZA65_RS09285	0.49	-1.1
1,958,613	-		DZA65_RS09285	0.49	-0.1
1,958,629	+		DZA65_RS09285	0.50	+2.0
1,958,629	+		DZA65_RS09285	0.50	-1.7
1,958,629	+		DZA65_RS09285	0.50	-0.9
1,958,630	-		DZA65_RS09285	0.50	+0.7
1,958,630	-		DZA65_RS09285	0.50	+0.3
1,958,630	-		DZA65_RS09285	0.50	+0.3
1,958,737	+		DZA65_RS09285	0.57	-0.3
1,958,738	-		DZA65_RS09285	0.57	+0.1
1,958,738	-		DZA65_RS09285	0.57	+0.6
1,958,800	-		DZA65_RS09285	0.61	-0.1
1,958,839	-		DZA65_RS09285	0.64	+0.5
1,958,949	+		DZA65_RS09285	0.72	-0.5
1,958,949	+		DZA65_RS09285	0.72	-0.6
1,958,949	+		DZA65_RS09285	0.72	-0.1
1,958,949	+		DZA65_RS09285	0.72	+0.5
1,958,950	-		DZA65_RS09285	0.72	-0.3
1,958,950	-		DZA65_RS09285	0.72	-0.8
1,958,986	+		DZA65_RS09285	0.74	+1.2
1,958,986	+		DZA65_RS09285	0.74	+0.3
1,958,987	-		DZA65_RS09285	0.74	-0.2
1,959,031	+		DZA65_RS09285	0.77	+1.2
1,959,031	+		DZA65_RS09285	0.77	-0.5
1,959,031	+		DZA65_RS09285	0.77	+0.0
1,959,032	-		DZA65_RS09285	0.78	+0.4
1,959,032	-		DZA65_RS09285	0.78	+0.7
1,959,032	-		DZA65_RS09285	0.78	-0.3
1,959,032	-		DZA65_RS09285	0.78	-1.0
1,959,032	-		DZA65_RS09285	0.78	+1.9
1,959,037	+		DZA65_RS09285	0.78	+0.1
1,959,037	+		DZA65_RS09285	0.78	-0.1
1,959,037	+		DZA65_RS09285	0.78	-0.3
1,959,037	+		DZA65_RS09285	0.78	-0.8
1,959,037	+		DZA65_RS09285	0.78	+1.0
1,959,037	+		DZA65_RS09285	0.78	+1.0
1,959,037	+		DZA65_RS09285	0.78	+0.3
1,959,037	+		DZA65_RS09285	0.78	+0.2
1,959,037	+		DZA65_RS09285	0.78	-0.7
1,959,037	+		DZA65_RS09285	0.78	-0.7
1,959,037	+		DZA65_RS09285	0.78	+0.4
1,959,037	+		DZA65_RS09285	0.78	+0.2
1,959,038	-		DZA65_RS09285	0.78	+0.7
1,959,038	-		DZA65_RS09285	0.78	-0.6
1,959,038	-		DZA65_RS09285	0.78	-1.0
1,959,038	-		DZA65_RS09285	0.78	-0.6
1,959,038	-		DZA65_RS09285	0.78	+1.1
1,959,038	-		DZA65_RS09285	0.78	+0.3
1,959,038	-		DZA65_RS09285	0.78	-2.1
1,959,038	-		DZA65_RS09285	0.78	-0.1
1,959,038	-		DZA65_RS09285	0.78	-0.5
1,959,038	-		DZA65_RS09285	0.78	+0.2
1,959,038	-		DZA65_RS09285	0.78	-0.8
1,959,038	-		DZA65_RS09285	0.78	+0.2
1,959,040	+		DZA65_RS09285	0.78	-0.4
1,959,040	+		DZA65_RS09285	0.78	-0.1
1,959,040	+		DZA65_RS09285	0.78	+0.1
1,959,040	+		DZA65_RS09285	0.78	-0.4
1,959,041	-		DZA65_RS09285	0.78	-1.3
1,959,041	-		DZA65_RS09285	0.78	+1.0
1,959,041	-		DZA65_RS09285	0.78	-1.2
1,959,102	-		DZA65_RS09285	0.82	-0.8
1,959,104	+		DZA65_RS09285	0.83	-0.4
1,959,105	-		DZA65_RS09285	0.83	-0.9
1,959,105	-		DZA65_RS09285	0.83	-1.1
1,959,223	-				-0.4
1,959,276	+				-1.3
1,959,337	+				-0.8
1,959,337	+				-0.5
1,959,337	+				-0.3
1,959,338	-				-1.4
1,959,338	-				-3.4
1,959,354	+				+0.7
1,959,354	+				-0.1
1,959,382	+				-0.7
1,959,382	+				-2.8
1,959,382	+				-1.3
1,959,382	+				-1.6
1,959,382	+				-1.4
1,959,382	+				-0.1
1,959,383	-				-1.3
1,959,383	-				-2.3
1,959,383	-				-0.5
1,959,383	-				-0.4
1,959,383	-				-0.1
1,959,383	-				-0.5
1,959,383	-				-0.2
1,959,504	+		DZA65_RS09290	0.12	-0.1
1,959,505	-		DZA65_RS09290	0.13	-1.1
1,959,505	-		DZA65_RS09290	0.13	-0.3
1,959,538	+		DZA65_RS09290	0.15	-0.3
1,959,538	+		DZA65_RS09290	0.15	-0.5
1,959,538	+		DZA65_RS09290	0.15	-0.3
1,959,538	+		DZA65_RS09290	0.15	-0.1
1,959,539	-		DZA65_RS09290	0.15	-1.4
1,959,539	-		DZA65_RS09290	0.15	-0.5
1,959,539	-		DZA65_RS09290	0.15	-0.7
1,959,567	+		DZA65_RS09290	0.17	-0.0
1,959,567	+		DZA65_RS09290	0.17	+0.3
1,959,567	+		DZA65_RS09290	0.17	+0.0
1,959,568	-				+2.3
1,959,568	-		DZA65_RS09290	0.18	+0.3
1,959,603	-		DZA65_RS09290	0.20	+1.1
1,959,603	-		DZA65_RS09290	0.20	+0.9
1,959,607	-		DZA65_RS09290	0.21	+0.0
1,959,607	-		DZA65_RS09290	0.21	-0.5
1,959,607	-		DZA65_RS09290	0.21	-0.5
1,959,708	-		DZA65_RS09290	0.29	-1.0
1,959,708	-		DZA65_RS09290	0.29	+1.4
1,959,708	-		DZA65_RS09290	0.29	+0.7
1,959,818	-		DZA65_RS09290	0.37	-0.1
1,959,832	-		DZA65_RS09290	0.38	-0.3
1,959,989	+				+0.7
1,960,027	+		DZA65_RS09290	0.54	+0.2
1,960,027	+		DZA65_RS09290	0.54	+0.0
1,960,058	+		DZA65_RS09290	0.56	-1.6
1,960,058	+		DZA65_RS09290	0.56	-0.6
1,960,059	-		DZA65_RS09290	0.56	-0.8
1,960,059	-		DZA65_RS09290	0.56	+0.1
1,960,059	-		DZA65_RS09290	0.56	-0.1
1,960,059	-		DZA65_RS09290	0.56	-1.3
1,960,097	+		DZA65_RS09290	0.59	-0.0
1,960,098	-		DZA65_RS09290	0.59	-1.5
1,960,262	+		DZA65_RS09290	0.72	+0.3
1,960,284	+		DZA65_RS09290	0.74	-1.7
1,960,284	+		DZA65_RS09290	0.74	+0.2
1,960,285	-		DZA65_RS09290	0.74	-0.2
1,960,288	+		DZA65_RS09290	0.74	+0.2
1,960,289	-		DZA65_RS09290	0.74	-0.1
1,960,289	-		DZA65_RS09290	0.74	+0.1
1,960,289	-		DZA65_RS09290	0.74	+0.0
1,960,289	-		DZA65_RS09290	0.74	-0.4
1,960,315	+				+1.7
1,960,315	+		DZA65_RS09290	0.77	-0.6
1,960,315	+		DZA65_RS09290	0.77	-0.3
1,960,315	+		DZA65_RS09290	0.77	+0.3
1,960,316	-		DZA65_RS09290	0.77	+0.3
1,960,316	-		DZA65_RS09290	0.77	-0.5
1,960,316	-		DZA65_RS09290	0.77	+0.4
1,960,316	-		DZA65_RS09290	0.77	+0.0
1,960,316	-		DZA65_RS09290	0.77	-0.5
1,960,316	-		DZA65_RS09290	0.77	-0.8
1,960,316	-		DZA65_RS09290	0.77	+0.2
1,960,316	-		DZA65_RS09290	0.77	-1.6