Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22940

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,183,913	+		DZA65_RS14630	0.29	-1.1
3,183,913	+		DZA65_RS14630	0.29	-0.5
3,183,931	+		DZA65_RS14630	0.31	-0.2
3,183,931	+		DZA65_RS14630	0.31	-0.4
3,183,932	-		DZA65_RS14630	0.31	-0.6
3,183,932	-		DZA65_RS14630	0.31	-0.0
3,183,932	-		DZA65_RS14630	0.31	+0.5
3,183,932	-		DZA65_RS14630	0.31	-2.5
3,183,974	+		DZA65_RS14630	0.36	-0.6
3,183,975	-		DZA65_RS14630	0.36	+0.2
3,183,975	-		DZA65_RS14630	0.36	+0.5
3,184,155	+		DZA65_RS14630	0.56	-0.7
3,184,155	+		DZA65_RS14630	0.56	-1.3
3,184,156	-		DZA65_RS14630	0.56	+0.5
3,184,156	-		DZA65_RS14630	0.56	-0.3
3,184,188	-		DZA65_RS14630	0.59	-0.6
3,184,218	+		DZA65_RS14630	0.63	+0.7
3,184,218	+		DZA65_RS14630	0.63	+0.1
3,184,218	+		DZA65_RS14630	0.63	-1.5
3,184,218	+		DZA65_RS14630	0.63	+0.6
3,184,218	+		DZA65_RS14630	0.63	-0.4
3,184,218	+		DZA65_RS14630	0.63	-0.2
3,184,218	+		DZA65_RS14630	0.63	-0.6
3,184,218	+		DZA65_RS14630	0.63	-2.2
3,184,218	+		DZA65_RS14630	0.63	+0.0
3,184,218	+		DZA65_RS14630	0.63	-0.5
3,184,218	+		DZA65_RS14630	0.63	-1.0
3,184,218	+		DZA65_RS14630	0.63	-0.1
3,184,218	+		DZA65_RS14630	0.63	-0.3
3,184,219	-		DZA65_RS14630	0.63	+0.2
3,184,219	-		DZA65_RS14630	0.63	+0.5
3,184,219	-				+1.6
3,184,219	-		DZA65_RS14630	0.63	+0.1
3,184,297	+		DZA65_RS14630	0.71	-1.5
3,184,297	+		DZA65_RS14630	0.71	-0.4
3,184,298	-		DZA65_RS14630	0.72	-1.8
3,184,362	+		DZA65_RS14630	0.79	-0.2
3,184,362	+		DZA65_RS14630	0.79	-1.6
3,184,362	+		DZA65_RS14630	0.79	-0.1
3,184,362	+		DZA65_RS14630	0.79	+0.3
3,184,362	+		DZA65_RS14630	0.79	+0.0
3,184,362	+		DZA65_RS14630	0.79	-0.1
3,184,362	+		DZA65_RS14630	0.79	-1.8
3,184,363	-		DZA65_RS14630	0.79	+0.1
3,184,363	-		DZA65_RS14630	0.79	-0.6
3,184,363	-		DZA65_RS14630	0.79	+0.5
3,184,363	-		DZA65_RS14630	0.79	-0.5
3,184,422	+		DZA65_RS14630	0.85	-0.0
3,184,423	-		DZA65_RS14630	0.85	-0.3
3,184,429	+		DZA65_RS14630	0.86	-0.8
3,184,430	-		DZA65_RS14630	0.86	-0.8
3,184,430	-		DZA65_RS14630	0.86	-0.5
3,184,438	+		DZA65_RS14630	0.87	-0.4
3,184,438	+		DZA65_RS14630	0.87	-0.6
3,184,438	+		DZA65_RS14630	0.87	-1.0
3,184,453	+		DZA65_RS14630	0.89	+0.1
3,184,454	-		DZA65_RS14630	0.89	-1.8
3,184,454	-		DZA65_RS14630	0.89	-0.6
3,184,528	+				-1.6
3,184,528	+				-0.4
3,184,528	+				-0.6
3,184,529	-				-1.5
3,184,529	-				+0.1
3,184,529	-				-0.4
3,184,617	+				+0.3
3,184,617	+				+1.4
3,184,617	+				-0.5
3,184,618	-				-0.1
3,184,622	-				-0.0
3,184,622	-				-1.6
3,184,622	-				-0.3
3,184,622	-				+0.4
3,184,622	-				-1.0
3,184,622	-				-0.5
3,184,628	+				-2.2
3,184,628	+				+0.3
3,184,628	+				-0.8
3,184,628	+				-0.4
3,184,628	+				-0.2
3,184,629	-				-0.4
3,184,629	-				+0.1
3,184,629	-				+0.5
3,184,629	-				-0.5
3,184,629	-				-0.2
3,184,629	-				-1.6
3,184,650	+				-0.4
3,184,650	+				+1.2
3,184,650	+				-0.9
3,184,651	-				-0.3
3,184,651	-				-0.8
3,184,651	-				-0.1
3,184,651	-				+0.8
3,184,651	-				-0.8
3,184,651	-				+0.2
3,184,780	+				+0.2
3,184,781	-				-0.6
3,185,019	+		DZA65_RS22940	0.55	+1.0
3,185,020	-		DZA65_RS22940	0.56	+0.2
3,185,020	-		DZA65_RS22940	0.56	+0.8
3,185,020	-		DZA65_RS22940	0.56	+1.6
3,185,020	-		DZA65_RS22940	0.56	-0.5
3,185,028	+		DZA65_RS22940	0.59	+0.9
3,185,029	-		DZA65_RS22940	0.59	-0.4
3,185,029	-		DZA65_RS22940	0.59	-0.2
3,185,069	+		DZA65_RS22940	0.74	-0.6
3,185,069	+		DZA65_RS22940	0.74	+0.8
3,185,069	+		DZA65_RS22940	0.74	+0.5
3,185,070	-		DZA65_RS22940	0.75	+0.4
3,185,101	+		DZA65_RS22940	0.86	-0.2
3,185,102	-		DZA65_RS22940	0.87	-1.0
3,185,112	+				+2.8
3,185,112	+				+1.2
3,185,113	-				+0.0
3,185,113	-				-1.5
3,185,136	-				-0.3
3,185,163	+				+0.3
3,185,163	+				-1.0
3,185,164	-				-0.2
3,185,164	-				-1.8
3,185,174	+				-0.1
3,185,174	+				-0.5
3,185,175	-				-0.1
3,185,175	-				+0.6
3,185,175	-				-0.6
3,185,180	+		DZA65_RS14640	0.11	+0.2
3,185,181	-		DZA65_RS14640	0.11	-0.3
3,185,362	+		DZA65_RS14640	0.60	+1.0
3,185,362	+		DZA65_RS14640	0.60	-3.1
3,185,411	+		DZA65_RS14640	0.73	-0.6
3,185,411	+		DZA65_RS14640	0.73	-0.1
3,185,411	+		DZA65_RS14640	0.73	-0.5
3,185,411	+		DZA65_RS14640	0.73	-0.4
3,185,411	+		DZA65_RS14640	0.73	-0.6
3,185,412	-		DZA65_RS14640	0.74	-0.2
3,185,412	-		DZA65_RS14640	0.74	+0.5
3,185,412	-		DZA65_RS14640	0.74	-0.1
3,185,412	-		DZA65_RS14640	0.74	-1.6
3,185,412	-		DZA65_RS14640	0.74	-1.0
3,185,529	+				-0.3
3,185,529	+				-0.0
3,185,554	+				-0.2
3,185,554	+				-0.3
3,185,554	+				-1.1
3,185,554	+				-1.1
3,185,554	+				-1.4
3,185,554	+				+0.3
3,185,554	+				-0.7
3,185,554	+				-1.0
3,185,554	+				+0.1
3,185,554	+				-1.6
3,185,554	+				-0.5
3,185,554	+				+1.1
3,185,554	+				-1.5
3,185,554	+				+0.0
3,185,554	+				-0.6
3,185,554	+				+0.1
3,185,554	+				-2.9
3,185,554	+				-1.5
3,185,554	+				+0.4
3,185,554	+				-0.4
3,185,555	-				+0.8
3,185,555	-				-0.9
3,185,555	-				-0.4
3,185,555	-				-0.7
3,185,555	-				-1.0
3,185,555	-				-0.9
3,185,555	-				-0.8
3,185,555	-				+0.8
3,185,555	-				-0.7
3,185,555	-				-0.1
3,185,555	-				-0.2
3,185,555	-				+2.4
3,185,555	-				-1.8
3,185,626	+		DZA65_RS14645	0.15	-1.3
3,185,626	+				+0.8
3,185,626	+		DZA65_RS14645	0.15	+0.0
3,185,627	-		DZA65_RS14645	0.15	+0.2
3,185,627	-		DZA65_RS14645	0.15	-1.0
3,185,627	-		DZA65_RS14645	0.15	+0.4
3,185,627	-		DZA65_RS14645	0.15	-0.6
3,185,636	+		DZA65_RS14645	0.17	-0.5
3,185,637	-		DZA65_RS14645	0.17	+0.0
3,185,637	-		DZA65_RS14645	0.17	-1.2
3,185,637	-		DZA65_RS14645	0.17	+1.2
3,185,707	-		DZA65_RS14645	0.31	-0.2
3,185,745	+		DZA65_RS14645	0.38	-0.4
3,185,746	-		DZA65_RS14645	0.39	-0.6
3,185,746	-		DZA65_RS14645	0.39	+0.1
3,185,746	-		DZA65_RS14645	0.39	+0.0
3,185,776	-		DZA65_RS14645	0.45	+0.1
3,185,866	+		DZA65_RS14645	0.63	+0.3
3,185,867	-		DZA65_RS14645	0.63	-0.2
3,185,883	+		DZA65_RS14645	0.66	-0.0
3,185,883	+		DZA65_RS14645	0.66	-0.5
3,185,907	+		DZA65_RS14645	0.71	-0.6
3,185,939	+		DZA65_RS14645	0.77	+1.1
3,185,939	+		DZA65_RS14645	0.77	-1.4
3,185,940	-		DZA65_RS14645	0.77	-0.4
3,185,940	-		DZA65_RS14645	0.77	-1.4
3,185,940	-		DZA65_RS14645	0.77	+1.4
3,185,940	-		DZA65_RS14645	0.77	+0.0
3,185,940	-		DZA65_RS14645	0.77	+0.2
3,185,941	+		DZA65_RS14645	0.78	+1.3
3,185,941	+		DZA65_RS14645	0.78	+0.8
3,185,941	+		DZA65_RS14645	0.78	+0.8
3,185,942	-		DZA65_RS14645	0.78	-0.8
3,185,942	-		DZA65_RS14645	0.78	-0.1
3,186,052	+				-0.4
3,186,052	+				-0.7
3,186,052	+				-1.3
3,186,052	+				+0.2
3,186,052	+				-0.4
3,186,052	+				-0.4
3,186,052	+				+1.1
3,186,052	+				-1.0
3,186,052	+				-0.2
3,186,052	+				+0.2
3,186,052	+				+0.6
3,186,052	+				+0.2
3,186,052	+				+0.3
3,186,053	-				+0.8
3,186,053	-				+0.1
3,186,053	-				+0.8
3,186,053	-				-0.3
3,186,053	-				+0.8
3,186,053	-				-1.5
3,186,053	-				-1.0
3,186,053	-				+0.3
3,186,053	-				-0.5
3,186,053	-				-0.0
3,186,053	-				+0.2
3,186,053	-				+0.8
3,186,053	-				-0.9
3,186,053	-				-0.9
3,186,066	+				-1.5
3,186,067	-				-0.8
3,186,067	-				-0.2
3,186,067	-				-0.7
3,186,105	+				-0.2
3,186,105	+				-1.5
3,186,105	+				+1.3
3,186,105	+				-1.3
3,186,105	+				+0.4
3,186,106	-				+0.4
3,186,106	-				+1.1
3,186,107	+				+0.3
3,186,107	+				-1.0
3,186,107	+				-0.4
3,186,107	+				-0.3
3,186,107	+				-0.6
3,186,107	+				+0.8
3,186,107	+				-0.1
3,186,107	+				+0.2
3,186,107	+				-0.6
3,186,107	+				-1.6
3,186,108	-				-0.8
3,186,108	-				-0.7
3,186,108	-				-0.8
3,186,108	-				+0.2
3,186,108	-				+0.2
3,186,108	-				-1.0
3,186,108	-				+0.8
3,186,108	-				+0.2
3,186,108	-				+0.1
3,186,108	-				-1.9
3,186,108	-				-0.1
3,186,130	-				-0.6