Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS02565

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS02560 and DZA65_RS02565 are separated by 104 nucleotidesDZA65_RS02565 and DZA65_RS02570 are separated by 73 nucleotides DZA65_RS02560: DZA65_RS02560 - iron ABC transporter permease, at 550,301 to 551,299 _RS02560 DZA65_RS02565: DZA65_RS02565 - alkyl hydroperoxide reductase subunit C, at 551,404 to 551,967 _RS02565 DZA65_RS02570: DZA65_RS02570 - alkyl hydroperoxide reductase subunit F, at 552,041 to 553,603 _RS02570 Position (kb) 551 552Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 550.460 kb on + strand, within DZA65_RS02560at 550.774 kb on + strand, within DZA65_RS02560at 550.775 kb on - strand, within DZA65_RS02560at 550.775 kb on - strand, within DZA65_RS02560at 550.805 kb on + strand, within DZA65_RS02560at 550.805 kb on + strand, within DZA65_RS02560at 550.805 kb on + strand, within DZA65_RS02560at 550.805 kb on + strand, within DZA65_RS02560at 550.805 kb on + strand, within DZA65_RS02560at 550.805 kb on + strand, within DZA65_RS02560at 550.806 kb on - strand, within DZA65_RS02560at 550.806 kb on - strand, within DZA65_RS02560at 551.298 kb on - strandat 551.302 kb on - strandat 551.319 kb on + strandat 551.341 kb on + strandat 551.341 kb on + strandat 551.341 kb on + strandat 551.341 kb on + strandat 551.341 kb on + strandat 551.341 kb on + strandat 551.342 kb on - strandat 551.342 kb on - strandat 551.342 kb on - strandat 551.342 kb on - strandat 551.342 kb on - strandat 551.342 kb on - strandat 551.342 kb on - strandat 551.361 kb on + strandat 551.361 kb on + strandat 551.361 kb on + strandat 551.361 kb on + strandat 551.361 kb on + strandat 551.362 kb on - strandat 551.362 kb on - strandat 551.362 kb on - strandat 551.362 kb on - strandat 551.362 kb on - strandat 551.362 kb on - strandat 551.362 kb on - strandat 551.382 kb on + strandat 551.382 kb on + strandat 551.382 kb on + strandat 551.382 kb on + strandat 551.383 kb on - strandat 551.383 kb on - strandat 551.383 kb on - strandat 551.383 kb on - strandat 551.383 kb on - strandat 551.389 kb on + strandat 551.389 kb on + strandat 551.389 kb on + strandat 551.389 kb on + strandat 551.389 kb on + strandat 551.389 kb on + strandat 551.389 kb on + strandat 551.389 kb on + strandat 551.390 kb on - strandat 551.390 kb on - strandat 551.390 kb on - strandat 551.390 kb on - strandat 551.390 kb on - strandat 551.390 kb on - strandat 551.418 kb on + strandat 551.419 kb on - strandat 551.419 kb on - strandat 551.421 kb on + strandat 551.518 kb on + strand, within DZA65_RS02565at 551.532 kb on + strand, within DZA65_RS02565at 551.533 kb on - strand, within DZA65_RS02565at 551.575 kb on + strand, within DZA65_RS02565at 551.575 kb on + strand, within DZA65_RS02565at 551.575 kb on + strand, within DZA65_RS02565at 551.576 kb on - strand, within DZA65_RS02565at 551.601 kb on - strand, within DZA65_RS02565at 551.601 kb on - strand, within DZA65_RS02565at 551.608 kb on + strand, within DZA65_RS02565at 551.608 kb on + strand, within DZA65_RS02565at 551.608 kb on + strand, within DZA65_RS02565at 551.609 kb on - strand, within DZA65_RS02565at 551.609 kb on - strand, within DZA65_RS02565at 551.609 kb on - strand, within DZA65_RS02565at 551.609 kb on - strand, within DZA65_RS02565at 551.609 kb on - strand, within DZA65_RS02565at 551.609 kb on - strand, within DZA65_RS02565at 551.609 kb on - strand, within DZA65_RS02565at 551.634 kb on + strand, within DZA65_RS02565at 551.634 kb on + strand, within DZA65_RS02565at 551.634 kb on + strand, within DZA65_RS02565at 551.634 kb on + strand, within DZA65_RS02565at 551.635 kb on - strand, within DZA65_RS02565at 551.635 kb on - strand, within DZA65_RS02565at 551.684 kb on - strand, within DZA65_RS02565at 551.684 kb on - strand, within DZA65_RS02565at 551.684 kb on - strand, within DZA65_RS02565at 551.872 kb on + strand, within DZA65_RS02565at 551.872 kb on + strand, within DZA65_RS02565at 551.872 kb on + strand, within DZA65_RS02565at 551.872 kb on + strand, within DZA65_RS02565at 551.873 kb on - strand, within DZA65_RS02565at 551.873 kb on - strand, within DZA65_RS02565at 551.873 kb on - strand, within DZA65_RS02565at 551.873 kb on - strand, within DZA65_RS02565at 551.873 kb on - strand, within DZA65_RS02565at 551.873 kb on - strand, within DZA65_RS02565at 552.035 kb on + strandat 552.040 kb on + strandat 552.040 kb on + strandat 552.040 kb on + strandat 552.041 kb on - strandat 552.041 kb on - strandat 552.041 kb on - strandat 552.041 kb on - strandat 552.052 kb on + strandat 552.077 kb on + strandat 552.077 kb on + strandat 552.077 kb on + strandat 552.078 kb on - strandat 552.109 kb on - strandat 552.109 kb on - strandat 552.213 kb on + strandat 552.223 kb on + strand, within DZA65_RS02570at 552.223 kb on + strand, within DZA65_RS02570at 552.302 kb on - strand, within DZA65_RS02570at 552.363 kb on + strand, within DZA65_RS02570at 552.363 kb on + strand, within DZA65_RS02570at 552.410 kb on + strand, within DZA65_RS02570at 552.410 kb on + strand, within DZA65_RS02570at 552.410 kb on + strand, within DZA65_RS02570at 552.410 kb on + strand, within DZA65_RS02570at 552.410 kb on + strand, within DZA65_RS02570at 552.411 kb on - strand, within DZA65_RS02570at 552.411 kb on - strand, within DZA65_RS02570at 552.413 kb on + strand, within DZA65_RS02570at 552.413 kb on + strand, within DZA65_RS02570at 552.414 kb on - strand, within DZA65_RS02570at 552.414 kb on - strand, within DZA65_RS02570at 552.462 kb on + strand, within DZA65_RS02570at 552.462 kb on + strand, within DZA65_RS02570at 552.463 kb on - strand, within DZA65_RS02570at 552.463 kb on - strand, within DZA65_RS02570at 552.541 kb on + strand, within DZA65_RS02570at 552.541 kb on + strand, within DZA65_RS02570at 552.624 kb on + strand, within DZA65_RS02570at 552.624 kb on + strand, within DZA65_RS02570at 552.625 kb on - strand, within DZA65_RS02570at 552.625 kb on - strand, within DZA65_RS02570at 552.625 kb on - strand, within DZA65_RS02570at 552.677 kb on + strand, within DZA65_RS02570at 552.677 kb on + strand, within DZA65_RS02570at 552.678 kb on - strand, within DZA65_RS02570at 552.678 kb on - strand, within DZA65_RS02570at 552.678 kb on - strand, within DZA65_RS02570at 552.678 kb on - strand, within DZA65_RS02570at 552.678 kb on - strand, within DZA65_RS02570at 552.678 kb on - strand, within DZA65_RS02570at 552.728 kb on + strand, within DZA65_RS02570at 552.729 kb on - strand, within DZA65_RS02570at 552.813 kb on - strand, within DZA65_RS02570at 552.813 kb on - strand, within DZA65_RS02570at 552.878 kb on + strand, within DZA65_RS02570at 552.878 kb on + strand, within DZA65_RS02570at 552.878 kb on + strand, within DZA65_RS02570at 552.879 kb on - strand, within DZA65_RS02570at 552.879 kb on - strand, within DZA65_RS02570

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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550,460 + DZA65_RS02560 0.16 -0.3
550,774 + DZA65_RS02560 0.47 -0.4
550,775 - DZA65_RS02560 0.47 +0.6
550,775 - DZA65_RS02560 0.47 +0.4
550,805 + DZA65_RS02560 0.50 -0.2
550,805 + DZA65_RS02560 0.50 -1.2
550,805 + DZA65_RS02560 0.50 +0.4
550,805 + DZA65_RS02560 0.50 -0.0
550,805 + DZA65_RS02560 0.50 -0.0
550,805 + DZA65_RS02560 0.50 -1.1
550,806 - DZA65_RS02560 0.51 +0.4
550,806 - DZA65_RS02560 0.51 -0.0
551,298 - +0.1
551,302 - +0.1
551,319 + +0.5
551,341 + -0.9
551,341 + +0.8
551,341 + -0.4
551,341 + -0.9
551,341 + -0.8
551,341 + +0.1
551,342 - -1.9
551,342 - +1.1
551,342 - +0.5
551,342 - -0.3
551,342 - +0.0
551,342 - -1.1
551,342 - -1.6
551,361 + +1.1
551,361 + -0.2
551,361 + -0.9
551,361 + +0.0
551,361 + +0.6
551,362 - -1.2
551,362 - +0.0
551,362 - -0.6
551,362 - -1.6
551,362 - -0.0
551,362 - -0.4
551,362 - +0.9
551,382 + +0.2
551,382 + +0.1
551,382 + +0.3
551,382 + -0.3
551,383 - +0.6
551,383 - -0.6
551,383 - -0.3
551,383 - -0.2
551,383 - +0.2
551,389 + -0.7
551,389 + -0.4
551,389 + -1.4
551,389 + +1.1
551,389 + -1.7
551,389 + -0.1
551,389 + +0.3
551,389 + -0.6
551,390 - -1.2
551,390 - +0.0
551,390 - -0.7
551,390 - +0.4
551,390 - -0.1
551,390 - -2.8
551,418 + +0.6
551,419 - +1.5
551,419 - +0.5
551,421 + +0.4
551,518 + DZA65_RS02565 0.20 -0.1
551,532 + DZA65_RS02565 0.23 -3.4
551,533 - DZA65_RS02565 0.23 -0.9
551,575 + DZA65_RS02565 0.30 -0.6
551,575 + DZA65_RS02565 0.30 +0.3
551,575 + DZA65_RS02565 0.30 +0.1
551,576 - DZA65_RS02565 0.30 -2.0
551,601 - DZA65_RS02565 0.35 -0.7
551,601 - DZA65_RS02565 0.35 +0.5
551,608 + DZA65_RS02565 0.36 -1.2
551,608 + DZA65_RS02565 0.36 -0.7
551,608 + DZA65_RS02565 0.36 -1.6
551,609 - DZA65_RS02565 0.36 -1.0
551,609 - DZA65_RS02565 0.36 -0.0
551,609 - DZA65_RS02565 0.36 -0.4
551,609 - DZA65_RS02565 0.36 -0.2
551,609 - DZA65_RS02565 0.36 -0.4
551,609 - DZA65_RS02565 0.36 -1.5
551,609 - DZA65_RS02565 0.36 +0.6
551,634 + DZA65_RS02565 0.41 -0.4
551,634 + DZA65_RS02565 0.41 +0.5
551,634 + DZA65_RS02565 0.41 +0.9
551,634 + DZA65_RS02565 0.41 -2.7
551,635 - DZA65_RS02565 0.41 -1.6
551,635 - DZA65_RS02565 0.41 -0.2
551,684 - DZA65_RS02565 0.50 +0.3
551,684 - DZA65_RS02565 0.50 +1.1
551,684 - DZA65_RS02565 0.50 -1.3
551,872 + DZA65_RS02565 0.83 +0.9
551,872 + DZA65_RS02565 0.83 -0.9
551,872 + DZA65_RS02565 0.83 -1.1
551,872 + DZA65_RS02565 0.83 -0.7
551,873 - DZA65_RS02565 0.83 -0.4
551,873 - DZA65_RS02565 0.83 -0.5
551,873 - DZA65_RS02565 0.83 -0.8
551,873 - DZA65_RS02565 0.83 -0.2
551,873 - DZA65_RS02565 0.83 -1.0
551,873 - DZA65_RS02565 0.83 +0.3
552,035 + +0.2
552,040 + -0.4
552,040 + +0.1
552,040 + +2.5
552,041 - +0.0
552,041 - -0.1
552,041 - -0.6
552,041 - -0.4
552,052 + -0.2
552,077 + -0.2
552,077 + -1.8
552,077 + -0.2
552,078 - -1.4
552,109 - +0.9
552,109 - +1.0
552,213 + +0.1
552,223 + DZA65_RS02570 0.12 -0.2
552,223 + DZA65_RS02570 0.12 +0.6
552,302 - DZA65_RS02570 0.17 -0.9
552,363 + DZA65_RS02570 0.21 +0.8
552,363 + DZA65_RS02570 0.21 +0.7
552,410 + DZA65_RS02570 0.24 +0.5
552,410 + DZA65_RS02570 0.24 -0.5
552,410 + DZA65_RS02570 0.24 +1.8
552,410 + DZA65_RS02570 0.24 -0.4
552,410 + DZA65_RS02570 0.24 +1.1
552,411 - DZA65_RS02570 0.24 +1.1
552,411 - DZA65_RS02570 0.24 -1.7
552,413 + DZA65_RS02570 0.24 +0.1
552,413 + DZA65_RS02570 0.24 -0.5
552,414 - DZA65_RS02570 0.24 -0.5
552,414 - DZA65_RS02570 0.24 +0.2
552,462 + DZA65_RS02570 0.27 -0.9
552,462 + DZA65_RS02570 0.27 +0.1
552,463 - DZA65_RS02570 0.27 -1.2
552,463 - DZA65_RS02570 0.27 +0.1
552,541 + DZA65_RS02570 0.32 -0.2
552,541 + DZA65_RS02570 0.32 +0.3
552,624 + DZA65_RS02570 0.37 +0.6
552,624 + DZA65_RS02570 0.37 -0.1
552,625 - DZA65_RS02570 0.37 -0.6
552,625 - DZA65_RS02570 0.37 -0.2
552,625 - DZA65_RS02570 0.37 -0.3
552,677 + DZA65_RS02570 0.41 -1.2
552,677 + DZA65_RS02570 0.41 +0.6
552,678 - DZA65_RS02570 0.41 -0.4
552,678 - DZA65_RS02570 0.41 +0.4
552,678 - DZA65_RS02570 0.41 -1.6
552,678 - DZA65_RS02570 0.41 +0.5
552,678 - DZA65_RS02570 0.41 +0.4
552,678 - DZA65_RS02570 0.41 +0.3
552,728 + DZA65_RS02570 0.44 +0.9
552,729 - DZA65_RS02570 0.44 -1.9
552,813 - DZA65_RS02570 0.49 +0.1
552,813 - DZA65_RS02570 0.49 -1.3
552,878 + DZA65_RS02570 0.54 -0.2
552,878 + DZA65_RS02570 0.54 -0.9
552,878 + DZA65_RS02570 0.54 -1.2
552,879 - DZA65_RS02570 0.54 +0.1
552,879 - DZA65_RS02570 0.54 -0.6

Or see this region's nucleotide sequence