Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08545

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,802,397	+				-1.0
1,802,425	+				-0.5
1,802,426	-				+0.1
1,802,431	+				-1.2
1,802,455	+				+0.2
1,802,456	-				-0.2
1,802,456	-				-0.4
1,802,475	-				-0.1
1,802,475	-				-0.6
1,802,556	+				-0.6
1,802,557	-				+0.2
1,802,567	+				-0.2
1,802,702	+				-1.4
1,802,713	+				-1.6
1,802,713	+				-0.6
1,802,714	-				-0.8
1,802,714	-				-0.7
1,802,718	+				-0.2
1,802,718	+				-0.6
1,802,718	+				-0.7
1,802,719	-				-1.2
1,802,807	+				-0.6
1,802,808	-				-1.6
1,802,816	-				-0.2
1,802,823	+				+0.2
1,802,868	+				+0.4
1,802,868	+				-0.2
1,802,868	+				+0.9
1,802,868	+				-0.6
1,802,868	+				-2.8
1,802,868	+				-2.7
1,802,869	-				+0.1
1,802,871	+				-1.6
1,802,872	-				+1.1
1,802,872	-				+0.1
1,802,877	+		DZA65_RS08540	0.11	-0.1
1,802,877	+		DZA65_RS08540	0.11	+0.2
1,802,877	+		DZA65_RS08540	0.11	-1.6
1,802,878	-		DZA65_RS08540	0.11	-0.4
1,802,881	+		DZA65_RS08540	0.11	+0.8
1,802,881	+		DZA65_RS08540	0.11	-0.8
1,802,881	+				-0.2
1,802,882	-		DZA65_RS08540	0.12	+0.3
1,802,950	-		DZA65_RS08540	0.25	+0.2
1,803,066	+		DZA65_RS08540	0.48	+0.0
1,803,066	+				+0.0
1,803,228	+		DZA65_RS08540	0.80	-1.4
1,803,228	+				-0.2
1,803,228	+		DZA65_RS08540	0.80	-1.1
1,803,228	+		DZA65_RS08540	0.80	+0.2
1,803,229	-		DZA65_RS08540	0.80	-0.5
1,803,229	-		DZA65_RS08540	0.80	+0.8
1,803,325	+				-0.5
1,803,325	+				-0.2
1,803,325	+				-1.6
1,803,325	+				-0.2
1,803,326	-				-0.4
1,803,326	-				-1.0
1,803,326	-				-0.5
1,803,337	-				-1.3
1,803,337	-				-0.2
1,803,464	+				-0.7
1,803,464	+				+0.1
1,803,464	+				+0.3
1,803,464	+				+0.5
1,803,465	-				-0.9
1,803,465	-				-0.1
1,803,465	-				-0.3
1,803,465	-				+0.8
1,803,465	-				-0.2
1,803,465	-				-1.0
1,803,466	+				-0.2
1,803,466	+				-0.6
1,803,466	+				-0.8
1,803,466	+				-0.8
1,803,466	+				-0.5
1,803,466	+				+0.2
1,803,466	+				+0.2
1,803,467	-				-1.1
1,803,467	-				-2.4
1,803,467	-				-0.3
1,803,467	-				-0.5
1,803,467	-				+0.2
1,803,703	-		DZA65_RS08545	0.23	-0.4
1,803,776	+		DZA65_RS08545	0.28	-2.2
1,803,776	+		DZA65_RS08545	0.28	-0.4
1,803,777	-		DZA65_RS08545	0.28	+0.0
1,803,788	+		DZA65_RS08545	0.29	-0.2
1,803,788	+		DZA65_RS08545	0.29	-0.2
1,803,789	-		DZA65_RS08545	0.29	+0.2
1,803,887	+		DZA65_RS08545	0.36	+0.2
1,803,887	+		DZA65_RS08545	0.36	+0.8
1,803,887	+		DZA65_RS08545	0.36	-0.9
1,803,887	+		DZA65_RS08545	0.36	+0.8
1,803,887	+		DZA65_RS08545	0.36	-0.4
1,803,887	+		DZA65_RS08545	0.36	-0.4
1,803,887	+		DZA65_RS08545	0.36	-0.2
1,803,887	+		DZA65_RS08545	0.36	+0.2
1,803,887	+		DZA65_RS08545	0.36	+0.5
1,803,887	+		DZA65_RS08545	0.36	+0.4
1,803,887	+		DZA65_RS08545	0.36	-0.0
1,803,887	+		DZA65_RS08545	0.36	-2.8
1,803,888	-		DZA65_RS08545	0.36	+0.2
1,803,888	-		DZA65_RS08545	0.36	+0.8
1,803,888	-		DZA65_RS08545	0.36	-1.8
1,803,888	-		DZA65_RS08545	0.36	+0.0
1,803,925	+		DZA65_RS08545	0.38	-0.2
1,804,019	+		DZA65_RS08545	0.45	-0.8
1,804,061	+		DZA65_RS08545	0.47	-0.4
1,804,103	+		DZA65_RS08545	0.50	-0.4
1,804,103	+		DZA65_RS08545	0.50	-0.2
1,804,104	-		DZA65_RS08545	0.50	-0.8
1,804,139	+		DZA65_RS08545	0.53	+1.4
1,804,140	-		DZA65_RS08545	0.53	+0.4
1,804,140	-		DZA65_RS08545	0.53	+0.2
1,804,172	+		DZA65_RS08545	0.55	-0.6
1,804,172	+		DZA65_RS08545	0.55	-0.1
1,804,172	+		DZA65_RS08545	0.55	-0.8
1,804,172	+		DZA65_RS08545	0.55	-0.1
1,804,172	+		DZA65_RS08545	0.55	+0.6
1,804,172	+		DZA65_RS08545	0.55	-0.2
1,804,172	+		DZA65_RS08545	0.55	-0.6
1,804,172	+		DZA65_RS08545	0.55	+1.2
1,804,172	+		DZA65_RS08545	0.55	-2.2
1,804,173	-		DZA65_RS08545	0.55	+0.4
1,804,173	-		DZA65_RS08545	0.55	-0.1
1,804,173	-		DZA65_RS08545	0.55	+0.2
1,804,173	-		DZA65_RS08545	0.55	-1.2
1,804,173	-		DZA65_RS08545	0.55	+0.4
1,804,173	-		DZA65_RS08545	0.55	+0.1
1,804,173	-		DZA65_RS08545	0.55	-1.6
1,804,173	-		DZA65_RS08545	0.55	+0.8
1,804,173	-		DZA65_RS08545	0.55	+0.6
1,804,173	-		DZA65_RS08545	0.55	+1.1
1,804,232	+		DZA65_RS08545	0.59	+0.2
1,804,232	+		DZA65_RS08545	0.59	-2.1
1,804,301	+		DZA65_RS08545	0.64	+0.3
1,804,301	+		DZA65_RS08545	0.64	+0.9
1,804,302	-		DZA65_RS08545	0.64	-1.1
1,804,302	-		DZA65_RS08545	0.64	+0.3
1,804,302	-		DZA65_RS08545	0.64	+0.5
1,804,302	-		DZA65_RS08545	0.64	+1.5
1,804,302	-		DZA65_RS08545	0.64	-1.2
1,804,302	-		DZA65_RS08545	0.64	+1.2
1,804,351	+		DZA65_RS08545	0.67	-0.1
1,804,402	+		DZA65_RS08545	0.71	-0.0
1,804,403	-		DZA65_RS08545	0.71	-1.3
1,804,403	-		DZA65_RS08545	0.71	+0.3
1,804,403	-		DZA65_RS08545	0.71	+0.3
1,804,459	+		DZA65_RS08545	0.74	+0.1
1,804,460	-		DZA65_RS08545	0.74	-0.7
1,804,460	-		DZA65_RS08545	0.74	-0.2
1,804,460	-		DZA65_RS08545	0.74	+0.3
1,804,464	+		DZA65_RS08545	0.75	+0.3
1,804,464	+		DZA65_RS08545	0.75	-0.5
1,804,464	+		DZA65_RS08545	0.75	-0.0
1,804,486	+		DZA65_RS08545	0.76	+0.4
1,804,486	+		DZA65_RS08545	0.76	-0.6
1,804,487	-		DZA65_RS08545	0.76	-0.7
1,804,505	+		DZA65_RS08545	0.77	+0.8
1,804,505	+		DZA65_RS08545	0.77	-0.2
1,804,505	+		DZA65_RS08545	0.77	-1.5
1,804,505	+		DZA65_RS08545	0.77	-0.2
1,804,506	-		DZA65_RS08545	0.78	-0.5
1,804,529	+		DZA65_RS08545	0.79	+1.4
1,804,529	+		DZA65_RS08545	0.79	+0.5
1,804,529	+		DZA65_RS08545	0.79	+0.2
1,804,529	+		DZA65_RS08545	0.79	+0.8
1,804,529	+		DZA65_RS08545	0.79	-1.2
1,804,529	+		DZA65_RS08545	0.79	+1.0
1,804,530	-		DZA65_RS08545	0.79	-2.1
1,804,530	-		DZA65_RS08545	0.79	+0.5
1,804,530	-		DZA65_RS08545	0.79	+0.3
1,804,530	-		DZA65_RS08545	0.79	-0.2
1,804,559	+		DZA65_RS08545	0.81	-0.8
1,804,559	+		DZA65_RS08545	0.81	-0.4
1,804,559	+		DZA65_RS08545	0.81	+1.3
1,804,559	+		DZA65_RS08545	0.81	-0.8
1,804,560	-		DZA65_RS08545	0.81	+0.8
1,804,560	-		DZA65_RS08545	0.81	+0.3
1,804,630	+		DZA65_RS08545	0.86	-0.2
1,804,630	+		DZA65_RS08545	0.86	+0.4
1,804,631	-		DZA65_RS08545	0.86	+0.1
1,804,631	-		DZA65_RS08545	0.86	-0.6
1,804,631	-		DZA65_RS08545	0.86	+0.4
1,804,631	-		DZA65_RS08545	0.86	-1.8
1,804,646	+		DZA65_RS08545	0.87	+2.5
1,804,646	+		DZA65_RS08545	0.87	-1.5
1,804,647	-				+0.8
1,804,680	+		DZA65_RS08545	0.89	-1.8
1,804,680	+		DZA65_RS08545	0.89	-0.5
1,804,680	+		DZA65_RS08545	0.89	+0.4
1,804,681	-		DZA65_RS08545	0.89	-1.6
1,804,681	-		DZA65_RS08545	0.89	-1.1
1,804,681	-		DZA65_RS08545	0.89	-0.3
1,804,681	-		DZA65_RS08545	0.89	-1.6
1,804,748	+				+0.3
1,804,784	+				+1.3
1,804,784	+				+1.5
1,804,784	+				+0.0
1,804,784	+				+0.8
1,804,784	+				-0.2
1,804,784	+				+0.5
1,804,784	+				+0.8
1,804,784	+				-0.7
1,804,785	-				-0.8
1,804,785	-				-1.1
1,804,785	-				+1.2
1,804,785	-				-1.4
1,804,835	+				-0.6
1,804,980	+		DZA65_RS08550	0.31	-0.1
1,804,981	-		DZA65_RS08550	0.32	-0.6
1,804,987	+		DZA65_RS08550	0.33	+0.6
1,805,038	+		DZA65_RS08550	0.45	-0.1
1,805,038	+				-0.8
1,805,039	-		DZA65_RS08550	0.45	-0.2
1,805,039	-		DZA65_RS08550	0.45	-0.5
1,805,048	-		DZA65_RS08550	0.47	-1.0
1,805,101	+		DZA65_RS08550	0.59	+0.3
1,805,101	+		DZA65_RS08550	0.59	-0.2
1,805,101	+		DZA65_RS08550	0.59	+0.3
1,805,101	+		DZA65_RS08550	0.59	-1.4
1,805,101	+		DZA65_RS08550	0.59	-0.5
1,805,101	+		DZA65_RS08550	0.59	-0.6
1,805,101	+		DZA65_RS08550	0.59	-1.1
1,805,101	+		DZA65_RS08550	0.59	-0.1
1,805,101	+		DZA65_RS08550	0.59	-1.1
1,805,101	+		DZA65_RS08550	0.59	+0.6
1,805,101	+		DZA65_RS08550	0.59	-1.0
1,805,102	-		DZA65_RS08550	0.60	-0.6
1,805,102	-		DZA65_RS08550	0.60	+0.4
1,805,102	-		DZA65_RS08550	0.60	+0.3
1,805,102	-		DZA65_RS08550	0.60	+0.0
1,805,102	-		DZA65_RS08550	0.60	+0.2
1,805,102	-		DZA65_RS08550	0.60	-2.1
1,805,102	-		DZA65_RS08550	0.60	-0.2
1,805,102	-		DZA65_RS08550	0.60	-2.2
1,805,102	-		DZA65_RS08550	0.60	-0.1
1,805,102	-		DZA65_RS08550	0.60	+0.3
1,805,102	-		DZA65_RS08550	0.60	-2.6
1,805,102	-		DZA65_RS08550	0.60	+0.3
1,805,153	+		DZA65_RS08550	0.72	+0.2
1,805,237	-				-0.4
1,805,237	-				+0.2
1,805,242	+				+0.5
1,805,243	-				-1.2
1,805,261	+				+0.0
1,805,277	+				+0.1
1,805,277	+				-0.6
1,805,277	+				+0.8
1,805,277	+				+0.2
1,805,277	+				-0.8
1,805,277	+				-0.7
1,805,277	+				+0.8
1,805,278	-				+0.3
1,805,278	-				+0.1
1,805,278	-				-0.5
1,805,278	-				+0.3
1,805,278	-				-1.2
1,805,278	-				-0.2
1,805,278	-				+1.3
1,805,278	-				-0.6
1,805,314	+				+1.2
1,805,314	+				-0.8
1,805,314	+				+0.4
1,805,314	+				+1.8
1,805,315	-				-0.3
1,805,315	-				-1.8
1,805,493	+		DZA65_RS08555	0.12	-0.4
1,805,494	-		DZA65_RS08555	0.12	+0.1
1,805,509	+		DZA65_RS08555	0.13	+1.2
1,805,509	+		DZA65_RS08555	0.13	-0.4
1,805,509	+		DZA65_RS08555	0.13	-0.1
1,805,509	+		DZA65_RS08555	0.13	-0.2
1,805,510	-		DZA65_RS08555	0.13	-1.6
1,805,510	-		DZA65_RS08555	0.13	-0.3
1,805,510	-		DZA65_RS08555	0.13	-1.7
1,805,665	+		DZA65_RS08555	0.22	-1.1
1,805,665	+		DZA65_RS08555	0.22	+0.3
1,805,666	-		DZA65_RS08555	0.22	+0.3
1,805,806	+		DZA65_RS08555	0.30	+1.3
1,805,806	+		DZA65_RS08555	0.30	+1.0
1,805,807	-		DZA65_RS08555	0.30	-1.6
1,805,807	-		DZA65_RS08555	0.30	+1.4
1,805,807	-		DZA65_RS08555	0.30	-1.2
1,805,808	+		DZA65_RS08555	0.30	-1.1
1,805,809	-		DZA65_RS08555	0.30	+0.2
1,805,816	-		DZA65_RS08555	0.30	-0.7
1,805,824	+		DZA65_RS08555	0.31	-0.2