Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05125

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,056,603	+				-0.9
1,056,603	+				+0.3
1,056,603	+				-1.3
1,056,603	+				-1.0
1,056,603	+				+0.6
1,056,603	+				+1.7
1,056,603	+				-0.4
1,056,603	+				-0.1
1,056,638	+				-0.4
1,056,638	+				+0.0
1,056,639	-				+1.0
1,056,649	-				-0.1
1,056,715	+				+0.7
1,056,716	-				-0.4
1,056,736	-				-0.4
1,056,770	-				+0.4
1,056,778	+				-0.5
1,056,778	+				+0.7
1,056,778	+				-0.6
1,056,778	+				+0.2
1,056,779	-				-0.9
1,056,791	+				-0.7
1,056,791	+				-1.7
1,056,791	+				-0.8
1,056,791	+				+0.6
1,056,791	+				-0.1
1,056,792	-				+0.1
1,056,792	-				-0.6
1,056,792	-				-1.2
1,056,807	+				+0.6
1,056,837	+				-0.8
1,056,837	+				+0.5
1,056,837	+				-0.2
1,056,837	+				-1.0
1,056,837	+				-0.1
1,056,838	-				-0.2
1,056,838	-				-0.3
1,056,838	-				-0.1
1,056,838	-				-0.5
1,056,848	+				-0.4
1,056,848	+				-0.4
1,056,849	-				+0.4
1,056,849	-				+2.2
1,056,849	-				+0.0
1,056,859	+				-0.1
1,056,867	+				-1.6
1,056,868	-				-0.4
1,056,868	-				+0.3
1,056,949	-				-1.4
1,056,949	-				+0.4
1,056,949	-				-0.6
1,056,960	+				+0.3
1,056,960	+				+0.5
1,056,960	+				-1.6
1,056,960	+				-1.0
1,056,961	-				-0.0
1,056,965	-				-0.6
1,056,965	-				-0.6
1,057,018	+		DZA65_RS05115	0.26	-1.0
1,057,019	-		DZA65_RS05115	0.27	-0.4
1,057,076	+		DZA65_RS05115	0.47	-0.1
1,057,076	+		DZA65_RS05115	0.47	-1.2
1,057,076	+		DZA65_RS05115	0.47	+0.8
1,057,076	+		DZA65_RS05115	0.47	+0.0
1,057,076	+		DZA65_RS05115	0.47	+0.2
1,057,076	+		DZA65_RS05115	0.47	-1.2
1,057,076	+		DZA65_RS05115	0.47	-1.1
1,057,076	+		DZA65_RS05115	0.47	+0.7
1,057,076	+		DZA65_RS05115	0.47	+0.2
1,057,076	+		DZA65_RS05115	0.47	-1.5
1,057,076	+		DZA65_RS05115	0.47	-0.0
1,057,076	+		DZA65_RS05115	0.47	+0.2
1,057,076	+		DZA65_RS05115	0.47	-0.0
1,057,076	+		DZA65_RS05115	0.47	-0.2
1,057,076	+		DZA65_RS05115	0.47	-1.8
1,057,076	+		DZA65_RS05115	0.47	-0.7
1,057,076	+		DZA65_RS05115	0.47	-1.4
1,057,076	+		DZA65_RS05115	0.47	-0.6
1,057,076	+		DZA65_RS05115	0.47	+0.4
1,057,076	+		DZA65_RS05115	0.47	-1.1
1,057,076	+		DZA65_RS05115	0.47	-0.9
1,057,076	+		DZA65_RS05115	0.47	-0.4
1,057,076	+		DZA65_RS05115	0.47	+0.7
1,057,076	+		DZA65_RS05115	0.47	+1.0
1,057,076	+		DZA65_RS05115	0.47	+0.0
1,057,076	+		DZA65_RS05115	0.47	-0.3
1,057,076	+		DZA65_RS05115	0.47	+0.9
1,057,076	+		DZA65_RS05115	0.47	+2.0
1,057,077	-		DZA65_RS05115	0.47	-0.2
1,057,077	-		DZA65_RS05115	0.47	+0.0
1,057,077	-		DZA65_RS05115	0.47	-1.1
1,057,077	-		DZA65_RS05115	0.47	+0.0
1,057,077	-		DZA65_RS05115	0.47	-0.2
1,057,077	-		DZA65_RS05115	0.47	+0.1
1,057,077	-		DZA65_RS05115	0.47	+1.0
1,057,077	-		DZA65_RS05115	0.47	-0.9
1,057,077	-		DZA65_RS05115	0.47	-1.2
1,057,077	-		DZA65_RS05115	0.47	-0.2
1,057,077	-		DZA65_RS05115	0.47	-0.6
1,057,077	-		DZA65_RS05115	0.47	+0.4
1,057,077	-		DZA65_RS05115	0.47	+0.0
1,057,077	-		DZA65_RS05115	0.47	-1.2
1,057,077	-				+1.0
1,057,077	-		DZA65_RS05115	0.47	+2.3
1,057,148	-		DZA65_RS05115	0.72	+1.4
1,057,177	+		DZA65_RS05115	0.83	+1.0
1,057,177	+				+1.3
1,057,177	+		DZA65_RS05115	0.83	-0.0
1,057,177	+		DZA65_RS05115	0.83	-1.3
1,057,177	+		DZA65_RS05115	0.83	-0.5
1,057,177	+		DZA65_RS05115	0.83	+0.4
1,057,177	+		DZA65_RS05115	0.83	-0.3
1,057,178	-		DZA65_RS05115	0.83	+0.0
1,057,178	-		DZA65_RS05115	0.83	+0.1
1,057,178	-		DZA65_RS05115	0.83	-1.0
1,057,178	-				+0.6
1,057,179	+		DZA65_RS05115	0.83	+0.3
1,057,179	+		DZA65_RS05115	0.83	+1.0
1,057,179	+		DZA65_RS05115	0.83	+0.8
1,057,179	+		DZA65_RS05115	0.83	-0.2
1,057,179	+		DZA65_RS05115	0.83	-0.3
1,057,180	-		DZA65_RS05115	0.84	+0.2
1,057,180	-		DZA65_RS05115	0.84	+0.8
1,057,180	-		DZA65_RS05115	0.84	+0.6
1,057,180	-		DZA65_RS05115	0.84	-0.8
1,057,203	-				-0.2
1,057,223	+				-0.2
1,057,224	-				-0.6
1,057,224	-				-0.2
1,057,322	+				+0.1
1,057,322	+				+0.5
1,057,322	+				-0.4
1,057,322	+				-0.6
1,057,323	-				-0.6
1,057,336	+				+1.8
1,057,336	+				-0.3
1,057,336	+				+0.1
1,057,336	+				-1.9
1,057,337	-				+0.1
1,057,337	-				-1.0
1,057,348	-				+0.8
1,057,411	+				-1.0
1,057,427	+				+0.7
1,057,428	-				+0.1
1,057,449	+				+1.4
1,057,479	+				+0.7
1,057,480	-				-0.1
1,057,480	-				-0.6
1,057,514	+				-0.3
1,057,514	+				-0.7
1,057,514	+				-1.2
1,057,514	+				-0.9
1,057,514	+				-1.6
1,057,514	+				-0.2
1,057,514	+				-1.3
1,057,514	+				+0.1
1,057,514	+				+0.3
1,057,514	+				+1.0
1,057,514	+				-0.2
1,057,514	+				-1.7
1,057,514	+				+0.2
1,057,514	+				-0.2
1,057,514	+				-0.7
1,057,514	+				+0.5
1,057,514	+				-0.5
1,057,514	+				+0.4
1,057,514	+				-0.9
1,057,514	+				-1.0
1,057,515	-				+0.7
1,057,515	-				+0.2
1,057,515	-				-0.2
1,057,515	-				+0.7
1,057,515	-				-1.0
1,057,515	-				+1.2
1,057,515	-				-0.5
1,057,515	-				+0.9
1,057,515	-				-0.1
1,057,515	-				+1.4
1,057,515	-				-0.3
1,057,516	+				-1.9
1,057,516	+				+0.7
1,057,516	+				-1.3
1,057,516	+				+1.6
1,057,516	+				+0.4
1,057,516	+				+0.0
1,057,516	+				-0.3
1,057,516	+				+0.7
1,057,516	+				-0.6
1,057,517	-				-1.8
1,057,517	-				-1.6
1,057,523	+				-0.6
1,057,523	+				-1.1
1,057,523	+				+1.0
1,057,523	+				-1.1
1,057,523	+				-0.5
1,057,524	-				-1.1
1,057,524	-				-1.6
1,057,559	+				-0.0
1,057,559	+				-0.2
1,057,559	+				+0.8
1,057,559	+				-0.6
1,057,559	+				+0.8
1,057,559	+				-0.7
1,057,559	+				+0.1
1,057,560	-				+0.1
1,057,560	-				-1.3
1,057,560	-				+0.4
1,057,560	-				-0.6
1,057,560	-				+0.1
1,057,560	-				+0.0
1,057,560	-				-2.8
1,057,560	-				-1.9
1,057,560	-				-1.0
1,057,563	+				-1.4
1,057,563	+				-0.3
1,057,563	+				-1.0
1,057,563	+				+0.5
1,057,563	+				-0.6
1,057,563	+				+0.4
1,057,563	+				-0.7
1,057,563	+				+0.1
1,057,564	-				-3.1
1,057,564	-				-0.3
1,057,564	-				-0.1
1,057,564	-				-0.9
1,057,564	-				+0.8
1,057,564	-				-0.4
1,057,564	-				-2.9
1,057,611	-		DZA65_RS05125	0.13	-0.4
1,057,627	+		DZA65_RS05125	0.17	-0.2
1,057,627	+		DZA65_RS05125	0.17	-0.1
1,057,627	+		DZA65_RS05125	0.17	+0.1
1,057,627	+		DZA65_RS05125	0.17	+1.2
1,057,628	-		DZA65_RS05125	0.17	-0.1
1,057,628	-		DZA65_RS05125	0.17	-1.4
1,057,628	-		DZA65_RS05125	0.17	-1.0
1,057,628	-		DZA65_RS05125	0.17	+1.8
1,057,657	+		DZA65_RS05125	0.25	-0.4
1,057,657	+		DZA65_RS05125	0.25	-0.6
1,057,658	-		DZA65_RS05125	0.25	+0.6
1,057,658	-		DZA65_RS05125	0.25	-0.3
1,057,658	-		DZA65_RS05125	0.25	+1.0
1,057,658	-		DZA65_RS05125	0.25	+1.5
1,057,658	-		DZA65_RS05125	0.25	+0.7
1,057,658	-		DZA65_RS05125	0.25	-2.8
1,057,658	-		DZA65_RS05125	0.25	+0.4
1,057,658	-		DZA65_RS05125	0.25	+0.2
1,057,658	-		DZA65_RS05125	0.25	+0.5
1,057,658	-		DZA65_RS05125	0.25	-1.0
1,057,658	-		DZA65_RS05125	0.25	+1.0
1,057,686	-		DZA65_RS05125	0.33	+0.3
1,057,699	+		DZA65_RS05125	0.36	-2.0
1,057,700	-		DZA65_RS05125	0.37	-0.9
1,057,700	-		DZA65_RS05125	0.37	-0.6
1,057,700	-		DZA65_RS05125	0.37	+0.7
1,057,757	+		DZA65_RS05125	0.52	-1.8
1,057,757	+		DZA65_RS05125	0.52	-1.0
1,057,758	-		DZA65_RS05125	0.52	-1.0
1,057,802	-		DZA65_RS05125	0.64	+0.6
1,057,802	-		DZA65_RS05125	0.64	-2.2
1,057,839	+		DZA65_RS05125	0.74	+0.0
1,057,955	+				-0.4
1,057,956	-				+0.0
1,058,005	+				-0.7
1,058,026	-				-0.4
1,058,036	+				-0.3
1,058,036	+				+0.5
1,058,037	-				-1.5
1,058,037	-				-0.1
1,058,088	+				-0.3
1,058,135	+				-0.6
1,058,135	+				+0.1
1,058,135	+				+0.0
1,058,135	+				-0.4
1,058,135	+				-1.7
1,058,136	-				+0.0
1,058,201	+				+0.2
1,058,203	+				-1.8
1,058,203	+				-0.3
1,058,203	+				-0.1
1,058,203	+				-0.2
1,058,203	+				-0.5
1,058,203	+				-0.2
1,058,203	+				-0.4
1,058,203	+				-0.7
1,058,203	+				-2.2
1,058,203	+				-2.3
1,058,204	-				-0.3
1,058,204	-				-0.1
1,058,233	-				-1.1
1,058,233	-				+0.0
1,058,233	-				-0.2
1,058,266	+				-1.8
1,058,266	+				-0.2
1,058,266	+				+0.8
1,058,266	+				-0.6
1,058,267	-				-1.4
1,058,267	-				-0.3
1,058,267	-				+0.0
1,058,267	-				-0.4
1,058,267	-				-1.4
1,058,268	+				-0.4
1,058,303	-				+0.1
1,058,308	+				+0.0
1,058,308	+				+0.4
1,058,309	-				-1.3
1,058,309	-				-1.6
1,058,310	+				-0.1
1,058,310	+				+0.2
1,058,310	+				-0.9
1,058,310	+				+0.8
1,058,311	-				+0.3
1,058,356	+				-0.4
1,058,357	-				-0.9
1,058,398	+				+0.2
1,058,398	+				-2.9
1,058,398	+				-0.6
1,058,398	+				+0.4
1,058,398	+				-0.3
1,058,399	-				+0.7
1,058,399	-				+0.4
1,058,419	-				+0.2
1,058,419	-				+0.4
1,058,564	+		DZA65_RS05130	0.37	-0.1
1,058,564	+		DZA65_RS05130	0.37	+0.4
1,058,564	+		DZA65_RS05130	0.37	+0.3
1,058,565	-		DZA65_RS05130	0.37	-2.6
1,058,565	-		DZA65_RS05130	0.37	-0.8
1,058,755	+		DZA65_RS05130	0.76	+0.7
1,058,757	+		DZA65_RS05130	0.77	-1.4
1,058,757	+		DZA65_RS05130	0.77	-1.6
1,058,757	+		DZA65_RS05130	0.77	-0.7
1,058,758	-		DZA65_RS05130	0.77	-0.5
1,058,758	-		DZA65_RS05130	0.77	+0.4
1,058,758	-		DZA65_RS05130	0.77	-3.2
1,058,758	-		DZA65_RS05130	0.77	-0.4
1,058,771	+		DZA65_RS05130	0.80	-0.1
1,058,771	+		DZA65_RS05130	0.80	-1.0
1,058,771	+		DZA65_RS05130	0.80	+0.0
1,058,771	+		DZA65_RS05130	0.80	+0.1
1,058,771	+		DZA65_RS05130	0.80	-0.7
1,058,771	+		DZA65_RS05130	0.80	+0.3
1,058,772	-		DZA65_RS05130	0.80	+1.0
1,058,772	-		DZA65_RS05130	0.80	-1.9
1,058,772	-		DZA65_RS05130	0.80	+0.0
1,058,798	+		DZA65_RS05130	0.85	+0.0
1,058,867	+				+0.2
1,058,867	+				-1.9
1,058,867	+				-0.7
1,058,867	+				-0.4
1,058,868	-				-0.8
1,058,868	-				-0.4
1,058,868	-				-0.6
1,058,868	-				+0.0
1,058,872	-				-1.0
1,058,872	-				+1.0
1,058,872	-				+0.0
1,058,872	-				-1.6
1,058,897	+				+0.2
1,058,897	+				-1.9
1,058,898	-				+0.5
1,058,898	-				-0.1
1,058,898	-				+0.4
1,058,898	-				+0.5
1,058,898	-				-0.1
1,058,898	-				-0.2
1,058,914	-				+0.4