Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04335 and DZA65_RS04345 are separated by 581 nucleotides DZA65_RS04345 and DZA65_RS04350 are separated by 307 nucleotides DZA65_RS04350 and DZA65_RS04355 are separated by 41 nucleotides
DZA65_RS04335: DZA65_RS04335 - HAMP domain-containing protein, at 905,390 to 906,808
_RS04335
DZA65_RS04345: DZA65_RS04345 - helix-turn-helix transcriptional regulator, at 907,390 to 907,953
_RS04345
DZA65_RS04350: DZA65_RS04350 - PTS glucose transporter subunit IIA, at 908,261 to 908,770
_RS04350
DZA65_RS04355: DZA65_RS04355 - phosphoenolpyruvate-protein phosphotransferase PtsI, at 908,812 to 910,539
_RS04355
Position (kb) 907
908 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 906.439 kb on + strand, within DZA65_RS04335 at 906.439 kb on + strand, within DZA65_RS04335 at 906.440 kb on - strand, within DZA65_RS04335 at 906.440 kb on - strand, within DZA65_RS04335 at 906.461 kb on + strand, within DZA65_RS04335 at 906.461 kb on + strand, within DZA65_RS04335 at 906.461 kb on + strand, within DZA65_RS04335 at 906.461 kb on + strand, within DZA65_RS04335 at 906.461 kb on + strand, within DZA65_RS04335 at 906.461 kb on + strand, within DZA65_RS04335 at 906.462 kb on - strand, within DZA65_RS04335 at 906.462 kb on - strand, within DZA65_RS04335 at 906.462 kb on - strand, within DZA65_RS04335 at 906.462 kb on - strand, within DZA65_RS04335 at 906.462 kb on - strand, within DZA65_RS04335 at 906.589 kb on + strand, within DZA65_RS04335 at 906.590 kb on - strand, within DZA65_RS04335 at 906.790 kb on + strand at 906.790 kb on + strand at 906.790 kb on + strand at 906.790 kb on + strand at 906.790 kb on + strand at 906.791 kb on - strand at 906.791 kb on - strand at 906.819 kb on + strand at 906.821 kb on + strand at 906.821 kb on + strand at 906.821 kb on + strand at 906.821 kb on + strand at 906.822 kb on - strand at 906.822 kb on - strand at 906.822 kb on - strand at 906.822 kb on - strand at 906.822 kb on - strand at 906.822 kb on - strand at 906.822 kb on - strand at 906.842 kb on + strand at 906.843 kb on - strand at 906.898 kb on + strand at 906.912 kb on + strand at 906.912 kb on + strand at 906.913 kb on - strand at 906.913 kb on - strand at 906.913 kb on - strand at 906.913 kb on - strand at 906.913 kb on - strand at 906.926 kb on + strand at 906.927 kb on - strand at 906.940 kb on + strand at 906.940 kb on + strand at 906.940 kb on + strand at 906.940 kb on + strand at 906.940 kb on + strand at 906.940 kb on + strand at 906.941 kb on - strand at 906.941 kb on - strand at 906.941 kb on - strand at 906.941 kb on - strand at 906.954 kb on + strand at 906.954 kb on + strand at 906.954 kb on + strand at 906.955 kb on - strand at 906.955 kb on - strand at 906.955 kb on - strand at 906.955 kb on - strand at 906.968 kb on + strand at 906.968 kb on + strand at 906.968 kb on + strand at 906.968 kb on + strand at 906.968 kb on + strand at 906.969 kb on - strand at 906.969 kb on - strand at 906.969 kb on - strand at 906.969 kb on - strand at 906.982 kb on + strand at 906.982 kb on + strand at 906.982 kb on + strand at 906.982 kb on - strand at 906.983 kb on - strand at 906.983 kb on - strand at 906.983 kb on - strand at 906.983 kb on - strand at 906.984 kb on + strand at 906.984 kb on + strand at 906.984 kb on + strand at 906.984 kb on + strand at 906.984 kb on + strand at 906.984 kb on + strand at 906.984 kb on + strand at 906.984 kb on + strand at 906.984 kb on + strand at 906.984 kb on + strand at 906.984 kb on + strand at 906.984 kb on + strand at 906.985 kb on - strand at 906.985 kb on - strand at 906.985 kb on - strand at 906.985 kb on - strand at 906.985 kb on - strand at 906.985 kb on - strand at 906.985 kb on - strand at 906.985 kb on - strand at 906.985 kb on - strand at 906.985 kb on - strand at 906.985 kb on - strand at 906.985 kb on - strand at 906.987 kb on + strand at 906.987 kb on + strand at 906.987 kb on + strand at 906.987 kb on + strand at 906.987 kb on + strand at 906.987 kb on + strand at 906.987 kb on + strand at 906.987 kb on + strand at 906.987 kb on + strand at 906.987 kb on + strand at 906.987 kb on + strand at 906.988 kb on - strand at 906.988 kb on - strand at 906.988 kb on - strand at 906.988 kb on - strand at 906.988 kb on - strand at 906.988 kb on - strand at 906.988 kb on - strand at 906.988 kb on - strand at 906.996 kb on + strand at 906.997 kb on - strand at 906.997 kb on - strand at 906.998 kb on + strand at 906.998 kb on + strand at 906.998 kb on + strand at 906.998 kb on + strand at 906.998 kb on + strand at 906.998 kb on + strand at 906.999 kb on - strand at 906.999 kb on - strand at 906.999 kb on - strand at 906.999 kb on - strand at 906.999 kb on - strand at 907.064 kb on + strand at 907.206 kb on + strand at 907.207 kb on - strand at 907.236 kb on - strand at 907.236 kb on - strand at 907.236 kb on - strand at 907.274 kb on + strand at 907.274 kb on + strand at 907.274 kb on + strand at 907.274 kb on + strand at 907.275 kb on - strand at 907.275 kb on - strand at 907.275 kb on - strand at 907.311 kb on + strand at 907.311 kb on + strand at 907.312 kb on - strand at 907.325 kb on + strand at 907.340 kb on + strand at 907.341 kb on - strand at 907.341 kb on - strand at 907.341 kb on - strand at 907.342 kb on + strand at 907.342 kb on + strand at 907.342 kb on + strand at 907.342 kb on + strand at 907.343 kb on - strand at 907.343 kb on - strand at 907.345 kb on + strand at 907.345 kb on + strand at 907.345 kb on + strand at 907.345 kb on + strand at 907.345 kb on + strand at 907.345 kb on + strand at 907.345 kb on + strand at 907.345 kb on + strand at 907.345 kb on + strand at 907.346 kb on - strand at 907.346 kb on - strand at 907.346 kb on - strand at 907.346 kb on - strand at 907.346 kb on - strand at 907.346 kb on - strand at 907.346 kb on - strand at 907.346 kb on - strand at 907.346 kb on - strand at 907.346 kb on - strand at 907.383 kb on - strand at 907.389 kb on + strand at 907.389 kb on + strand at 907.389 kb on + strand at 907.390 kb on - strand at 907.390 kb on - strand at 907.390 kb on - strand at 907.600 kb on + strand, within DZA65_RS04345 at 907.627 kb on + strand, within DZA65_RS04345 at 907.628 kb on - strand, within DZA65_RS04345 at 907.697 kb on + strand, within DZA65_RS04345 at 907.697 kb on + strand, within DZA65_RS04345 at 907.697 kb on + strand, within DZA65_RS04345 at 907.698 kb on - strand, within DZA65_RS04345 at 907.698 kb on - strand, within DZA65_RS04345 at 907.698 kb on - strand, within DZA65_RS04345 at 907.698 kb on - strand, within DZA65_RS04345 at 907.703 kb on + strand, within DZA65_RS04345 at 907.761 kb on - strand, within DZA65_RS04345 at 907.812 kb on + strand, within DZA65_RS04345 at 907.813 kb on - strand, within DZA65_RS04345 at 907.813 kb on - strand, within DZA65_RS04345 at 907.813 kb on - strand, within DZA65_RS04345 at 907.863 kb on - strand, within DZA65_RS04345 at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.945 kb on - strand at 907.945 kb on - strand at 907.945 kb on - strand at 907.945 kb on - strand at 907.945 kb on - strand at 907.945 kb on - strand at 907.945 kb on - strand at 907.971 kb on + strand at 907.971 kb on + strand at 907.972 kb on - strand at 907.972 kb on - strand at 907.974 kb on + strand at 907.974 kb on + strand at 907.975 kb on - strand at 907.975 kb on - strand at 907.975 kb on - strand at 907.975 kb on - strand at 907.975 kb on - strand at 907.983 kb on - strand at 907.983 kb on - strand at 908.028 kb on + strand at 908.028 kb on + strand at 908.028 kb on + strand at 908.028 kb on + strand at 908.029 kb on - strand at 908.029 kb on - strand at 908.029 kb on - strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.037 kb on - strand at 908.037 kb on - strand at 908.037 kb on - strand at 908.037 kb on - strand at 908.037 kb on - strand at 908.037 kb on - strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.044 kb on + strand at 908.044 kb on + strand at 908.044 kb on + strand at 908.044 kb on + strand at 908.045 kb on - strand at 908.045 kb on - strand at 908.045 kb on - strand at 908.045 kb on - strand at 908.121 kb on + strand at 908.121 kb on + strand at 908.122 kb on - strand at 908.181 kb on + strand at 908.181 kb on + strand at 908.182 kb on - strand at 908.198 kb on + strand at 908.208 kb on + strand at 908.208 kb on + strand at 908.208 kb on + strand at 908.262 kb on + strand at 908.262 kb on + strand at 908.262 kb on + strand at 908.564 kb on - strand, within DZA65_RS04350 at 908.614 kb on + strand, within DZA65_RS04350 at 908.648 kb on + strand, within DZA65_RS04350 at 908.782 kb on - strand at 908.792 kb on - strand at 908.845 kb on + strand at 908.857 kb on + strand at 908.857 kb on + strand at 908.857 kb on + strand at 908.857 kb on + strand at 908.857 kb on + strand at 908.857 kb on + strand at 908.858 kb on - strand at 908.858 kb on - strand at 908.858 kb on - strand at 908.858 kb on - strand at 908.858 kb on - strand at 908.881 kb on + strand at 908.915 kb on + strand at 908.915 kb on + strand at 908.916 kb on - strand at 908.916 kb on - strand at 908.916 kb on - strand at 908.916 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 906,439 + DZA65_RS04335 0.74 +0.7 906,439 + DZA65_RS04335 0.74 -0.1 906,440 - DZA65_RS04335 0.74 -0.2 906,440 - DZA65_RS04335 0.74 +0.3 906,461 + DZA65_RS04335 0.75 +0.3 906,461 + DZA65_RS04335 0.75 -1.2 906,461 + DZA65_RS04335 0.75 +1.0 906,461 + DZA65_RS04335 0.75 +0.2 906,461 + DZA65_RS04335 0.75 -1.1 906,461 + DZA65_RS04335 0.75 -0.2 906,462 - DZA65_RS04335 0.76 -1.5 906,462 - DZA65_RS04335 0.76 -0.5 906,462 - DZA65_RS04335 0.76 -0.3 906,462 - DZA65_RS04335 0.76 +0.1 906,462 - DZA65_RS04335 0.76 -0.3 906,589 + DZA65_RS04335 0.84 +0.7 906,590 - DZA65_RS04335 0.85 +0.0 906,790 + -0.1 906,790 + -1.3 906,790 + -0.1 906,790 + -2.4 906,790 + +0.0 906,791 - -0.1 906,791 - +0.5 906,819 + -0.9 906,821 + +0.2 906,821 + -0.6 906,821 + +0.8 906,821 + +1.0 906,822 - -0.8 906,822 - -0.8 906,822 - -0.8 906,822 - +0.2 906,822 - -0.8 906,822 - +0.2 906,822 - -0.6 906,842 + +0.1 906,843 - -0.3 906,898 + -0.2 906,912 + -0.3 906,912 + +0.1 906,913 - +1.3 906,913 - -0.3 906,913 - +0.3 906,913 - -0.8 906,913 - -0.4 906,926 + -1.3 906,927 - -0.5 906,940 + +0.8 906,940 + -0.4 906,940 + -0.5 906,940 + +0.2 906,940 + -1.0 906,940 + -1.8 906,941 - -0.5 906,941 - +0.0 906,941 - +1.0 906,941 - +0.3 906,954 + -0.3 906,954 + +0.5 906,954 + -0.2 906,955 - -0.7 906,955 - +0.0 906,955 - -0.1 906,955 - +0.2 906,968 + +1.0 906,968 + -0.7 906,968 + +0.0 906,968 + +0.9 906,968 + +0.4 906,969 - +0.5 906,969 - -0.4 906,969 - +0.4 906,969 - -1.9 906,982 + -1.8 906,982 + +1.0 906,982 + +0.4 906,982 - -1.0 906,983 - -0.2 906,983 - -1.0 906,983 - -0.5 906,983 - +0.3 906,984 + -0.4 906,984 + +0.2 906,984 + -1.8 906,984 + -0.3 906,984 + +0.2 906,984 + -0.8 906,984 + -0.7 906,984 + -1.0 906,984 + -0.4 906,984 + -0.2 906,984 + -0.9 906,984 + -0.4 906,985 - +0.0 906,985 - -0.2 906,985 - -1.2 906,985 - +0.6 906,985 - -0.3 906,985 - +0.0 906,985 - -0.5 906,985 - +0.6 906,985 - -0.6 906,985 - +0.6 906,985 - -0.3 906,985 - +1.2 906,987 + -1.8 906,987 + +1.0 906,987 + -0.9 906,987 + +0.1 906,987 + -0.3 906,987 + -0.2 906,987 + -1.8 906,987 + -1.2 906,987 + +1.3 906,987 + +0.6 906,987 + +1.0 906,988 - -0.8 906,988 - -1.3 906,988 - -0.1 906,988 - +0.3 906,988 - -0.1 906,988 - -1.3 906,988 - +0.5 906,988 - +0.6 906,996 + -1.2 906,997 - +0.0 906,997 - -1.8 906,998 + +1.5 906,998 + +0.7 906,998 + -2.5 906,998 + +0.7 906,998 + -0.2 906,998 + +0.5 906,999 - -2.0 906,999 - +0.6 906,999 - -0.2 906,999 - -1.0 906,999 - -0.0 907,064 + -1.4 907,206 + +0.0 907,207 - +0.5 907,236 - -2.8 907,236 - -1.7 907,236 - +0.8 907,274 + +0.0 907,274 + -1.4 907,274 + +0.8 907,274 + -0.8 907,275 - -2.0 907,275 - -0.1 907,275 - -0.1 907,311 + +0.3 907,311 + +0.3 907,312 - +0.1 907,325 + -1.5 907,340 + -0.5 907,341 - -0.6 907,341 - -1.0 907,341 - -0.1 907,342 + -2.0 907,342 + -0.5 907,342 + +0.9 907,342 + +0.0 907,343 - -0.8 907,343 - -1.1 907,345 + +0.3 907,345 + -0.4 907,345 + +0.8 907,345 + +0.1 907,345 + -1.5 907,345 + -1.1 907,345 + +0.0 907,345 + -1.1 907,345 + +2.6 907,346 - +0.3 907,346 - -0.4 907,346 - -1.0 907,346 - -0.2 907,346 - +0.0 907,346 - +0.0 907,346 - +0.4 907,346 - -0.2 907,346 - -1.3 907,346 - -0.3 907,383 - +0.3 907,389 + -0.3 907,389 + -0.6 907,389 + -0.2 907,390 - -1.0 907,390 - -0.4 907,390 - +0.6 907,600 + DZA65_RS04345 0.37 +0.0 907,627 + DZA65_RS04345 0.42 +0.7 907,628 - DZA65_RS04345 0.42 +0.1 907,697 + DZA65_RS04345 0.54 +1.5 907,697 + DZA65_RS04345 0.54 +1.4 907,697 + DZA65_RS04345 0.54 +0.0 907,698 - DZA65_RS04345 0.55 -0.4 907,698 - DZA65_RS04345 0.55 -0.9 907,698 - DZA65_RS04345 0.55 +0.6 907,698 - DZA65_RS04345 0.55 -1.2 907,703 + DZA65_RS04345 0.55 +1.6 907,761 - DZA65_RS04345 0.66 +0.8 907,812 + DZA65_RS04345 0.75 -0.1 907,813 - DZA65_RS04345 0.75 -1.5 907,813 - DZA65_RS04345 0.75 +0.6 907,813 - DZA65_RS04345 0.75 -0.0 907,863 - DZA65_RS04345 0.84 +0.7 907,944 + +0.5 907,944 + -0.7 907,944 + +0.2 907,944 + +0.1 907,944 + -0.5 907,944 + -1.1 907,944 + -1.1 907,944 + -1.9 907,944 + -0.8 907,945 - +0.0 907,945 - -0.8 907,945 - -1.1 907,945 - -0.5 907,945 - +0.8 907,945 - +0.2 907,945 - -0.3 907,971 + +0.2 907,971 + +0.2 907,972 - +2.0 907,972 - -1.8 907,974 + +0.0 907,974 + -0.8 907,975 - -0.8 907,975 - +0.0 907,975 - -1.5 907,975 - -0.7 907,975 - -0.3 907,983 - -1.3 907,983 - +0.3 908,028 + -0.7 908,028 + -0.8 908,028 + +0.1 908,028 + -2.3 908,029 - +0.3 908,029 - +0.3 908,029 - -0.5 908,032 + +0.1 908,032 + -1.5 908,032 + -0.2 908,032 + -0.2 908,032 + -1.0 908,032 + +0.5 908,032 + -0.5 908,032 + +0.3 908,032 + -0.8 908,032 + -0.3 908,032 + -1.5 908,032 + +0.5 908,032 + -0.4 908,032 + -2.7 908,032 + -1.5 908,032 + -0.5 908,032 + -0.5 908,032 + +0.3 908,032 + +0.3 908,032 + +0.7 908,032 + +1.0 908,032 + -0.8 908,032 + -0.3 908,032 + -0.4 908,033 - -0.1 908,033 - -0.3 908,033 - +0.0 908,033 - +0.8 908,033 - -0.5 908,033 - +0.1 908,033 - -0.4 908,033 - -1.2 908,033 - -0.1 908,033 - +0.9 908,033 - +0.2 908,033 - -0.3 908,033 - +0.2 908,036 + -1.4 908,036 + +2.0 908,036 + +0.2 908,036 + +0.3 908,036 + -0.2 908,036 + -0.1 908,036 + -0.7 908,036 + -1.0 908,036 + -0.4 908,036 + -0.7 908,036 + +0.4 908,036 + -0.2 908,036 + -0.1 908,037 - -1.3 908,037 - -1.2 908,037 - -2.6 908,037 - -1.0 908,037 - -1.8 908,037 - +0.0 908,040 + +1.0 908,040 + -1.0 908,040 + -0.5 908,040 + +0.4 908,040 + +0.6 908,040 + -0.1 908,040 + +0.1 908,040 + -0.2 908,040 + -2.4 908,040 + -1.0 908,040 + +0.6 908,040 + +1.9 908,041 - -0.8 908,041 - -0.2 908,041 - +0.4 908,041 - -0.1 908,041 - -0.7 908,041 - +0.5 908,041 - -0.3 908,041 - +1.0 908,044 + -0.8 908,044 + -0.7 908,044 + -0.1 908,044 + -0.4 908,045 - -1.0 908,045 - -1.2 908,045 - -0.7 908,045 - -1.4 908,121 + +0.0 908,121 + -0.6 908,122 - -0.3 908,181 + +0.2 908,181 + +0.6 908,182 - -0.2 908,198 + +0.7 908,208 + -0.2 908,208 + -2.7 908,208 + -2.0 908,262 + +0.0 908,262 + -0.7 908,262 + -0.9 908,564 - DZA65_RS04350 0.59 -1.0 908,614 + DZA65_RS04350 0.69 -0.2 908,648 + DZA65_RS04350 0.76 -0.4 908,782 - -0.3 908,792 - +0.8 908,845 + -1.2 908,857 + -2.7 908,857 + -1.9 908,857 + -1.9 908,857 + -1.1 908,857 + -2.0 908,857 + -3.3 908,858 - -1.5 908,858 - -1.0 908,858 - +0.4 908,858 - -1.2 908,858 - -0.5 908,881 + -1.5 908,915 + -0.5 908,915 + -0.2 908,916 - -1.2 908,916 - +0.1 908,916 - -1.0 908,916 - +0.0
Or see this region's nucleotide sequence