Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08315

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,751,779	-		DZA65_RS08310	0.22	-0.9
1,752,000	+		DZA65_RS08310	0.50	-1.6
1,752,001	-		DZA65_RS08310	0.51	-2.0
1,752,001	-		DZA65_RS08310	0.51	-0.2
1,752,001	-		DZA65_RS08310	0.51	-1.4
1,752,001	-		DZA65_RS08310	0.51	-0.7
1,752,001	-		DZA65_RS08310	0.51	+0.6
1,752,039	-		DZA65_RS08310	0.55	-0.8
1,752,225	+		DZA65_RS08310	0.79	-1.6
1,752,245	+		DZA65_RS08310	0.82	-0.1
1,752,245	+		DZA65_RS08310	0.82	-0.5
1,752,245	+		DZA65_RS08310	0.82	-0.2
1,752,245	+		DZA65_RS08310	0.82	+0.7
1,752,245	+		DZA65_RS08310	0.82	+0.2
1,752,245	+		DZA65_RS08310	0.82	-0.2
1,752,245	+		DZA65_RS08310	0.82	-0.9
1,752,245	+		DZA65_RS08310	0.82	-0.0
1,752,245	+		DZA65_RS08310	0.82	-0.1
1,752,245	+		DZA65_RS08310	0.82	-0.9
1,752,246	-		DZA65_RS08310	0.82	-2.6
1,752,246	-		DZA65_RS08310	0.82	+0.5
1,752,246	-		DZA65_RS08310	0.82	+0.0
1,752,246	-		DZA65_RS08310	0.82	-1.8
1,752,246	-		DZA65_RS08310	0.82	+0.3
1,752,246	-				-0.6
1,752,246	-		DZA65_RS08310	0.82	-0.2
1,752,246	-		DZA65_RS08310	0.82	-0.5
1,752,246	-		DZA65_RS08310	0.82	-1.0
1,752,246	-		DZA65_RS08310	0.82	-0.6
1,752,246	-		DZA65_RS08310	0.82	-1.2
1,752,246	-		DZA65_RS08310	0.82	-1.0
1,752,246	-		DZA65_RS08310	0.82	-1.4
1,752,246	-		DZA65_RS08310	0.82	-0.4
1,752,246	-		DZA65_RS08310	0.82	-0.6
1,752,248	+		DZA65_RS08310	0.82	+0.1
1,752,248	+		DZA65_RS08310	0.82	-0.2
1,752,248	+		DZA65_RS08310	0.82	+1.6
1,752,249	-		DZA65_RS08310	0.82	+0.0
1,752,249	-				+2.1
1,752,249	-		DZA65_RS08310	0.82	-0.2
1,752,249	-		DZA65_RS08310	0.82	-1.2
1,752,275	+		DZA65_RS08310	0.86	-2.8
1,752,275	+		DZA65_RS08310	0.86	-0.8
1,752,275	+		DZA65_RS08310	0.86	-0.4
1,752,275	+		DZA65_RS08310	0.86	-0.5
1,752,276	-		DZA65_RS08310	0.86	+0.2
1,752,276	-		DZA65_RS08310	0.86	+0.4
1,752,276	-		DZA65_RS08310	0.86	-0.0
1,752,276	-		DZA65_RS08310	0.86	-0.6
1,752,360	+				-2.6
1,752,384	+				+0.8
1,752,385	-				-1.1
1,752,385	-				-0.4
1,752,390	+				+0.0
1,752,390	+				+0.4
1,752,390	+				-0.7
1,752,391	-				-0.1
1,752,391	-				+0.1
1,752,471	+				-0.3
1,752,472	-				-0.4
1,752,489	+				-0.5
1,752,489	+				+1.3
1,752,490	-				+1.2
1,752,490	-				-0.7
1,752,490	-				+0.2
1,752,492	+				-1.4
1,752,492	+				+0.4
1,752,492	+				-0.4
1,752,492	+				-0.4
1,752,492	+				+0.0
1,752,492	+				+0.3
1,752,492	+				-0.0
1,752,492	+				-0.9
1,752,493	-				-0.2
1,752,493	-				-1.6
1,752,493	-				-0.6
1,752,493	-				+0.7
1,752,493	-				-0.3
1,752,493	-				-0.2
1,752,493	-				-0.8
1,752,493	-				-0.7
1,752,493	-				+0.3
1,752,493	-				-0.4
1,752,493	-				-0.5
1,752,493	-				+0.5
1,752,575	+				-0.1
1,752,575	+				-0.4
1,752,575	+				+0.0
1,752,575	+				+0.3
1,752,576	-				+0.2
1,752,576	-				+0.1
1,752,576	-				+0.2
1,752,576	-				-0.6
1,752,576	-				-1.0
1,752,576	-				-1.0
1,752,593	+				-0.5
1,752,593	+				-0.2
1,752,594	-				+0.5
1,752,594	-				+0.1
1,752,594	-				-1.8
1,752,598	+				+0.1
1,752,598	+				-0.9
1,752,598	+				-1.7
1,752,598	+				+0.0
1,752,599	-				+0.8
1,752,599	-				-0.4
1,752,621	+				-0.7
1,752,621	+				-0.2
1,752,621	+				-0.4
1,752,621	+				-0.4
1,752,624	+				-1.2
1,752,624	+				+0.3
1,752,682	-				-0.5
1,752,774	+				-0.5
1,752,774	+				-0.4
1,752,775	-				-0.5
1,752,822	+				-0.2
1,752,914	+		DZA65_RS08315	0.15	-0.1
1,752,915	-		DZA65_RS08315	0.15	-2.4
1,753,043	+		DZA65_RS08315	0.27	-0.7
1,753,043	+		DZA65_RS08315	0.27	+0.6
1,753,044	-		DZA65_RS08315	0.27	+0.8
1,753,066	+		DZA65_RS08315	0.29	-1.8
1,753,067	-		DZA65_RS08315	0.29	+0.8
1,753,067	-		DZA65_RS08315	0.29	-0.2
1,753,161	+		DZA65_RS08315	0.38	+0.2
1,753,240	+		DZA65_RS08315	0.45	-0.4
1,753,240	+		DZA65_RS08315	0.45	+0.2
1,753,240	+		DZA65_RS08315	0.45	+0.8
1,753,255	-		DZA65_RS08315	0.46	+0.5
1,753,333	+		DZA65_RS08315	0.54	-0.2
1,753,334	-		DZA65_RS08315	0.54	-1.9
1,753,334	-		DZA65_RS08315	0.54	+1.8
1,753,334	-		DZA65_RS08315	0.54	+0.9
1,753,548	-		DZA65_RS08315	0.74	+0.4
1,753,563	+		DZA65_RS08315	0.75	-0.1
1,753,739	+				+0.0
1,753,739	+				+0.2
1,753,739	+				+0.1
1,753,740	-				+0.5
1,753,740	-				-0.8
1,753,787	+				-0.6
1,753,788	-				+0.5
1,754,103	+		DZA65_RS08320	0.28	-0.3
1,754,103	+		DZA65_RS08320	0.28	-1.4
1,754,103	+		DZA65_RS08320	0.28	+0.4
1,754,104	-		DZA65_RS08320	0.28	-0.5
1,754,104	-		DZA65_RS08320	0.28	-1.2
1,754,104	-		DZA65_RS08320	0.28	-1.8
1,754,104	-		DZA65_RS08320	0.28	-0.4
1,754,104	-		DZA65_RS08320	0.28	-0.8
1,754,121	+		DZA65_RS08320	0.30	+0.6
1,754,122	-		DZA65_RS08320	0.31	-0.6
1,754,122	-		DZA65_RS08320	0.31	-1.4
1,754,200	-		DZA65_RS08320	0.40	-0.7
1,754,211	+		DZA65_RS08320	0.42	-1.1
1,754,211	+		DZA65_RS08320	0.42	-0.4
1,754,211	+		DZA65_RS08320	0.42	+0.1
1,754,211	+		DZA65_RS08320	0.42	+1.5
1,754,211	+		DZA65_RS08320	0.42	-0.6
1,754,211	+		DZA65_RS08320	0.42	+0.8
1,754,211	+		DZA65_RS08320	0.42	-0.7
1,754,212	-		DZA65_RS08320	0.42	-2.0
1,754,212	-		DZA65_RS08320	0.42	+1.0
1,754,212	-		DZA65_RS08320	0.42	+0.3
1,754,212	-		DZA65_RS08320	0.42	-0.8
1,754,290	-		DZA65_RS08320	0.51	-0.4
1,754,331	+		DZA65_RS08320	0.57	+0.1
1,754,331	+		DZA65_RS08320	0.57	+0.8
1,754,333	+		DZA65_RS08320	0.57	+3.1
1,754,333	+		DZA65_RS08320	0.57	-0.7
1,754,333	+		DZA65_RS08320	0.57	+0.3
1,754,334	-		DZA65_RS08320	0.57	-0.2
1,754,469	+		DZA65_RS08320	0.74	+0.9
1,754,647	-				-0.1
1,754,647	-				-0.7
1,754,648	+				-1.0
1,754,648	+				-1.6
1,754,648	+				-0.5
1,754,648	+				-0.0
1,754,778	+		DZA65_RS08325	0.12	+0.6
1,754,778	+		DZA65_RS08325	0.12	-0.8
1,754,778	+		DZA65_RS08325	0.12	-0.2