Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06065

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,253,469	+		DZA65_RS06060	0.64	+0.2
1,253,469	+		DZA65_RS06060	0.64	-0.2
1,253,469	+		DZA65_RS06060	0.64	+0.1
1,253,495	-		DZA65_RS06060	0.65	+1.2
1,253,497	+		DZA65_RS06060	0.65	-0.8
1,253,497	+		DZA65_RS06060	0.65	+0.4
1,253,497	+		DZA65_RS06060	0.65	+1.0
1,253,497	+		DZA65_RS06060	0.65	-0.7
1,253,497	+		DZA65_RS06060	0.65	-2.6
1,253,497	+		DZA65_RS06060	0.65	-0.6
1,253,497	+		DZA65_RS06060	0.65	+0.3
1,253,497	+		DZA65_RS06060	0.65	-0.6
1,253,497	+		DZA65_RS06060	0.65	-0.6
1,253,497	+		DZA65_RS06060	0.65	+0.3
1,253,497	+		DZA65_RS06060	0.65	-0.7
1,253,497	+		DZA65_RS06060	0.65	-0.7
1,253,497	+		DZA65_RS06060	0.65	+0.6
1,253,497	+		DZA65_RS06060	0.65	+1.0
1,253,497	+		DZA65_RS06060	0.65	-1.2
1,253,497	+		DZA65_RS06060	0.65	+0.6
1,253,497	+		DZA65_RS06060	0.65	-0.1
1,253,497	+		DZA65_RS06060	0.65	-1.6
1,253,497	+		DZA65_RS06060	0.65	-0.2
1,253,498	-		DZA65_RS06060	0.65	-0.0
1,253,498	-		DZA65_RS06060	0.65	-2.6
1,253,498	-		DZA65_RS06060	0.65	-2.5
1,253,498	-		DZA65_RS06060	0.65	-0.7
1,253,498	-		DZA65_RS06060	0.65	-0.4
1,253,498	-		DZA65_RS06060	0.65	-0.0
1,253,498	-		DZA65_RS06060	0.65	-0.0
1,253,498	-		DZA65_RS06060	0.65	-0.3
1,253,498	-		DZA65_RS06060	0.65	-1.8
1,253,498	-		DZA65_RS06060	0.65	+0.6
1,253,498	-		DZA65_RS06060	0.65	-1.2
1,253,498	-		DZA65_RS06060	0.65	+0.5
1,253,498	-		DZA65_RS06060	0.65	-0.0
1,253,498	-		DZA65_RS06060	0.65	+0.2
1,253,498	-		DZA65_RS06060	0.65	+0.5
1,253,498	-		DZA65_RS06060	0.65	+0.1
1,253,498	-		DZA65_RS06060	0.65	+0.3
1,253,498	-		DZA65_RS06060	0.65	-1.6
1,253,498	-		DZA65_RS06060	0.65	-1.7
1,253,576	+		DZA65_RS06060	0.70	+0.6
1,253,576	+		DZA65_RS06060	0.70	+0.5
1,253,576	+		DZA65_RS06060	0.70	+0.0
1,253,576	+		DZA65_RS06060	0.70	-0.8
1,253,576	+		DZA65_RS06060	0.70	+1.0
1,253,576	+		DZA65_RS06060	0.70	-1.0
1,253,576	+		DZA65_RS06060	0.70	+0.8
1,253,576	+		DZA65_RS06060	0.70	-0.1
1,253,576	+		DZA65_RS06060	0.70	+0.2
1,253,576	+		DZA65_RS06060	0.70	-0.6
1,253,576	+		DZA65_RS06060	0.70	-2.3
1,253,576	+		DZA65_RS06060	0.70	+0.2
1,253,576	+		DZA65_RS06060	0.70	-2.4
1,253,576	+		DZA65_RS06060	0.70	-1.3
1,253,576	+		DZA65_RS06060	0.70	-0.3
1,253,576	+		DZA65_RS06060	0.70	+0.5
1,253,577	-		DZA65_RS06060	0.70	+1.5
1,253,577	-		DZA65_RS06060	0.70	-0.3
1,253,577	-		DZA65_RS06060	0.70	+0.4
1,253,577	-				+1.0
1,253,577	-		DZA65_RS06060	0.70	-1.1
1,253,577	-		DZA65_RS06060	0.70	+0.1
1,253,577	-				-0.3
1,253,577	-		DZA65_RS06060	0.70	-0.9
1,253,577	-		DZA65_RS06060	0.70	-1.0
1,253,577	-		DZA65_RS06060	0.70	+0.6
1,253,577	-		DZA65_RS06060	0.70	+0.4
1,253,577	-		DZA65_RS06060	0.70	-0.2
1,253,577	-		DZA65_RS06060	0.70	-2.0
1,253,577	-		DZA65_RS06060	0.70	+0.4
1,253,577	-		DZA65_RS06060	0.70	+0.1
1,253,577	-		DZA65_RS06060	0.70	+1.0
1,253,577	-		DZA65_RS06060	0.70	-0.7
1,253,580	+		DZA65_RS06060	0.70	+0.4
1,253,580	+		DZA65_RS06060	0.70	-1.6
1,253,580	+		DZA65_RS06060	0.70	+0.6
1,253,580	+		DZA65_RS06060	0.70	-0.3
1,253,580	+		DZA65_RS06060	0.70	+1.1
1,253,580	+		DZA65_RS06060	0.70	+1.0
1,253,580	+		DZA65_RS06060	0.70	-1.1
1,253,581	-		DZA65_RS06060	0.70	-1.6
1,253,581	-		DZA65_RS06060	0.70	+0.6
1,253,581	-		DZA65_RS06060	0.70	-0.6
1,253,581	-		DZA65_RS06060	0.70	+0.2
1,253,581	-		DZA65_RS06060	0.70	+0.7
1,253,581	-		DZA65_RS06060	0.70	-0.9
1,253,581	-		DZA65_RS06060	0.70	+0.7
1,253,581	-		DZA65_RS06060	0.70	-0.3
1,253,620	+		DZA65_RS06060	0.72	+0.1
1,253,620	+		DZA65_RS06060	0.72	+0.4
1,253,620	+		DZA65_RS06060	0.72	-1.6
1,253,620	+		DZA65_RS06060	0.72	-0.8
1,253,620	+		DZA65_RS06060	0.72	-1.4
1,253,620	+		DZA65_RS06060	0.72	-0.5
1,253,620	+		DZA65_RS06060	0.72	+0.1
1,253,620	+		DZA65_RS06060	0.72	-0.3
1,253,620	+		DZA65_RS06060	0.72	-2.2
1,253,620	+		DZA65_RS06060	0.72	-0.1
1,253,621	-		DZA65_RS06060	0.72	-1.8
1,253,621	-		DZA65_RS06060	0.72	-1.9
1,253,621	-		DZA65_RS06060	0.72	+2.0
1,253,621	-		DZA65_RS06060	0.72	-0.8
1,253,621	-		DZA65_RS06060	0.72	+0.4
1,253,621	-		DZA65_RS06060	0.72	-0.5
1,253,727	+		DZA65_RS06060	0.78	-0.3
1,253,728	-		DZA65_RS06060	0.78	+0.3
1,253,844	+				-1.0
1,253,845	-		DZA65_RS06060	0.85	+0.2
1,253,937	+		DZA65_RS06060	0.90	-1.9
1,253,937	+				+0.4
1,253,937	+		DZA65_RS06060	0.90	-0.2
1,253,937	+		DZA65_RS06060	0.90	+2.0
1,253,937	+		DZA65_RS06060	0.90	-0.1
1,253,937	+		DZA65_RS06060	0.90	+0.7
1,253,937	+		DZA65_RS06060	0.90	+1.2
1,253,938	-		DZA65_RS06060	0.90	-0.3
1,253,938	-		DZA65_RS06060	0.90	-0.6
1,253,938	-		DZA65_RS06060	0.90	+0.3
1,253,938	-		DZA65_RS06060	0.90	-2.2
1,253,938	-		DZA65_RS06060	0.90	-1.0
1,253,955	+				+0.8
1,253,956	-				-1.5
1,253,977	-				-1.7
1,254,028	+				+0.8
1,254,029	-				-1.1
1,254,029	-				-1.0
1,254,029	-				-0.8
1,254,032	-				-2.0
1,254,040	+				-1.3
1,254,040	+				-1.3
1,254,040	+				-1.3
1,254,040	+				-1.1
1,254,041	-				-0.3
1,254,041	-				-0.1
1,254,104	+				-1.6
1,254,150	+				-1.3
1,254,150	+				+1.0
1,254,150	+				+0.7
1,254,150	+				-0.3
1,254,150	+				-1.6
1,254,151	-				-1.6
1,254,151	-				+0.6
1,254,151	-				-0.3
1,254,164	+				-2.2
1,254,164	+				-0.1
1,254,255	+				+0.8
1,254,255	+				-0.5
1,254,255	+				-0.6
1,254,256	-				-0.3
1,254,256	-				-0.4
1,254,256	-				-0.6
1,254,262	+				+0.6
1,254,262	+				-0.5
1,254,262	+				-0.2
1,254,262	+				-0.1
1,254,263	-				-0.3
1,254,263	-				-0.8
1,254,263	-				+0.8
1,254,281	-				-0.5
1,254,281	-				-0.1
1,254,357	+				+2.2
1,254,358	-				-0.1
1,254,358	-				-0.6
1,254,358	-				+0.1
1,254,358	-				-0.6
1,254,358	-				-0.6
1,254,363	+				-0.2
1,254,363	+				-0.5
1,254,363	+				-0.0
1,254,363	+				+1.8
1,254,364	-				-0.4
1,254,394	+				+1.0
1,254,394	+				-0.6
1,254,394	+				+0.2
1,254,395	-				-1.6
1,254,395	-				-0.2
1,254,395	-				+0.3
1,254,395	-				+0.5
1,254,395	-				-1.1
1,254,395	-				-0.6
1,254,398	+				-0.7
1,254,398	+				+0.1
1,254,398	+				+0.2
1,254,398	+				-0.8
1,254,398	+				-0.9
1,254,398	+				-0.2
1,254,398	+				-0.1
1,254,398	+				-1.5
1,254,398	+				-0.9
1,254,398	+				-0.1
1,254,398	+				+0.4
1,254,398	+				+0.4
1,254,398	+				+0.2
1,254,398	+				-0.0
1,254,398	+				+1.3
1,254,398	+				+0.2
1,254,399	-				+0.7
1,254,399	-				-1.2
1,254,399	-				-0.6
1,254,399	-				-0.5
1,254,399	-				-0.7
1,254,399	-				-0.2
1,254,399	-				-0.6
1,254,399	-				+0.2
1,254,399	-				-0.2
1,254,399	-				+0.3
1,254,399	-				+0.6
1,254,399	-				-1.5
1,254,399	-				-0.0
1,254,402	+				-0.2
1,254,403	-				-0.6
1,254,427	-				-0.2
1,254,427	-				-0.0
1,254,434	+				+0.1
1,254,435	-				-1.1
1,254,435	-				+0.2
1,254,435	-				+0.2
1,254,435	-				-0.0
1,254,439	-				+0.4
1,254,462	-		DZA65_RS06065	0.14	+0.1
1,254,462	-		DZA65_RS06065	0.14	-1.5
1,254,462	-		DZA65_RS06065	0.14	-0.2
1,254,462	-		DZA65_RS06065	0.14	+0.7
1,254,462	-		DZA65_RS06065	0.14	-2.1
1,254,462	-		DZA65_RS06065	0.14	-0.2
1,254,550	+		DZA65_RS06065	0.40	+1.0
1,254,550	+		DZA65_RS06065	0.40	-0.8
1,254,550	+		DZA65_RS06065	0.40	-1.7
1,254,550	+		DZA65_RS06065	0.40	-1.4
1,254,551	-		DZA65_RS06065	0.40	-1.0
1,254,565	+		DZA65_RS06065	0.44	-0.6
1,254,565	+		DZA65_RS06065	0.44	-0.8
1,254,574	-		DZA65_RS06065	0.47	-1.0
1,254,648	+		DZA65_RS06065	0.69	-1.1
1,254,658	+		DZA65_RS06065	0.72	-1.0
1,254,659	-		DZA65_RS06065	0.72	+0.3
1,254,667	-		DZA65_RS06065	0.74	-0.0
1,254,749	+				-0.2
1,254,749	+				-1.0
1,254,750	-				-1.0
1,254,750	-				-1.1
1,254,750	-				-1.0
1,254,750	-				-0.2
1,254,752	-				-0.0
1,254,758	+				+1.8
1,254,758	+				+0.3
1,254,758	+				-0.3
1,254,758	+				+0.1
1,254,759	-				+0.5
1,254,768	-				+0.4
1,254,774	-				-0.3
1,254,774	-				-0.6
1,254,776	+				-0.8
1,254,776	+				-0.0
1,254,776	+				+0.7
1,254,776	+				-0.2
1,254,776	+				-0.9
1,254,776	+				-0.7
1,254,776	+				-1.8
1,254,776	+				+1.0
1,254,776	+				-0.6
1,254,776	+				-1.3
1,254,776	+				-0.2
1,254,776	+				+0.1
1,254,776	+				-0.1
1,254,777	-				+0.4
1,254,777	-				+0.8
1,254,777	-				+1.4
1,254,777	-				-1.1
1,254,777	-				-0.1
1,254,780	+				+1.2
1,254,781	-				-0.5
1,254,818	+				-0.4
1,254,819	-				-0.6
1,254,819	-				-0.8
1,254,819	-				-0.8
1,254,824	+				+0.2
1,255,012	-		DZA65_RS06070	0.17	+0.2
1,255,012	-		DZA65_RS06070	0.17	+0.8
1,255,051	+		DZA65_RS06070	0.20	-1.8
1,255,051	+		DZA65_RS06070	0.20	-1.1
1,255,051	+		DZA65_RS06070	0.20	-0.1
1,255,052	-		DZA65_RS06070	0.20	-0.9
1,255,052	-		DZA65_RS06070	0.20	+0.1
1,255,058	-		DZA65_RS06070	0.20	-0.1
1,255,077	-		DZA65_RS06070	0.22	-1.2
1,255,077	-		DZA65_RS06070	0.22	-1.0
1,255,129	-		DZA65_RS06070	0.26	-0.8
1,255,129	-		DZA65_RS06070	0.26	+2.1
1,255,147	-		DZA65_RS06070	0.27	+0.7
1,255,147	-		DZA65_RS06070	0.27	-1.6
1,255,153	+		DZA65_RS06070	0.28	+1.2
1,255,153	+		DZA65_RS06070	0.28	-0.4
1,255,153	+		DZA65_RS06070	0.28	+0.1
1,255,154	-		DZA65_RS06070	0.28	+0.1
1,255,161	+		DZA65_RS06070	0.28	-0.5
1,255,194	+		DZA65_RS06070	0.31	+1.4
1,255,194	+		DZA65_RS06070	0.31	+0.2
1,255,195	-		DZA65_RS06070	0.31	-0.0
1,255,195	-		DZA65_RS06070	0.31	-1.7
1,255,233	+		DZA65_RS06070	0.34	-0.6
1,255,233	+		DZA65_RS06070	0.34	-1.2
1,255,285	+		DZA65_RS06070	0.38	+0.1
1,255,285	+		DZA65_RS06070	0.38	+1.0
1,255,285	+		DZA65_RS06070	0.38	-0.1
1,255,285	+		DZA65_RS06070	0.38	-0.0
1,255,285	+		DZA65_RS06070	0.38	-0.2
1,255,286	-		DZA65_RS06070	0.38	-0.5
1,255,286	-		DZA65_RS06070	0.38	+0.7
1,255,286	-		DZA65_RS06070	0.38	+0.6
1,255,322	-		DZA65_RS06070	0.41	-2.5
1,255,364	+		DZA65_RS06070	0.44	-0.5
1,255,364	+		DZA65_RS06070	0.44	+0.5
1,255,364	+		DZA65_RS06070	0.44	+0.3
1,255,364	+		DZA65_RS06070	0.44	+0.3
1,255,364	+		DZA65_RS06070	0.44	-0.1
1,255,371	+		DZA65_RS06070	0.44	+0.4
1,255,371	+		DZA65_RS06070	0.44	+0.7
1,255,470	-		DZA65_RS06070	0.52	-0.9
1,255,492	+		DZA65_RS06070	0.54	-0.2
1,255,492	+		DZA65_RS06070	0.54	+1.4
1,255,493	-		DZA65_RS06070	0.54	+0.1
1,255,493	-		DZA65_RS06070	0.54	-0.6
1,255,493	-		DZA65_RS06070	0.54	-0.5
1,255,493	-		DZA65_RS06070	0.54	-0.0
1,255,493	-		DZA65_RS06070	0.54	-1.6
1,255,662	+		DZA65_RS06070	0.67	+0.0
1,255,662	+		DZA65_RS06070	0.67	-0.7
1,255,663	-		DZA65_RS06070	0.67	-0.3
1,255,663	-		DZA65_RS06070	0.67	-0.4