Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05410

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,111,354	+				-0.1
1,111,354	+				+0.0
1,111,392	+				-0.6
1,111,392	+				+0.4
1,111,393	-				-1.7
1,111,393	-				-0.2
1,111,510	+				-0.5
1,111,511	-				+0.6
1,111,511	-				-1.2
1,111,534	+				-0.3
1,111,575	-		DZA65_RS05405	0.11	-0.4
1,111,621	+		DZA65_RS05405	0.17	+1.3
1,111,640	+		DZA65_RS05405	0.20	-0.7
1,111,640	+		DZA65_RS05405	0.20	-1.8
1,111,640	+		DZA65_RS05405	0.20	-0.7
1,111,641	-		DZA65_RS05405	0.20	+0.7
1,111,642	+		DZA65_RS05405	0.20	-2.3
1,111,643	-		DZA65_RS05405	0.20	-0.6
1,111,643	-		DZA65_RS05405	0.20	-1.0
1,111,756	+		DZA65_RS05405	0.35	+0.2
1,111,823	+		DZA65_RS05405	0.44	-0.8
1,111,824	-		DZA65_RS05405	0.44	+0.4
1,111,852	+		DZA65_RS05405	0.48	-0.2
1,111,853	-		DZA65_RS05405	0.48	-2.6
1,111,862	+		DZA65_RS05405	0.49	-1.0
1,111,862	+		DZA65_RS05405	0.49	+0.0
1,111,863	-		DZA65_RS05405	0.49	-0.3
1,111,887	+		DZA65_RS05405	0.52	+0.0
1,111,888	-		DZA65_RS05405	0.52	+1.1
1,112,054	+				+1.6
1,112,055	-		DZA65_RS05405	0.74	-0.4
1,112,055	-		DZA65_RS05405	0.74	-1.0
1,112,055	-		DZA65_RS05405	0.74	+0.0
1,112,140	+		DZA65_RS05405	0.85	-0.5
1,112,140	+		DZA65_RS05405	0.85	-1.3
1,112,140	+		DZA65_RS05405	0.85	-1.5
1,112,140	+		DZA65_RS05405	0.85	+0.3
1,112,141	-		DZA65_RS05405	0.86	+0.2
1,112,141	-		DZA65_RS05405	0.86	+0.2
1,112,141	-		DZA65_RS05405	0.86	+0.7
1,112,141	-		DZA65_RS05405	0.86	+0.5
1,112,143	+		DZA65_RS05405	0.86	+0.8
1,112,143	+		DZA65_RS05405	0.86	-0.3
1,112,143	+		DZA65_RS05405	0.86	+0.0
1,112,143	+		DZA65_RS05405	0.86	-0.8
1,112,191	+				-0.4
1,112,191	+				-1.3
1,112,232	+				+1.0
1,112,233	-				-0.8
1,112,233	-				-0.6
1,112,233	-				+1.6
1,112,233	-				+0.8
1,112,242	+				+0.1
1,112,242	+				+0.7
1,112,242	+				-1.6
1,112,243	-				-2.0
1,112,243	-				-0.9
1,112,243	-				-0.9
1,112,243	-				+0.3
1,112,243	-				-1.3
1,112,243	-				+0.5
1,112,243	-				-0.2
1,112,243	-				+0.9
1,112,321	-				+2.2
1,112,332	+				+0.0
1,112,332	+				+1.0
1,112,332	+				+1.0
1,112,332	+				+0.2
1,112,332	+				-0.8
1,112,333	-				-0.1
1,112,333	-				+0.6
1,112,333	-				-2.4
1,112,333	-				-0.3
1,112,354	+				-1.6
1,112,354	+				+3.0
1,112,355	-				-0.2
1,112,355	-				+0.6
1,112,428	+				-1.6
1,112,437	+				-0.7
1,112,629	+		DZA65_RS05410	0.24	-0.4
1,112,629	+		DZA65_RS05410	0.24	-1.0
1,112,629	+		DZA65_RS05410	0.24	-0.7
1,112,630	-		DZA65_RS05410	0.24	-0.4
1,112,726	-		DZA65_RS05410	0.31	+0.6
1,112,726	-		DZA65_RS05410	0.31	-0.6
1,112,775	+		DZA65_RS05410	0.35	+1.0
1,112,785	+		DZA65_RS05410	0.35	+0.0
1,112,785	+		DZA65_RS05410	0.35	+0.0
1,112,785	+		DZA65_RS05410	0.35	-1.5
1,112,785	+		DZA65_RS05410	0.35	+0.5
1,112,786	-		DZA65_RS05410	0.35	+0.4
1,112,786	-		DZA65_RS05410	0.35	-1.2
1,112,786	-		DZA65_RS05410	0.35	-1.8
1,112,855	+		DZA65_RS05410	0.40	-0.8
1,112,855	+		DZA65_RS05410	0.40	-0.7
1,112,856	-		DZA65_RS05410	0.40	-0.2
1,112,856	-		DZA65_RS05410	0.40	+0.4
1,112,856	-		DZA65_RS05410	0.40	-0.6
1,112,869	+		DZA65_RS05410	0.41	-0.4
1,112,870	-		DZA65_RS05410	0.41	-0.4
1,112,870	-		DZA65_RS05410	0.41	-0.4
1,112,870	-		DZA65_RS05410	0.41	+0.6
1,112,870	-		DZA65_RS05410	0.41	-1.3
1,112,983	-		DZA65_RS05410	0.50	-0.5
1,112,983	-		DZA65_RS05410	0.50	-0.3
1,113,035	+		DZA65_RS05410	0.54	-1.2
1,113,036	-		DZA65_RS05410	0.54	-0.6
1,113,141	+		DZA65_RS05410	0.61	-1.0
1,113,142	-		DZA65_RS05410	0.61	+1.3
1,113,142	-		DZA65_RS05410	0.61	-1.3
1,113,172	+		DZA65_RS05410	0.64	+0.0
1,113,172	+		DZA65_RS05410	0.64	-1.2
1,113,172	+		DZA65_RS05410	0.64	-1.9
1,113,172	+		DZA65_RS05410	0.64	-0.5
1,113,173	-		DZA65_RS05410	0.64	+0.0
1,113,178	+				+2.3
1,113,178	+		DZA65_RS05410	0.64	-1.2
1,113,336	+		DZA65_RS05410	0.76	+0.3
1,113,336	+		DZA65_RS05410	0.76	-1.0
1,113,337	-		DZA65_RS05410	0.76	+0.1
1,113,337	-		DZA65_RS05410	0.76	-1.3
1,113,369	+		DZA65_RS05410	0.78	-1.0
1,113,370	-		DZA65_RS05410	0.78	-1.1
1,113,631	-				+0.2
1,113,631	-				-0.9
1,113,631	-				-0.8
1,113,638	+				+0.2
1,113,638	+				-1.7
1,113,656	+				-0.7
1,113,656	+				-0.5
1,113,656	+				+0.6
1,113,656	+				-0.3
1,113,656	+				-0.2
1,113,656	+				-0.7
1,113,656	+				-0.4
1,113,656	+				-1.2
1,113,657	-				-1.8
1,113,657	-				-1.2
1,113,657	-				+0.1
1,113,657	-				+0.1
1,113,657	-				-0.1
1,113,668	+				+0.7
1,113,668	+				-1.0
1,113,668	+				+0.5
1,113,668	+				-1.3
1,113,668	+				-0.6
1,113,668	+				-0.5
1,113,668	+				+1.3
1,113,668	+				+0.7
1,113,668	+				-0.6
1,113,669	-				+0.5
1,113,669	-				+0.4
1,113,669	-				+0.6
1,113,669	-				-0.7
1,113,669	-				-1.3
1,113,671	+				-0.2
1,113,671	+				-0.1
1,113,672	-				-2.2
1,113,672	-				-0.7
1,113,748	+				+0.5
1,113,748	+				+0.2
1,113,748	+				+0.4
1,113,749	-				-0.8
1,113,758	+				-0.4
1,113,759	-				-1.2
1,113,759	-				-0.3
1,113,759	-				-0.3
1,113,772	-				-2.3
1,113,783	+				+0.7
1,113,783	+				+0.5
1,113,784	-				-0.1
1,113,784	-				-0.2
1,113,805	-				+0.0
1,113,819	-				+1.2
1,113,850	+				+1.2
1,113,850	+				-1.0
1,113,850	+				+0.1
1,113,851	-				+0.2
1,113,851	-				-0.6
1,113,851	-				+1.5
1,113,851	-				+0.2
1,113,871	+				+1.0
1,113,872	-				-0.2
1,113,873	+				-1.6
1,113,873	+				+0.1
1,113,873	+				-0.4
1,113,873	+				-0.9
1,113,873	+				+0.1
1,113,874	-				-0.8
1,113,874	-				+0.2
1,113,874	-				-1.4
1,113,874	-				+0.7
1,113,874	-				-0.4
1,113,883	-				+0.2
1,113,891	+				-0.2
1,113,891	+				+1.3
1,113,891	+				-0.4
1,113,892	-				+0.4
1,113,892	-				+0.2
1,113,892	-				+0.3
1,113,942	+				+0.7
1,113,942	+				-0.5
1,113,943	-				-0.8
1,113,943	-				-0.3
1,113,974	+				+0.2
1,113,974	+				+0.5
1,113,974	+				+0.1
1,113,975	-				+0.4
1,113,975	-				-0.1
1,113,984	+		DZA65_RS05415	0.10	+0.5
1,113,984	+		DZA65_RS05415	0.10	-1.6
1,113,985	-		DZA65_RS05415	0.10	+0.7
1,113,985	-		DZA65_RS05415	0.10	-0.7
1,114,028	+		DZA65_RS05415	0.18	-1.1
1,114,028	+		DZA65_RS05415	0.18	-0.8
1,114,029	-		DZA65_RS05415	0.18	+1.3
1,114,029	-		DZA65_RS05415	0.18	-1.4
1,114,074	+		DZA65_RS05415	0.26	-0.8
1,114,074	+		DZA65_RS05415	0.26	+0.4
1,114,074	+		DZA65_RS05415	0.26	+0.2
1,114,075	-		DZA65_RS05415	0.27	+0.5
1,114,075	-		DZA65_RS05415	0.27	+0.7
1,114,075	-		DZA65_RS05415	0.27	-1.1
1,114,075	-		DZA65_RS05415	0.27	-1.8
1,114,075	-		DZA65_RS05415	0.27	+0.3
1,114,256	-		DZA65_RS05415	0.60	+1.0
1,114,306	-		DZA65_RS05415	0.69	-0.9
1,114,318	+		DZA65_RS05415	0.71	-0.1
1,114,318	+		DZA65_RS05415	0.71	+0.5
1,114,318	+		DZA65_RS05415	0.71	-0.7
1,114,318	+		DZA65_RS05415	0.71	-0.1
1,114,318	+		DZA65_RS05415	0.71	-1.6
1,114,318	+		DZA65_RS05415	0.71	+0.4
1,114,318	+		DZA65_RS05415	0.71	-0.2
1,114,318	+		DZA65_RS05415	0.71	-0.3
1,114,319	-		DZA65_RS05415	0.71	-0.3
1,114,319	-		DZA65_RS05415	0.71	-0.6
1,114,319	-		DZA65_RS05415	0.71	-0.8
1,114,319	-		DZA65_RS05415	0.71	+1.0
1,114,319	-		DZA65_RS05415	0.71	+1.0
1,114,319	-		DZA65_RS05415	0.71	+0.2
1,114,319	-		DZA65_RS05415	0.71	-1.6
1,114,319	-		DZA65_RS05415	0.71	+0.2
1,114,319	-		DZA65_RS05415	0.71	+0.9
1,114,319	-		DZA65_RS05415	0.71	-1.0
1,114,319	-		DZA65_RS05415	0.71	-1.0
1,114,319	-		DZA65_RS05415	0.71	+0.2
1,114,319	-		DZA65_RS05415	0.71	-0.6
1,114,319	-		DZA65_RS05415	0.71	+0.3
1,114,323	+		DZA65_RS05415	0.72	-0.1
1,114,323	+		DZA65_RS05415	0.72	-0.7
1,114,324	-		DZA65_RS05415	0.72	+0.7
1,114,454	-				+0.0
1,114,454	-				-0.5
1,114,475	+				-0.3
1,114,489	+				+0.2
1,114,489	+				-0.2
1,114,489	+				-0.3
1,114,551	+				-0.0
1,114,568	+				+0.5
1,114,568	+				+0.4
1,114,569	-				+0.0
1,114,569	-				+0.3
1,114,598	+				+0.5
1,114,631	+				-0.7
1,114,635	+				+1.3
1,114,643	+				-0.8