Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08235

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,729,991	+				+0.5
1,729,991	+				-0.1
1,729,992	-				-0.1
1,729,992	-				+1.6
1,730,097	-		DZA65_RS08230	0.16	-3.0
1,730,109	+		DZA65_RS08230	0.17	+0.3
1,730,110	-		DZA65_RS08230	0.17	-0.8
1,730,110	-		DZA65_RS08230	0.17	-0.3
1,730,110	-		DZA65_RS08230	0.17	+0.4
1,730,148	-		DZA65_RS08230	0.21	+0.3
1,730,171	+		DZA65_RS08230	0.24	+0.2
1,730,171	+		DZA65_RS08230	0.24	-0.8
1,730,171	+		DZA65_RS08230	0.24	+0.6
1,730,185	+		DZA65_RS08230	0.25	-2.4
1,730,185	+		DZA65_RS08230	0.25	-0.2
1,730,186	-		DZA65_RS08230	0.25	-0.1
1,730,317	-		DZA65_RS08230	0.39	+1.8
1,730,359	-		DZA65_RS08230	0.44	-0.6
1,730,494	+		DZA65_RS08230	0.58	-0.7
1,730,561	+		DZA65_RS08230	0.65	-0.2
1,730,561	+		DZA65_RS08230	0.65	-0.3
1,730,562	-		DZA65_RS08230	0.65	+0.2
1,730,587	+		DZA65_RS08230	0.68	+0.4
1,730,670	+		DZA65_RS08230	0.77	-0.6
1,730,671	-		DZA65_RS08230	0.77	+0.1
1,730,677	+		DZA65_RS08230	0.78	+0.4
1,730,678	-		DZA65_RS08230	0.78	+0.4
1,730,678	-		DZA65_RS08230	0.78	+0.2
1,730,678	-		DZA65_RS08230	0.78	+0.1
1,730,682	+		DZA65_RS08230	0.78	+0.0
1,730,682	+		DZA65_RS08230	0.78	+0.0
1,730,885	+				-2.8
1,730,886	-				-1.4
1,730,888	+				+0.4
1,730,888	+				+0.5
1,730,889	-				-0.5
1,730,889	-				+0.2
1,730,889	-				-0.9
1,730,898	-				-0.5
1,730,898	-				-0.1
1,730,943	+				-1.8
1,730,943	+				-0.4
1,730,943	+				+0.8
1,730,943	+				-0.8
1,730,944	-				-0.3
1,730,959	+				-0.5
1,730,974	+				-0.8
1,730,974	+				+0.0
1,730,974	+				-0.0
1,730,974	+				-0.6
1,730,975	-				-0.8
1,730,975	-				+0.6
1,730,975	-				+1.2
1,730,999	+				-0.5
1,731,000	-				+0.2
1,731,005	+				-1.1
1,731,024	+				-0.5
1,731,024	+				-2.2
1,731,025	-				-1.3
1,731,025	-				-0.6
1,731,025	-				-0.8
1,731,025	-				-1.0
1,731,025	-				-1.6
1,731,025	-				-2.0
1,731,027	+				+0.0
1,731,027	+				-0.5
1,731,028	-				+0.5
1,731,038	+		DZA65_RS08235	0.10	-0.5
1,731,038	+		DZA65_RS08235	0.10	-0.2
1,731,044	+		DZA65_RS08235	0.11	-1.5
1,731,044	+		DZA65_RS08235	0.11	-0.6
1,731,045	-		DZA65_RS08235	0.12	+0.8
1,731,045	-		DZA65_RS08235	0.12	+0.5
1,731,045	-		DZA65_RS08235	0.12	+0.0
1,731,045	-		DZA65_RS08235	0.12	-0.5
1,731,065	+		DZA65_RS08235	0.15	+0.1
1,731,065	+		DZA65_RS08235	0.15	-0.0
1,731,065	+		DZA65_RS08235	0.15	-1.2
1,731,065	+		DZA65_RS08235	0.15	-1.0
1,731,066	-		DZA65_RS08235	0.15	-1.4
1,731,066	-		DZA65_RS08235	0.15	-0.6
1,731,066	-		DZA65_RS08235	0.15	-0.5
1,731,068	+		DZA65_RS08235	0.15	-1.2
1,731,068	+		DZA65_RS08235	0.15	+1.0
1,731,068	+		DZA65_RS08235	0.15	-0.2
1,731,069	-		DZA65_RS08235	0.15	-1.8
1,731,069	-		DZA65_RS08235	0.15	-0.0
1,731,069	-		DZA65_RS08235	0.15	-2.2
1,731,075	+		DZA65_RS08235	0.16	-1.2
1,731,076	-		DZA65_RS08235	0.17	-2.0
1,731,168	+		DZA65_RS08235	0.31	-0.6
1,731,168	+		DZA65_RS08235	0.31	+0.1
1,731,168	+		DZA65_RS08235	0.31	-0.6
1,731,169	-		DZA65_RS08235	0.31	-2.9
1,731,173	+		DZA65_RS08235	0.32	-1.1
1,731,173	+		DZA65_RS08235	0.32	-2.0
1,731,173	+		DZA65_RS08235	0.32	-1.0
1,731,173	+		DZA65_RS08235	0.32	-1.0
1,731,174	-		DZA65_RS08235	0.32	-0.5
1,731,174	-		DZA65_RS08235	0.32	+0.2
1,731,174	-		DZA65_RS08235	0.32	-2.4
1,731,174	-		DZA65_RS08235	0.32	-0.1
1,731,177	+		DZA65_RS08235	0.33	+0.0
1,731,177	+		DZA65_RS08235	0.33	-1.0
1,731,178	-		DZA65_RS08235	0.33	-0.8
1,731,178	-		DZA65_RS08235	0.33	-1.6
1,731,211	+		DZA65_RS08235	0.38	+0.2
1,731,340	+		DZA65_RS08235	0.59	+0.8
1,731,341	-		DZA65_RS08235	0.59	+0.3
1,731,350	+		DZA65_RS08235	0.60	-2.0
1,731,439	+		DZA65_RS08235	0.75	-1.1
1,731,445	+		DZA65_RS08235	0.76	-0.0
1,731,445	+		DZA65_RS08235	0.76	-0.8
1,731,445	+		DZA65_RS08235	0.76	-0.8
1,731,445	+		DZA65_RS08235	0.76	-0.9
1,731,446	-		DZA65_RS08235	0.76	-1.6
1,731,446	-		DZA65_RS08235	0.76	-0.2
1,731,446	-		DZA65_RS08235	0.76	-0.2
1,731,458	+		DZA65_RS08235	0.78	+0.8
1,731,458	+		DZA65_RS08235	0.78	-0.6
1,731,459	-		DZA65_RS08235	0.78	+0.3
1,731,459	-		DZA65_RS08235	0.78	-0.2
1,731,470	+		DZA65_RS08235	0.80	-2.7
1,731,471	-		DZA65_RS08235	0.80	+1.2
1,731,505	+		DZA65_RS08235	0.85	+0.2
1,731,592	-				-0.2
1,731,598	+				+0.8
1,731,604	+				-0.1
1,731,604	+				-1.2
1,731,670	-				+0.5
1,731,735	-				-0.1
1,731,745	-				-0.7
1,731,752	+				-0.4
1,731,765	-				-0.3
1,731,784	+				-0.6
1,731,784	+				-0.1
1,731,784	+				-0.1
1,731,784	+				+1.5
1,731,784	+				-1.3
1,731,784	+				+0.5
1,731,785	-				-0.7
1,731,785	-				+1.8
1,731,785	-				+0.5
1,731,785	-				+0.9
1,731,785	-				+0.3
1,731,785	-				-0.4
1,731,785	-				-0.0
1,731,798	+				+0.4
1,731,853	+				-0.0
1,731,928	+				+1.0
1,731,929	-		DZA65_RS08240	0.10	-0.5
1,731,929	-		DZA65_RS08240	0.10	+0.3
1,731,967	+		DZA65_RS08240	0.14	-1.2
1,732,028	+		DZA65_RS08240	0.19	-0.6
1,732,162	+				-0.2
1,732,162	+		DZA65_RS08240	0.32	+0.1
1,732,172	+		DZA65_RS08240	0.33	-0.6
1,732,172	+		DZA65_RS08240	0.33	+0.6
1,732,172	+		DZA65_RS08240	0.33	-0.9
1,732,172	+		DZA65_RS08240	0.33	-0.8
1,732,173	-		DZA65_RS08240	0.33	-0.7
1,732,249	+		DZA65_RS08240	0.40	-0.1
1,732,249	+		DZA65_RS08240	0.40	+0.2
1,732,249	+		DZA65_RS08240	0.40	-2.5
1,732,249	+		DZA65_RS08240	0.40	-1.6
1,732,250	-		DZA65_RS08240	0.40	+0.9
1,732,250	-		DZA65_RS08240	0.40	-0.3
1,732,250	-		DZA65_RS08240	0.40	-0.3
1,732,295	+		DZA65_RS08240	0.44	+0.3
1,732,317	+		DZA65_RS08240	0.46	-1.6
1,732,317	+		DZA65_RS08240	0.46	-0.3
1,732,317	+		DZA65_RS08240	0.46	+1.9
1,732,317	+		DZA65_RS08240	0.46	-0.5
1,732,317	+		DZA65_RS08240	0.46	-0.2
1,732,318	-		DZA65_RS08240	0.46	-0.0
1,732,318	-		DZA65_RS08240	0.46	-0.1
1,732,318	-		DZA65_RS08240	0.46	-0.7
1,732,318	-		DZA65_RS08240	0.46	-0.9
1,732,318	-		DZA65_RS08240	0.46	+0.1
1,732,318	-		DZA65_RS08240	0.46	+0.8
1,732,318	-		DZA65_RS08240	0.46	-0.2
1,732,318	-		DZA65_RS08240	0.46	-0.7
1,732,320	-		DZA65_RS08240	0.46	+0.9
1,732,438	+				-1.2
1,732,438	+		DZA65_RS08240	0.58	-1.0
1,732,439	-		DZA65_RS08240	0.58	-0.4
1,732,439	-		DZA65_RS08240	0.58	+1.2
1,732,448	-		DZA65_RS08240	0.58	-0.1
1,732,462	+		DZA65_RS08240	0.60	-0.0
1,732,462	+		DZA65_RS08240	0.60	+1.0
1,732,463	-		DZA65_RS08240	0.60	+0.9