Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00415 and DZA65_RS00420 are separated by 4 nucleotides DZA65_RS00420 and DZA65_RS00425 are separated by 204 nucleotides
DZA65_RS00415: DZA65_RS00415 - ABC transporter ATP-binding protein, at 100,066 to 100,773
_RS00415
DZA65_RS00420: DZA65_RS00420 - FtsX-like permease family protein, at 100,778 to 103,213
_RS00420
DZA65_RS00425: DZA65_RS00425 - sigma-54-dependent Fis family transcriptional regulator, at 103,418 to 104,821
_RS00425
Position (kb) 100
101
102
103
104 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 99.802 kb on + strand at 99.826 kb on + strand at 99.827 kb on - strand at 99.827 kb on - strand at 99.868 kb on + strand at 99.868 kb on + strand at 99.868 kb on + strand at 99.868 kb on + strand at 99.868 kb on + strand at 99.868 kb on + strand at 99.869 kb on - strand at 99.942 kb on + strand at 99.942 kb on + strand at 99.942 kb on + strand at 99.942 kb on + strand at 99.942 kb on + strand at 99.943 kb on - strand at 99.943 kb on - strand at 99.943 kb on - strand at 99.943 kb on - strand at 99.958 kb on + strand at 99.959 kb on - strand at 99.959 kb on - strand at 99.987 kb on + strand at 99.987 kb on + strand at 100.011 kb on + strand at 100.011 kb on + strand at 100.011 kb on + strand at 100.011 kb on + strand at 100.012 kb on - strand at 100.012 kb on - strand at 100.012 kb on - strand at 100.043 kb on + strand at 100.043 kb on + strand at 100.043 kb on + strand at 100.043 kb on + strand at 100.043 kb on + strand at 100.043 kb on + strand at 100.044 kb on - strand at 100.044 kb on - strand at 100.044 kb on - strand at 100.044 kb on - strand at 100.047 kb on + strand at 100.047 kb on + strand at 100.047 kb on + strand at 100.047 kb on + strand at 100.047 kb on + strand at 100.047 kb on + strand at 100.047 kb on + strand at 100.048 kb on - strand at 100.048 kb on - strand at 100.048 kb on - strand at 100.048 kb on - strand at 100.049 kb on + strand at 100.049 kb on + strand at 100.049 kb on + strand at 100.049 kb on + strand at 100.049 kb on + strand at 100.050 kb on - strand at 100.050 kb on - strand at 100.050 kb on - strand at 100.050 kb on - strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.090 kb on - strand at 100.099 kb on - strand at 100.138 kb on - strand, within DZA65_RS00415 at 100.145 kb on + strand, within DZA65_RS00415 at 100.146 kb on - strand, within DZA65_RS00415 at 100.146 kb on - strand, within DZA65_RS00415 at 100.146 kb on - strand, within DZA65_RS00415 at 100.155 kb on + strand at 100.155 kb on + strand, within DZA65_RS00415 at 100.156 kb on - strand, within DZA65_RS00415 at 100.156 kb on - strand, within DZA65_RS00415 at 100.156 kb on - strand, within DZA65_RS00415 at 100.156 kb on - strand, within DZA65_RS00415 at 100.171 kb on + strand, within DZA65_RS00415 at 100.171 kb on + strand, within DZA65_RS00415 at 100.171 kb on + strand, within DZA65_RS00415 at 100.172 kb on - strand, within DZA65_RS00415 at 100.172 kb on - strand, within DZA65_RS00415 at 100.172 kb on - strand, within DZA65_RS00415 at 100.172 kb on - strand, within DZA65_RS00415 at 100.172 kb on - strand, within DZA65_RS00415 at 100.172 kb on - strand, within DZA65_RS00415 at 100.172 kb on - strand, within DZA65_RS00415 at 100.280 kb on + strand, within DZA65_RS00415 at 100.280 kb on + strand, within DZA65_RS00415 at 100.280 kb on + strand, within DZA65_RS00415 at 100.281 kb on - strand, within DZA65_RS00415 at 100.281 kb on - strand, within DZA65_RS00415 at 100.281 kb on - strand, within DZA65_RS00415 at 100.281 kb on - strand, within DZA65_RS00415 at 100.281 kb on - strand, within DZA65_RS00415 at 100.281 kb on - strand, within DZA65_RS00415 at 100.281 kb on - strand, within DZA65_RS00415 at 100.335 kb on + strand, within DZA65_RS00415 at 100.336 kb on - strand, within DZA65_RS00415 at 100.336 kb on - strand, within DZA65_RS00415 at 100.358 kb on + strand, within DZA65_RS00415 at 100.359 kb on - strand, within DZA65_RS00415 at 100.385 kb on + strand, within DZA65_RS00415 at 100.385 kb on + strand, within DZA65_RS00415 at 100.385 kb on + strand, within DZA65_RS00415 at 100.402 kb on + strand, within DZA65_RS00415 at 100.402 kb on + strand, within DZA65_RS00415 at 100.402 kb on + strand, within DZA65_RS00415 at 100.402 kb on + strand, within DZA65_RS00415 at 100.403 kb on - strand, within DZA65_RS00415 at 100.490 kb on - strand, within DZA65_RS00415 at 100.623 kb on + strand, within DZA65_RS00415 at 100.623 kb on + strand, within DZA65_RS00415 at 100.623 kb on + strand, within DZA65_RS00415 at 100.623 kb on + strand, within DZA65_RS00415 at 100.623 kb on + strand, within DZA65_RS00415 at 100.623 kb on + strand, within DZA65_RS00415 at 100.624 kb on - strand, within DZA65_RS00415 at 100.624 kb on - strand, within DZA65_RS00415 at 100.786 kb on - strand at 100.887 kb on - strand at 100.887 kb on - strand at 100.893 kb on - strand at 100.893 kb on - strand at 100.893 kb on - strand at 101.018 kb on - strand at 101.108 kb on - strand, within DZA65_RS00420 at 101.112 kb on - strand at 101.138 kb on - strand, within DZA65_RS00420 at 101.138 kb on - strand, within DZA65_RS00420 at 101.138 kb on - strand, within DZA65_RS00420 at 101.148 kb on - strand, within DZA65_RS00420 at 101.212 kb on - strand, within DZA65_RS00420 at 101.269 kb on + strand, within DZA65_RS00420 at 101.275 kb on + strand, within DZA65_RS00420 at 101.310 kb on - strand, within DZA65_RS00420 at 101.310 kb on - strand, within DZA65_RS00420 at 101.310 kb on - strand, within DZA65_RS00420 at 101.430 kb on - strand, within DZA65_RS00420 at 101.430 kb on - strand, within DZA65_RS00420 at 101.430 kb on - strand, within DZA65_RS00420 at 101.881 kb on - strand, within DZA65_RS00420 at 101.885 kb on - strand, within DZA65_RS00420 at 101.885 kb on - strand, within DZA65_RS00420 at 101.989 kb on - strand, within DZA65_RS00420 at 102.086 kb on - strand, within DZA65_RS00420 at 102.089 kb on - strand, within DZA65_RS00420 at 102.161 kb on - strand, within DZA65_RS00420 at 102.427 kb on - strand, within DZA65_RS00420 at 102.427 kb on - strand, within DZA65_RS00420 at 102.482 kb on - strand, within DZA65_RS00420 at 102.507 kb on - strand, within DZA65_RS00420 at 102.531 kb on + strand, within DZA65_RS00420 at 102.576 kb on - strand, within DZA65_RS00420 at 102.603 kb on + strand, within DZA65_RS00420 at 102.604 kb on - strand, within DZA65_RS00420 at 102.604 kb on - strand, within DZA65_RS00420 at 102.647 kb on - strand, within DZA65_RS00420 at 102.647 kb on - strand, within DZA65_RS00420 at 102.647 kb on - strand, within DZA65_RS00420 at 102.679 kb on + strand, within DZA65_RS00420 at 102.689 kb on - strand, within DZA65_RS00420 at 102.698 kb on - strand, within DZA65_RS00420 at 102.698 kb on - strand, within DZA65_RS00420 at 102.749 kb on - strand, within DZA65_RS00420 at 102.749 kb on - strand, within DZA65_RS00420 at 102.933 kb on + strand, within DZA65_RS00420 at 102.934 kb on - strand, within DZA65_RS00420 at 102.972 kb on + strand at 102.972 kb on + strand at 102.979 kb on + strand at 102.979 kb on + strand at 102.980 kb on - strand at 102.980 kb on - strand at 102.980 kb on - strand at 102.980 kb on - strand at 102.980 kb on - strand at 102.980 kb on - strand at 103.063 kb on - strand at 103.097 kb on - strand at 103.117 kb on - strand at 103.201 kb on - strand at 103.201 kb on - strand at 103.205 kb on + strand at 103.206 kb on - strand at 103.212 kb on - strand at 103.228 kb on + strand at 103.228 kb on + strand at 103.228 kb on + strand at 103.229 kb on - strand at 103.229 kb on - strand at 103.269 kb on - strand at 103.308 kb on + strand at 103.308 kb on + strand at 103.308 kb on + strand at 103.308 kb on + strand at 103.308 kb on + strand at 103.309 kb on - strand at 103.309 kb on - strand at 103.309 kb on - strand at 103.309 kb on - strand at 103.309 kb on - strand at 103.309 kb on - strand at 103.309 kb on - strand at 103.309 kb on - strand at 103.309 kb on - strand at 103.309 kb on - strand at 103.309 kb on - strand at 103.312 kb on + strand at 103.312 kb on + strand at 103.313 kb on - strand at 103.313 kb on - strand at 103.313 kb on - strand at 103.313 kb on - strand at 103.313 kb on - strand at 103.334 kb on - strand at 103.393 kb on - strand at 103.408 kb on - strand at 103.408 kb on - strand at 103.408 kb on - strand at 103.435 kb on + strand at 103.435 kb on + strand at 103.435 kb on + strand at 103.435 kb on + strand at 103.435 kb on + strand at 103.435 kb on + strand at 103.436 kb on - strand at 103.436 kb on - strand at 103.436 kb on - strand at 103.462 kb on + strand at 103.463 kb on - strand at 103.463 kb on - strand at 103.485 kb on + strand at 103.485 kb on + strand at 103.485 kb on + strand at 103.485 kb on + strand at 103.485 kb on + strand at 103.485 kb on + strand at 103.485 kb on + strand at 103.486 kb on - strand at 103.486 kb on - strand at 103.486 kb on - strand at 103.486 kb on - strand at 103.486 kb on - strand at 103.496 kb on + strand at 103.503 kb on - strand at 103.583 kb on - strand, within DZA65_RS00425 at 103.589 kb on + strand, within DZA65_RS00425 at 103.590 kb on - strand, within DZA65_RS00425 at 103.590 kb on - strand, within DZA65_RS00425 at 103.590 kb on - strand, within DZA65_RS00425 at 103.590 kb on - strand, within DZA65_RS00425 at 103.590 kb on - strand, within DZA65_RS00425 at 103.600 kb on + strand, within DZA65_RS00425 at 103.641 kb on + strand, within DZA65_RS00425 at 103.641 kb on + strand, within DZA65_RS00425 at 103.642 kb on - strand, within DZA65_RS00425 at 103.642 kb on - strand, within DZA65_RS00425 at 103.642 kb on - strand, within DZA65_RS00425 at 103.642 kb on - strand, within DZA65_RS00425 at 103.642 kb on - strand, within DZA65_RS00425 at 103.642 kb on - strand, within DZA65_RS00425 at 103.642 kb on - strand, within DZA65_RS00425 at 103.642 kb on - strand, within DZA65_RS00425 at 103.649 kb on + strand, within DZA65_RS00425 at 103.658 kb on + strand, within DZA65_RS00425 at 103.659 kb on - strand, within DZA65_RS00425 at 103.738 kb on + strand, within DZA65_RS00425 at 103.738 kb on + strand, within DZA65_RS00425 at 103.739 kb on - strand, within DZA65_RS00425 at 103.739 kb on - strand, within DZA65_RS00425
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 99,802 + +1.3 99,826 + +1.3 99,827 - +0.6 99,827 - -1.4 99,868 + -1.0 99,868 + -0.2 99,868 + +1.4 99,868 + -0.3 99,868 + +0.2 99,868 + +0.2 99,869 - +0.0 99,942 + -0.0 99,942 + -2.0 99,942 + -1.2 99,942 + -1.0 99,942 + +0.9 99,943 - -1.5 99,943 - -0.9 99,943 - -0.4 99,943 - +2.3 99,958 + -1.2 99,959 - -0.3 99,959 - -0.5 99,987 + +0.2 99,987 + +0.1 100,011 + +0.1 100,011 + -0.3 100,011 + +1.5 100,011 + -1.7 100,012 - -1.2 100,012 - -0.7 100,012 - -1.7 100,043 + -0.2 100,043 + -0.1 100,043 + +1.7 100,043 + -0.7 100,043 + +0.2 100,043 + +0.1 100,044 - +0.6 100,044 - +0.7 100,044 - -0.2 100,044 - +0.7 100,047 + -1.0 100,047 + -0.6 100,047 + +0.4 100,047 + -0.5 100,047 + +0.3 100,047 + -0.9 100,047 + +0.9 100,048 - +0.9 100,048 - +0.0 100,048 - +0.1 100,048 - +0.7 100,049 + -0.5 100,049 + -0.0 100,049 + -0.1 100,049 + -0.6 100,049 + +0.1 100,050 - +0.6 100,050 - +0.3 100,050 - +0.9 100,050 - +0.4 100,089 + +0.3 100,089 + -1.4 100,090 - +0.5 100,099 - +0.7 100,138 - DZA65_RS00415 0.10 -0.1 100,145 + DZA65_RS00415 0.11 +1.1 100,146 - DZA65_RS00415 0.11 +0.1 100,146 - DZA65_RS00415 0.11 -0.3 100,146 - DZA65_RS00415 0.11 -1.0 100,155 + +1.6 100,155 + DZA65_RS00415 0.13 -0.7 100,156 - DZA65_RS00415 0.13 -0.2 100,156 - DZA65_RS00415 0.13 +0.1 100,156 - DZA65_RS00415 0.13 +1.1 100,156 - DZA65_RS00415 0.13 -0.2 100,171 + DZA65_RS00415 0.15 -1.0 100,171 + DZA65_RS00415 0.15 +0.8 100,171 + DZA65_RS00415 0.15 +0.2 100,172 - DZA65_RS00415 0.15 +0.7 100,172 - DZA65_RS00415 0.15 +0.6 100,172 - DZA65_RS00415 0.15 +2.0 100,172 - DZA65_RS00415 0.15 +0.1 100,172 - DZA65_RS00415 0.15 +0.1 100,172 - DZA65_RS00415 0.15 -0.2 100,172 - DZA65_RS00415 0.15 -2.0 100,280 + DZA65_RS00415 0.30 +0.1 100,280 + DZA65_RS00415 0.30 +0.8 100,280 + DZA65_RS00415 0.30 +0.3 100,281 - DZA65_RS00415 0.30 +0.5 100,281 - DZA65_RS00415 0.30 +0.8 100,281 - DZA65_RS00415 0.30 -0.1 100,281 - DZA65_RS00415 0.30 -0.5 100,281 - DZA65_RS00415 0.30 -0.5 100,281 - DZA65_RS00415 0.30 +0.7 100,281 - DZA65_RS00415 0.30 +0.5 100,335 + DZA65_RS00415 0.38 +0.5 100,336 - DZA65_RS00415 0.38 -0.7 100,336 - DZA65_RS00415 0.38 +0.6 100,358 + DZA65_RS00415 0.41 -0.4 100,359 - DZA65_RS00415 0.41 +0.5 100,385 + DZA65_RS00415 0.45 -0.1 100,385 + DZA65_RS00415 0.45 -1.0 100,385 + DZA65_RS00415 0.45 -1.3 100,402 + DZA65_RS00415 0.47 +0.2 100,402 + DZA65_RS00415 0.47 +2.3 100,402 + DZA65_RS00415 0.47 -0.4 100,402 + DZA65_RS00415 0.47 -0.2 100,403 - DZA65_RS00415 0.48 -1.2 100,490 - DZA65_RS00415 0.60 +0.6 100,623 + DZA65_RS00415 0.79 -1.0 100,623 + DZA65_RS00415 0.79 +0.8 100,623 + DZA65_RS00415 0.79 -0.3 100,623 + DZA65_RS00415 0.79 +0.6 100,623 + DZA65_RS00415 0.79 +0.2 100,623 + DZA65_RS00415 0.79 +0.4 100,624 - DZA65_RS00415 0.79 +0.3 100,624 - DZA65_RS00415 0.79 +0.3 100,786 - -1.3 100,887 - -0.7 100,887 - +0.3 100,893 - -0.2 100,893 - -0.9 100,893 - -0.6 101,018 - -1.6 101,108 - DZA65_RS00420 0.14 +0.6 101,112 - -0.5 101,138 - DZA65_RS00420 0.15 -0.7 101,138 - DZA65_RS00420 0.15 -1.1 101,138 - DZA65_RS00420 0.15 -0.9 101,148 - DZA65_RS00420 0.15 -0.6 101,212 - DZA65_RS00420 0.18 -0.9 101,269 + DZA65_RS00420 0.20 +0.9 101,275 + DZA65_RS00420 0.20 -1.0 101,310 - DZA65_RS00420 0.22 -0.3 101,310 - DZA65_RS00420 0.22 -0.9 101,310 - DZA65_RS00420 0.22 -1.5 101,430 - DZA65_RS00420 0.27 -0.3 101,430 - DZA65_RS00420 0.27 -0.9 101,430 - DZA65_RS00420 0.27 +0.3 101,881 - DZA65_RS00420 0.45 -0.7 101,885 - DZA65_RS00420 0.45 -2.3 101,885 - DZA65_RS00420 0.45 -0.0 101,989 - DZA65_RS00420 0.50 -0.6 102,086 - DZA65_RS00420 0.54 +0.1 102,089 - DZA65_RS00420 0.54 -1.2 102,161 - DZA65_RS00420 0.57 -2.9 102,427 - DZA65_RS00420 0.68 -1.3 102,427 - DZA65_RS00420 0.68 +1.1 102,482 - DZA65_RS00420 0.70 -0.9 102,507 - DZA65_RS00420 0.71 -0.7 102,531 + DZA65_RS00420 0.72 -0.6 102,576 - DZA65_RS00420 0.74 -1.4 102,603 + DZA65_RS00420 0.75 +1.7 102,604 - DZA65_RS00420 0.75 -0.8 102,604 - DZA65_RS00420 0.75 +0.7 102,647 - DZA65_RS00420 0.77 -0.8 102,647 - DZA65_RS00420 0.77 -0.8 102,647 - DZA65_RS00420 0.77 -2.0 102,679 + DZA65_RS00420 0.78 -0.6 102,689 - DZA65_RS00420 0.78 -0.7 102,698 - DZA65_RS00420 0.79 -0.4 102,698 - DZA65_RS00420 0.79 -2.4 102,749 - DZA65_RS00420 0.81 +0.7 102,749 - DZA65_RS00420 0.81 -1.0 102,933 + DZA65_RS00420 0.88 -0.4 102,934 - DZA65_RS00420 0.89 -0.7 102,972 + +0.5 102,972 + -0.5 102,979 + +1.6 102,979 + +0.9 102,980 - -0.6 102,980 - -2.6 102,980 - -0.4 102,980 - -0.5 102,980 - -1.2 102,980 - +0.7 103,063 - +1.9 103,097 - -1.8 103,117 - -1.0 103,201 - -0.7 103,201 - -1.7 103,205 + -0.1 103,206 - +2.3 103,212 - +1.0 103,228 + -1.4 103,228 + +0.1 103,228 + +0.1 103,229 - +1.0 103,229 - -1.4 103,269 - +1.9 103,308 + +0.7 103,308 + +0.2 103,308 + -0.5 103,308 + -1.3 103,308 + -0.1 103,309 - -0.6 103,309 - +0.1 103,309 - -0.2 103,309 - -0.2 103,309 - +1.2 103,309 - -0.1 103,309 - +0.1 103,309 - +0.4 103,309 - +0.9 103,309 - -1.3 103,309 - -0.5 103,312 + -0.3 103,312 + -0.3 103,313 - +1.7 103,313 - +0.7 103,313 - -0.3 103,313 - -1.0 103,313 - +0.2 103,334 - -2.2 103,393 - +1.1 103,408 - +1.3 103,408 - +1.3 103,408 - -0.1 103,435 + +0.6 103,435 + +0.2 103,435 + -0.5 103,435 + +0.9 103,435 + +0.9 103,435 + -0.0 103,436 - -0.3 103,436 - +1.1 103,436 - +0.3 103,462 + +0.7 103,463 - +0.4 103,463 - -1.2 103,485 + +0.3 103,485 + +0.1 103,485 + +0.7 103,485 + +1.4 103,485 + +1.1 103,485 + -0.3 103,485 + -0.9 103,486 - -0.3 103,486 - +0.7 103,486 - +0.2 103,486 - -0.3 103,486 - +0.8 103,496 + +1.1 103,503 - +0.5 103,583 - DZA65_RS00425 0.12 -0.2 103,589 + DZA65_RS00425 0.12 +0.5 103,590 - DZA65_RS00425 0.12 +0.9 103,590 - DZA65_RS00425 0.12 +0.5 103,590 - DZA65_RS00425 0.12 +0.5 103,590 - DZA65_RS00425 0.12 -2.1 103,590 - DZA65_RS00425 0.12 -0.3 103,600 + DZA65_RS00425 0.13 -1.7 103,641 + DZA65_RS00425 0.16 +0.4 103,641 + DZA65_RS00425 0.16 -0.3 103,642 - DZA65_RS00425 0.16 +0.4 103,642 - DZA65_RS00425 0.16 +0.8 103,642 - DZA65_RS00425 0.16 +0.0 103,642 - DZA65_RS00425 0.16 +1.2 103,642 - DZA65_RS00425 0.16 +0.1 103,642 - DZA65_RS00425 0.16 +0.3 103,642 - DZA65_RS00425 0.16 +0.3 103,642 - DZA65_RS00425 0.16 +0.4 103,649 + DZA65_RS00425 0.16 +0.1 103,658 + DZA65_RS00425 0.17 +0.4 103,659 - DZA65_RS00425 0.17 +3.5 103,738 + DZA65_RS00425 0.23 -0.8 103,738 + DZA65_RS00425 0.23 -1.9 103,739 - DZA65_RS00425 0.23 +0.8 103,739 - DZA65_RS00425 0.23 +1.0
Or see this region's nucleotide sequence