Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01915

Experiment: PDB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDZA65_RS01905 and DZA65_RS01910 are separated by 102 nucleotidesDZA65_RS01910 and DZA65_RS01915 are separated by 54 nucleotidesDZA65_RS01915 and DZA65_RS01920 overlap by 4 nucleotidesDZA65_RS01920 and DZA65_RS01925 are separated by 124 nucleotides DZA65_RS01905: DZA65_RS01905 - ABC transporter ATP-binding protein, at 419,301 to 420,896 _RS01905 DZA65_RS01910: DZA65_RS01910 - Hcp family type VI secretion system effector, at 420,999 to 421,478 _RS01910 DZA65_RS01915: DZA65_RS01915 - hypothetical protein, at 421,533 to 422,132 _RS01915 DZA65_RS01920: DZA65_RS01920 - DUF1311 domain-containing protein, at 422,129 to 422,509 _RS01920 DZA65_RS01925: DZA65_RS01925 - proteasome-type protease, at 422,634 to 423,368 _RS01925 Position (kb) 421 422 423Strain fitness (log2 ratio) -2 -1 0 1 2at 420.560 kb on - strand, within DZA65_RS01905at 420.597 kb on - strand, within DZA65_RS01905at 420.693 kb on + strand, within DZA65_RS01905at 420.693 kb on + strand, within DZA65_RS01905at 420.694 kb on - strand, within DZA65_RS01905at 420.694 kb on - strand, within DZA65_RS01905at 420.716 kb on - strand, within DZA65_RS01905at 420.820 kb on - strandat 420.894 kb on + strandat 420.895 kb on - strandat 420.925 kb on + strandat 420.925 kb on + strandat 420.925 kb on + strandat 420.925 kb on + strandat 420.925 kb on + strandat 420.925 kb on + strandat 420.925 kb on + strandat 420.925 kb on + strandat 420.926 kb on - strandat 420.926 kb on - strandat 420.926 kb on - strandat 420.926 kb on - strandat 420.926 kb on - strandat 420.927 kb on + strandat 420.927 kb on + strandat 420.927 kb on + strandat 420.927 kb on + strandat 420.927 kb on + strandat 420.928 kb on - strandat 420.928 kb on - strandat 420.928 kb on - strandat 420.928 kb on - strandat 420.928 kb on - strandat 420.928 kb on - strandat 420.928 kb on - strandat 420.928 kb on - strandat 420.939 kb on + strandat 420.940 kb on - strandat 420.968 kb on - strandat 420.973 kb on + strandat 420.973 kb on + strandat 420.977 kb on + strandat 420.977 kb on + strandat 420.981 kb on + strandat 420.998 kb on + strandat 420.998 kb on + strandat 421.011 kb on - strandat 421.011 kb on - strandat 421.114 kb on + strand, within DZA65_RS01910at 421.115 kb on - strand, within DZA65_RS01910at 421.115 kb on - strand, within DZA65_RS01910at 421.115 kb on - strand, within DZA65_RS01910at 421.121 kb on - strand, within DZA65_RS01910at 421.139 kb on + strand, within DZA65_RS01910at 421.139 kb on + strand, within DZA65_RS01910at 421.140 kb on - strand, within DZA65_RS01910at 421.217 kb on + strand, within DZA65_RS01910at 421.218 kb on - strand, within DZA65_RS01910at 421.223 kb on + strand, within DZA65_RS01910at 421.226 kb on + strand, within DZA65_RS01910at 421.250 kb on + strand, within DZA65_RS01910at 421.358 kb on + strand, within DZA65_RS01910at 421.384 kb on - strand, within DZA65_RS01910at 421.395 kb on - strand, within DZA65_RS01910at 421.449 kb on + strandat 421.450 kb on - strandat 421.451 kb on + strandat 421.452 kb on - strandat 421.454 kb on + strandat 421.454 kb on + strandat 421.454 kb on + strandat 421.455 kb on - strandat 421.455 kb on - strandat 421.517 kb on + strandat 421.519 kb on + strandat 421.519 kb on + strandat 421.521 kb on + strandat 421.634 kb on + strand, within DZA65_RS01915at 421.634 kb on + strand, within DZA65_RS01915at 421.635 kb on - strand, within DZA65_RS01915at 421.635 kb on - strand, within DZA65_RS01915at 421.710 kb on + strand, within DZA65_RS01915at 421.710 kb on + strand, within DZA65_RS01915at 421.710 kb on + strand, within DZA65_RS01915at 421.710 kb on + strand, within DZA65_RS01915at 421.710 kb on + strand, within DZA65_RS01915at 421.710 kb on + strand, within DZA65_RS01915at 421.710 kb on + strand, within DZA65_RS01915at 421.711 kb on - strand, within DZA65_RS01915at 421.711 kb on - strand, within DZA65_RS01915at 421.711 kb on - strand, within DZA65_RS01915at 421.711 kb on - strand, within DZA65_RS01915at 421.711 kb on - strand, within DZA65_RS01915at 421.711 kb on - strand, within DZA65_RS01915at 421.713 kb on + strand, within DZA65_RS01915at 421.714 kb on - strand, within DZA65_RS01915at 421.714 kb on - strand, within DZA65_RS01915at 421.745 kb on + strand, within DZA65_RS01915at 421.821 kb on - strand, within DZA65_RS01915at 421.821 kb on - strand, within DZA65_RS01915at 421.821 kb on - strand, within DZA65_RS01915at 421.821 kb on - strand, within DZA65_RS01915at 421.854 kb on - strand, within DZA65_RS01915at 421.880 kb on - strand, within DZA65_RS01915at 421.895 kb on + strand, within DZA65_RS01915at 421.917 kb on - strand, within DZA65_RS01915at 421.969 kb on + strand, within DZA65_RS01915at 422.219 kb on + strand, within DZA65_RS01920at 422.221 kb on + strand, within DZA65_RS01920at 422.445 kb on - strand, within DZA65_RS01920at 422.455 kb on + strand, within DZA65_RS01920at 422.456 kb on - strand, within DZA65_RS01920at 422.456 kb on - strand, within DZA65_RS01920at 422.462 kb on - strand, within DZA65_RS01920at 422.499 kb on - strandat 422.516 kb on - strandat 422.523 kb on + strandat 422.524 kb on - strandat 422.526 kb on - strandat 422.540 kb on + strandat 422.541 kb on - strandat 422.572 kb on + strandat 422.611 kb on - strandat 422.611 kb on - strandat 422.673 kb on - strandat 422.716 kb on + strand, within DZA65_RS01925at 422.716 kb on + strand, within DZA65_RS01925at 422.716 kb on + strand, within DZA65_RS01925at 422.716 kb on + strand, within DZA65_RS01925at 422.716 kb on + strand, within DZA65_RS01925at 422.716 kb on + strand, within DZA65_RS01925at 422.717 kb on - strand, within DZA65_RS01925at 422.717 kb on - strand, within DZA65_RS01925at 422.717 kb on - strand, within DZA65_RS01925at 422.773 kb on + strand, within DZA65_RS01925at 422.773 kb on + strand, within DZA65_RS01925at 422.773 kb on + strand, within DZA65_RS01925at 422.774 kb on - strand, within DZA65_RS01925at 422.908 kb on + strand, within DZA65_RS01925at 422.908 kb on + strand, within DZA65_RS01925at 422.908 kb on + strand, within DZA65_RS01925at 422.922 kb on + strand, within DZA65_RS01925at 422.933 kb on - strand, within DZA65_RS01925at 422.933 kb on - strand, within DZA65_RS01925at 422.974 kb on + strand, within DZA65_RS01925at 422.974 kb on + strand, within DZA65_RS01925at 422.974 kb on + strand, within DZA65_RS01925at 422.974 kb on + strand, within DZA65_RS01925at 422.975 kb on - strand, within DZA65_RS01925at 423.071 kb on + strand, within DZA65_RS01925at 423.072 kb on - strand, within DZA65_RS01925at 423.072 kb on - strand, within DZA65_RS01925at 423.094 kb on - strand, within DZA65_RS01925at 423.124 kb on + strand, within DZA65_RS01925at 423.124 kb on + strand, within DZA65_RS01925at 423.125 kb on - strand, within DZA65_RS01925

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PDB
remove
420,560 - DZA65_RS01905 0.79 -0.4
420,597 - DZA65_RS01905 0.81 +1.5
420,693 + DZA65_RS01905 0.87 +0.9
420,693 + DZA65_RS01905 0.87 -1.3
420,694 - DZA65_RS01905 0.87 +0.5
420,694 - DZA65_RS01905 0.87 -0.8
420,716 - DZA65_RS01905 0.89 -1.0
420,820 - +0.0
420,894 + +1.2
420,895 - +0.1
420,925 + -0.5
420,925 + -0.0
420,925 + -0.8
420,925 + +0.4
420,925 + -0.6
420,925 + -0.1
420,925 + +1.2
420,925 + -1.6
420,926 - -0.3
420,926 - -0.9
420,926 - -0.5
420,926 - -0.2
420,926 - -0.6
420,927 + -0.3
420,927 + -0.7
420,927 + -0.7
420,927 + -2.0
420,927 + +1.2
420,928 - +0.5
420,928 - -1.0
420,928 - -0.3
420,928 - -1.0
420,928 - +0.1
420,928 - -1.6
420,928 - -0.8
420,928 - +0.2
420,939 + -0.5
420,940 - -1.6
420,968 - -0.5
420,973 + +0.7
420,973 + -0.5
420,977 + -0.0
420,977 + +0.8
420,981 + -0.1
420,998 + +0.1
420,998 + +0.0
421,011 - +0.3
421,011 - -0.5
421,114 + DZA65_RS01910 0.24 +0.2
421,115 - DZA65_RS01910 0.24 -0.8
421,115 - DZA65_RS01910 0.24 +0.8
421,115 - DZA65_RS01910 0.24 -0.0
421,121 - DZA65_RS01910 0.25 -0.2
421,139 + DZA65_RS01910 0.29 +0.3
421,139 + DZA65_RS01910 0.29 +0.9
421,140 - DZA65_RS01910 0.29 -1.0
421,217 + DZA65_RS01910 0.45 -0.1
421,218 - DZA65_RS01910 0.46 +0.4
421,223 + DZA65_RS01910 0.47 -0.0
421,226 + DZA65_RS01910 0.47 -1.5
421,250 + DZA65_RS01910 0.52 -0.9
421,358 + DZA65_RS01910 0.75 +1.2
421,384 - DZA65_RS01910 0.80 +0.8
421,395 - DZA65_RS01910 0.82 +2.0
421,449 + -0.4
421,450 - -0.5
421,451 + +0.1
421,452 - -0.8
421,454 + +0.0
421,454 + -0.5
421,454 + -0.4
421,455 - +0.1
421,455 - +0.3
421,517 + -0.3
421,519 + -0.9
421,519 + -0.2
421,521 + +0.3
421,634 + DZA65_RS01915 0.17 +0.6
421,634 + DZA65_RS01915 0.17 -1.1
421,635 - DZA65_RS01915 0.17 -1.1
421,635 - DZA65_RS01915 0.17 -0.0
421,710 + DZA65_RS01915 0.29 -0.0
421,710 + DZA65_RS01915 0.29 -0.3
421,710 + DZA65_RS01915 0.29 -0.2
421,710 + DZA65_RS01915 0.29 +0.8
421,710 + DZA65_RS01915 0.29 +0.2
421,710 + DZA65_RS01915 0.29 -0.3
421,710 + DZA65_RS01915 0.29 +0.8
421,711 - DZA65_RS01915 0.30 +0.0
421,711 - DZA65_RS01915 0.30 +1.5
421,711 - DZA65_RS01915 0.30 -1.1
421,711 - DZA65_RS01915 0.30 +1.0
421,711 - DZA65_RS01915 0.30 +0.9
421,711 - DZA65_RS01915 0.30 -0.4
421,713 + DZA65_RS01915 0.30 +1.0
421,714 - DZA65_RS01915 0.30 -1.5
421,714 - DZA65_RS01915 0.30 -0.2
421,745 + DZA65_RS01915 0.35 +0.1
421,821 - DZA65_RS01915 0.48 -1.0
421,821 - DZA65_RS01915 0.48 +0.2
421,821 - DZA65_RS01915 0.48 -0.4
421,821 - DZA65_RS01915 0.48 -0.0
421,854 - DZA65_RS01915 0.54 +0.5
421,880 - DZA65_RS01915 0.58 +0.2
421,895 + DZA65_RS01915 0.60 -0.4
421,917 - DZA65_RS01915 0.64 +1.4
421,969 + DZA65_RS01915 0.73 -0.4
422,219 + DZA65_RS01920 0.24 +0.2
422,221 + DZA65_RS01920 0.24 -0.3
422,445 - DZA65_RS01920 0.83 -2.0
422,455 + DZA65_RS01920 0.86 -1.1
422,456 - DZA65_RS01920 0.86 -0.4
422,456 - DZA65_RS01920 0.86 +0.5
422,462 - DZA65_RS01920 0.87 -2.3
422,499 - -0.7
422,516 - +1.2
422,523 + +0.2
422,524 - -0.0
422,526 - -2.4
422,540 + +0.0
422,541 - -0.3
422,572 + +0.0
422,611 - -1.0
422,611 - +0.8
422,673 - -0.4
422,716 + DZA65_RS01925 0.11 -0.8
422,716 + DZA65_RS01925 0.11 +0.2
422,716 + DZA65_RS01925 0.11 +0.0
422,716 + DZA65_RS01925 0.11 -0.1
422,716 + DZA65_RS01925 0.11 -0.4
422,716 + DZA65_RS01925 0.11 -1.5
422,717 - DZA65_RS01925 0.11 +0.1
422,717 - DZA65_RS01925 0.11 -0.4
422,717 - DZA65_RS01925 0.11 +0.1
422,773 + DZA65_RS01925 0.19 -0.5
422,773 + DZA65_RS01925 0.19 -0.6
422,773 + DZA65_RS01925 0.19 -1.4
422,774 - DZA65_RS01925 0.19 -2.3
422,908 + DZA65_RS01925 0.37 -0.5
422,908 + DZA65_RS01925 0.37 -1.2
422,908 + DZA65_RS01925 0.37 -0.5
422,922 + DZA65_RS01925 0.39 +0.4
422,933 - DZA65_RS01925 0.41 -0.9
422,933 - DZA65_RS01925 0.41 -1.5
422,974 + DZA65_RS01925 0.46 -0.4
422,974 + DZA65_RS01925 0.46 -0.3
422,974 + DZA65_RS01925 0.46 -0.2
422,974 + DZA65_RS01925 0.46 -0.8
422,975 - DZA65_RS01925 0.46 +0.2
423,071 + DZA65_RS01925 0.59 -0.1
423,072 - DZA65_RS01925 0.60 -1.2
423,072 - DZA65_RS01925 0.60 -0.1
423,094 - DZA65_RS01925 0.63 +0.2
423,124 + DZA65_RS01925 0.67 +0.1
423,124 + DZA65_RS01925 0.67 -0.6
423,125 - DZA65_RS01925 0.67 -0.1

Or see this region's nucleotide sequence