Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22610

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	PDB
				remove
4,888,780	+			+0.1
4,888,780	+			+0.6
4,888,780	+			-1.5
4,888,780	+			-1.3
4,888,780	+			-2.6
4,888,781	-			+0.0
4,888,781	-			-0.1
4,888,781	-			-1.0
4,888,781	-			-0.8
4,888,789	+			-1.3
4,888,789	+			+0.7
4,888,789	+			+1.1
4,888,828	-			+0.3
4,888,845	+			+0.0
4,888,862	+			+0.1
4,888,863	-			-2.3
4,888,863	-			-0.5
4,888,863	-			+0.0
4,888,863	-			-0.4
4,888,866	+			+0.9
4,888,867	-			-0.3
4,888,867	-			-1.3
4,888,878	+			+0.3
4,888,878	+			-0.4
4,888,878	+			+0.7
4,888,879	-			-0.8
4,888,881	+			-0.4
4,888,882	-			-0.1
4,888,890	+			+0.6
4,888,904	+			-1.1
4,888,904	+			+0.1
4,888,904	+			-0.1
4,888,904	+			-0.4
4,888,904	+			-0.1
4,888,904	+			-0.3
4,888,904	+			-0.4
4,888,904	+			+0.3
4,888,904	+			-1.2
4,888,904	+			+1.3
4,888,904	+			-0.5
4,888,905	-			+1.5
4,888,905	-			+0.4
4,888,905	-			-1.1
4,888,905	-			-1.7
4,888,905	-			-0.9
4,888,905	-			-0.1
4,888,905	-			-1.0
4,888,905	-			+0.7
4,888,905	-			-1.3
4,888,905	-			+0.2
4,888,909	-			+1.3
4,888,909	-			+0.7
4,888,909	-			-0.3
4,888,909	-			-1.8
4,888,909	-			-2.4
4,888,911	-			-0.4
4,888,920	-			+0.6
4,888,920	-			-0.0
4,888,920	-			-0.2
4,888,920	-			+0.2
4,889,044	+			+1.5
4,889,044	+			+0.5
4,889,045	-			+0.3
4,889,046	+			+0.4
4,889,046	+			+0.5
4,889,046	+			-0.4
4,889,046	+			+0.2
4,889,046	+			+0.2
4,889,046	+			+1.3
4,889,046	+			+0.8
4,889,046	+			+1.7
4,889,046	+			-0.4
4,889,046	+			-0.2
4,889,046	+			-1.4
4,889,046	+			-1.7
4,889,046	+			+1.6
4,889,046	+			+0.3
4,889,046	+			-0.3
4,889,046	+			-0.5
4,889,046	+			-0.8
4,889,046	+			-0.3
4,889,046	+			-0.8
4,889,047	-			-0.0
4,889,047	-			+0.8
4,889,047	-			+0.1
4,889,047	-			-0.2
4,889,047	-			-0.3
4,889,047	-			-1.3
4,889,047	-			+0.5
4,889,047	-			+0.2
4,889,047	-			-0.3
4,889,067	+			+0.1
4,889,068	-			+0.0
4,889,100	+			+0.3
4,889,100	+			+1.1
4,889,101	-			-1.5
4,889,101	-			+0.5
4,889,102	+			+1.1
4,889,102	+			-0.7
4,889,102	+			-0.4
4,889,102	+			+0.3
4,889,102	+			+0.2
4,889,103	-			-1.7
4,889,103	-			+0.0
4,889,118	+			+0.3
4,889,119	-			-0.4
4,889,146	-			-0.3
4,889,200	-			+0.5
4,889,200	-			-0.9
4,889,201	+			-0.8
4,889,201	+			-0.3
4,889,212	+			+0.4
4,889,212	+			+0.3
4,889,213	-			-0.1
4,889,213	-			-0.7
4,889,227	+			-0.3
4,889,227	+			+0.4
4,889,227	+			-1.0
4,889,228	-			-0.4
4,889,228	-			+0.5
4,889,228	-			-2.0
4,889,228	-			-0.4
4,889,237	+			-0.6
4,889,249	+			-1.5
4,889,250	-			+0.6
4,889,256	-			+0.2
4,889,263	+			-1.3
4,889,263	+			-0.1
4,889,263	+			+0.1
4,889,281	-			+0.6
4,889,308	+			+0.4
4,889,309	-			+0.0
4,889,309	-			+0.2
4,889,329	+			+0.5
4,889,398	+			+0.4
4,889,442	+			+0.0
4,889,463	+			-0.3
4,889,463	+			+0.5
4,889,463	+			+0.8
4,889,463	+			-0.4
4,889,463	+			-0.0
4,889,464	-			+0.7
4,889,464	-			-0.4
4,889,464	-			-0.7
4,889,464	-			+0.0
4,889,464	-			+0.5
4,889,498	+			-0.6
4,889,498	+			-1.7
4,889,498	+			-0.4
4,889,498	+			-0.1
4,889,512	+			+0.7
4,889,513	-			+0.0
4,889,513	-			+0.3
4,889,515	+			+0.3
4,889,523	+			-0.1
4,889,523	+			+0.6
4,889,537	+			-1.1
4,889,551	+			-1.0
4,889,569	+			+0.2
4,889,572	+			-0.8
4,889,572	+			-0.3
4,889,572	+			-0.3
4,889,573	-			+3.1
4,889,573	-			+1.0
4,889,573	-			-0.4
4,889,573	-			-0.8
4,889,573	-			-1.5
4,889,584	+			+2.0
4,889,584	+			-1.4
4,889,585	-			-0.4
4,889,585	-			-1.0
4,889,587	+			-3.2
4,889,588	-			-2.1
4,889,588	-			-0.8
4,889,596	+			+0.7
4,889,597	-			-0.3
4,889,608	+			+0.7
4,889,609	-			-1.0
4,889,609	-			-0.5
4,889,609	-			-0.0
4,889,613	-			-0.4
4,889,613	-			-0.0
4,889,628	+			-0.4
4,889,629	-			+0.7
4,889,650	+			+0.1
4,889,650	+			+0.3
4,889,650	+			+1.3
4,889,650	+			+0.3
4,889,650	+			+0.5
4,889,650	+			-1.3
4,889,650	+			-0.4
4,889,650	+			-1.3
4,889,650	+			+0.1
4,889,651	-			+1.3
4,889,651	-			+0.5
4,889,651	-			-1.6
4,889,651	-			-0.0
4,889,651	-			+0.3
4,889,651	-			-1.3
4,889,651	-			-1.1
4,889,651	-			+0.3
4,889,651	-			-0.8
4,889,651	-			+0.1
4,889,651	-			-0.0
4,889,655	-			+0.6
4,889,728	+			+0.7
4,889,728	+			-0.3
4,889,728	+			-0.6
4,889,728	+			+0.8
4,889,729	-			+0.6
4,889,729	-			-0.2
4,889,729	-			-0.5
4,889,729	-			-0.3
4,889,729	-			-2.0
4,889,729	-			-0.2
4,889,729	-			+0.5
4,889,741	-			+0.5
4,889,759	+			+0.1
4,889,760	-			-0.2
4,889,760	-			-0.6
4,889,760	-			-0.4
4,889,760	-			-0.3
4,889,775	+			-2.4
4,889,775	+			+0.5
4,889,776	-			-0.1
4,889,776	-			-0.1
4,889,796	+			-2.0
4,889,796	+			+1.1
4,889,848	+			+2.1
4,889,848	+			-0.3
4,889,849	-			-0.6
4,889,849	-			-1.3
4,889,989	+	DZA65_RS22610	0.20	-1.2
4,889,989	+	DZA65_RS22610	0.20	-0.5
4,889,990	-	DZA65_RS22610	0.20	-0.6
4,889,990	-	DZA65_RS22610	0.20	+0.7
4,889,992	+	DZA65_RS22610	0.20	+0.1
4,889,992	+	DZA65_RS22610	0.20	-1.0
4,889,992	+	DZA65_RS22610	0.20	-0.3
4,889,992	+	DZA65_RS22610	0.20	+0.1
4,889,992	+	DZA65_RS22610	0.20	+0.7
4,889,992	+	DZA65_RS22610	0.20	-1.4
4,889,992	+	DZA65_RS22610	0.20	-0.4
4,889,992	+	DZA65_RS22610	0.20	-1.3
4,889,992	+	DZA65_RS22610	0.20	-0.4
4,889,992	+			+1.3
4,889,993	-	DZA65_RS22610	0.20	+0.5
4,889,993	-	DZA65_RS22610	0.20	-0.3
4,889,993	-	DZA65_RS22610	0.20	-1.0
4,889,993	-	DZA65_RS22610	0.20	-1.8
4,889,993	-	DZA65_RS22610	0.20	-1.5
4,889,993	-	DZA65_RS22610	0.20	-0.5
4,889,993	-	DZA65_RS22610	0.20	-1.0
4,889,993	-	DZA65_RS22610	0.20	-1.2
4,889,993	-	DZA65_RS22610	0.20	+0.2
4,890,087	+			+1.3
4,890,115	+	DZA65_RS22610	0.31	-0.3
4,890,115	+	DZA65_RS22610	0.31	+0.3
4,890,115	+	DZA65_RS22610	0.31	-0.5
4,890,115	+	DZA65_RS22610	0.31	-1.1
4,890,116	-	DZA65_RS22610	0.31	-0.8
4,890,127	+	DZA65_RS22610	0.32	-0.4
4,890,128	-	DZA65_RS22610	0.32	-0.8
4,890,128	-	DZA65_RS22610	0.32	+1.3
4,890,150	-	DZA65_RS22610	0.34	-2.0
4,890,169	+	DZA65_RS22610	0.36	+1.1
4,890,169	+	DZA65_RS22610	0.36	-1.1
4,890,169	+	DZA65_RS22610	0.36	-0.6
4,890,169	+	DZA65_RS22610	0.36	-1.0
4,890,169	+	DZA65_RS22610	0.36	+0.4
4,890,170	-	DZA65_RS22610	0.36	-0.1
4,890,170	-	DZA65_RS22610	0.36	+0.3
4,890,206	-	DZA65_RS22610	0.39	+1.0
4,890,206	-	DZA65_RS22610	0.39	-1.5
4,890,245	+	DZA65_RS22610	0.42	-0.8
4,890,245	+	DZA65_RS22610	0.42	+0.3
4,890,245	+	DZA65_RS22610	0.42	+0.0
4,890,245	+	DZA65_RS22610	0.42	-0.3
4,890,245	+	DZA65_RS22610	0.42	-1.5
4,890,245	+	DZA65_RS22610	0.42	-0.7
4,890,245	+	DZA65_RS22610	0.42	-0.6
4,890,245	+	DZA65_RS22610	0.42	-1.1
4,890,245	+	DZA65_RS22610	0.42	-1.3
4,890,245	+	DZA65_RS22610	0.42	-0.7
4,890,246	-	DZA65_RS22610	0.42	-1.3
4,890,246	-	DZA65_RS22610	0.42	-0.8
4,890,246	-	DZA65_RS22610	0.42	+1.3
4,890,246	-	DZA65_RS22610	0.42	-0.1
4,890,246	-	DZA65_RS22610	0.42	-0.7
4,890,246	-	DZA65_RS22610	0.42	+0.2
4,890,248	+	DZA65_RS22610	0.43	-0.5
4,890,277	+	DZA65_RS22610	0.45	-0.7
4,890,467	+	DZA65_RS22610	0.62	-0.7
4,890,467	+	DZA65_RS22610	0.62	+0.1
4,890,467	+	DZA65_RS22610	0.62	-0.7
4,890,467	+	DZA65_RS22610	0.62	-0.7
4,890,467	+	DZA65_RS22610	0.62	-0.4
4,890,467	+	DZA65_RS22610	0.62	-0.3
4,890,468	-	DZA65_RS22610	0.62	-0.7
4,890,468	-	DZA65_RS22610	0.62	-0.2
4,890,468	-	DZA65_RS22610	0.62	+0.3
4,890,468	-	DZA65_RS22610	0.62	+0.3
4,890,560	+	DZA65_RS22610	0.70	-1.3
4,890,560	+	DZA65_RS22610	0.70	-0.3
4,890,560	+	DZA65_RS22610	0.70	+0.0
4,890,561	-	DZA65_RS22610	0.70	+0.3
4,890,640	+	DZA65_RS22610	0.77	-0.5
4,890,651	+	DZA65_RS22610	0.78	-0.3
4,890,652	-	DZA65_RS22610	0.78	+0.5
4,890,700	-	DZA65_RS22610	0.82	+0.0
4,890,700	-	DZA65_RS22610	0.82	+1.7
4,890,712	+	DZA65_RS22610	0.83	-0.4
4,890,745	+	DZA65_RS22610	0.86	-0.5
4,890,755	+			+0.9
4,890,755	+	DZA65_RS22610	0.87	-0.3
4,890,755	+	DZA65_RS22610	0.87	-1.9
4,890,755	+	DZA65_RS22610	0.87	-0.7
4,890,756	-	DZA65_RS22610	0.87	-0.4
4,890,756	-	DZA65_RS22610	0.87	-0.5
4,890,756	-	DZA65_RS22610	0.87	-0.8
4,890,756	-	DZA65_RS22610	0.87	-0.1
4,890,756	-	DZA65_RS22610	0.87	-0.7
4,890,756	-	DZA65_RS22610	0.87	-1.8
4,890,758	+	DZA65_RS22610	0.87	+1.3
4,890,759	-	DZA65_RS22610	0.87	+0.1
4,890,794	-			-0.8
4,890,814	+			+0.9
4,890,908	+			+0.0
4,890,908	+			-2.0
4,890,908	+			-0.8
4,890,908	+			+0.6
4,890,908	+			-0.7
4,890,909	-			-1.4
4,890,909	-			+0.5
4,890,909	-			-0.8
4,890,909	-			-0.5
4,890,909	-			-0.1
4,890,948	+			+0.0
4,890,949	-			+0.1
4,890,949	-			-0.4
4,890,949	-			-0.0
4,891,012	-	DZA65_RS22615	0.11	+0.1
4,891,046	-	DZA65_RS22615	0.14	-0.2
4,891,152	+	DZA65_RS22615	0.25	-1.5
4,891,152	+	DZA65_RS22615	0.25	-0.9
4,891,152	+	DZA65_RS22615	0.25	-0.7
4,891,152	+	DZA65_RS22615	0.25	-0.9
4,891,152	+	DZA65_RS22615	0.25	-0.7
4,891,153	-	DZA65_RS22615	0.25	+1.3
4,891,153	-	DZA65_RS22615	0.25	+0.3
4,891,153	-	DZA65_RS22615	0.25	-0.5
4,891,153	-	DZA65_RS22615	0.25	-2.1
4,891,153	-	DZA65_RS22615	0.25	+0.2
4,891,153	-	DZA65_RS22615	0.25	-0.1
4,891,156	+	DZA65_RS22615	0.25	-0.1
4,891,156	+	DZA65_RS22615	0.25	+0.6
4,891,157	-	DZA65_RS22615	0.25	-0.5
4,891,285	+	DZA65_RS22615	0.38	+0.8
4,891,285	+	DZA65_RS22615	0.38	-1.3
4,891,286	-	DZA65_RS22615	0.38	+0.3
4,891,286	-	DZA65_RS22615	0.38	-1.0
4,891,335	+	DZA65_RS22615	0.43	+0.1
4,891,336	-	DZA65_RS22615	0.43	+0.7
4,891,336	-	DZA65_RS22615	0.43	-1.1
4,891,407	+	DZA65_RS22615	0.50	-0.7
4,891,407	+	DZA65_RS22615	0.50	-0.8
4,891,407	+	DZA65_RS22615	0.50	+1.3
4,891,407	+	DZA65_RS22615	0.50	+0.5
4,891,408	-	DZA65_RS22615	0.50	-1.0
4,891,408	-	DZA65_RS22615	0.50	-1.0
4,891,408	-	DZA65_RS22615	0.50	-0.3
4,891,408	-	DZA65_RS22615	0.50	-2.9
4,891,408	-	DZA65_RS22615	0.50	-0.7
4,891,408	-	DZA65_RS22615	0.50	-2.9
4,891,431	+	DZA65_RS22615	0.52	+2.1
4,891,431	+	DZA65_RS22615	0.52	+0.8
4,891,432	-	DZA65_RS22615	0.53	-0.4
4,891,432	-	DZA65_RS22615	0.53	+0.5
4,891,432	-	DZA65_RS22615	0.53	-0.5
4,891,432	-	DZA65_RS22615	0.53	+1.3
4,891,432	-	DZA65_RS22615	0.53	-0.6
4,891,432	-	DZA65_RS22615	0.53	+0.7
4,891,474	-	DZA65_RS22615	0.57	-1.8
4,891,491	+	DZA65_RS22615	0.58	-0.7
4,891,491	+	DZA65_RS22615	0.58	-1.1
4,891,491	+	DZA65_RS22615	0.58	+0.9
4,891,491	+	DZA65_RS22615	0.58	+0.3
4,891,491	+	DZA65_RS22615	0.58	-1.3
4,891,491	+	DZA65_RS22615	0.58	-0.1
4,891,492	-	DZA65_RS22615	0.59	+0.7
4,891,492	-	DZA65_RS22615	0.59	-0.2
4,891,492	-	DZA65_RS22615	0.59	-1.6
4,891,492	-	DZA65_RS22615	0.59	+0.0
4,891,518	+	DZA65_RS22615	0.61	-0.3
4,891,519	-	DZA65_RS22615	0.61	-0.8
4,891,519	-	DZA65_RS22615	0.61	+0.4
4,891,519	-	DZA65_RS22615	0.61	+0.2
4,891,558	+	DZA65_RS22615	0.65	-0.7
4,891,558	+	DZA65_RS22615	0.65	+0.5
4,891,558	+	DZA65_RS22615	0.65	-0.4
4,891,558	+	DZA65_RS22615	0.65	-1.5
4,891,558	+	DZA65_RS22615	0.65	-1.5
4,891,558	+	DZA65_RS22615	0.65	+2.3
4,891,559	-	DZA65_RS22615	0.65	-1.0
4,891,559	-	DZA65_RS22615	0.65	+0.3
4,891,559	-	DZA65_RS22615	0.65	-0.5
4,891,559	-	DZA65_RS22615	0.65	+0.2
4,891,578	+	DZA65_RS22615	0.67	-1.3
4,891,588	+	DZA65_RS22615	0.68	-1.8
4,891,588	+	DZA65_RS22615	0.68	+0.2
4,891,588	+	DZA65_RS22615	0.68	-1.0
4,891,588	+	DZA65_RS22615	0.68	-0.1
4,891,588	+	DZA65_RS22615	0.68	-1.6
4,891,588	+	DZA65_RS22615	0.68	+0.8
4,891,588	+	DZA65_RS22615	0.68	-0.9
4,891,588	+	DZA65_RS22615	0.68	-0.1
4,891,588	+	DZA65_RS22615	0.68	-0.2
4,891,589	-			+1.6
4,891,589	-	DZA65_RS22615	0.68	-0.1
4,891,589	-	DZA65_RS22615	0.68	+0.3
4,891,589	-	DZA65_RS22615	0.68	-0.1
4,891,589	-	DZA65_RS22615	0.68	+0.4
4,891,589	-	DZA65_RS22615	0.68	-0.4
4,891,589	-	DZA65_RS22615	0.68	-0.8
4,891,589	-	DZA65_RS22615	0.68	+0.7
4,891,589	-	DZA65_RS22615	0.68	-0.7
4,891,589	-	DZA65_RS22615	0.68	-0.6
4,891,737	+	DZA65_RS22615	0.83	-0.5
4,891,737	+	DZA65_RS22615	0.83	+1.1
4,891,738	-	DZA65_RS22615	0.83	+0.4
4,891,738	-	DZA65_RS22615	0.83	+0.6
4,891,738	-	DZA65_RS22615	0.83	+0.3
4,891,738	-	DZA65_RS22615	0.83	-2.8
4,891,738	-	DZA65_RS22615	0.83	-1.1
4,891,764	+	DZA65_RS22615	0.86	-0.7
4,891,786	-	DZA65_RS22615	0.88	-1.0
4,891,804	+	DZA65_RS22615	0.90	-1.2
4,891,804	+	DZA65_RS22615	0.90	-0.1
4,891,804	+	DZA65_RS22615	0.90	+0.0
4,891,804	+	DZA65_RS22615	0.90	+1.1
4,891,804	+	DZA65_RS22615	0.90	+1.7
4,891,804	+	DZA65_RS22615	0.90	-1.4
4,891,804	+	DZA65_RS22615	0.90	-0.1
4,891,804	+	DZA65_RS22615	0.90	-1.0
4,891,804	+	DZA65_RS22615	0.90	-0.6
4,891,804	+	DZA65_RS22615	0.90	+1.1
4,891,805	-	DZA65_RS22615	0.90	-0.6
4,891,805	-	DZA65_RS22615	0.90	+0.3
4,891,805	-	DZA65_RS22615	0.90	+1.7
4,891,805	-	DZA65_RS22615	0.90	-0.5
4,891,805	-	DZA65_RS22615	0.90	-1.6
4,891,805	-	DZA65_RS22615	0.90	+0.6
4,891,805	-	DZA65_RS22615	0.90	-0.2
4,891,805	-	DZA65_RS22615	0.90	-0.9
4,891,806	+	DZA65_RS22615	0.90	+0.6
4,891,806	+	DZA65_RS22615	0.90	+0.6
4,891,806	+	DZA65_RS22615	0.90	-0.2
4,891,806	+	DZA65_RS22615	0.90	+1.3
4,891,806	+	DZA65_RS22615	0.90	+0.3
4,891,807	-	DZA65_RS22615	0.90	+0.7
4,891,807	-	DZA65_RS22615	0.90	+0.0
4,891,807	-	DZA65_RS22615	0.90	+0.1
4,891,807	-	DZA65_RS22615	0.90	-1.8
4,891,807	-	DZA65_RS22615	0.90	-1.8
4,891,819	+			-0.7
4,891,820	-			-0.5
4,891,847	-			+0.1
4,891,851	+			+0.7
4,891,851	+			-0.3
4,891,851	+			+0.1
4,891,851	+			+0.5
4,891,852	-			-2.0
4,891,852	-			-0.1
4,891,860	+			-0.7
4,891,860	+			-0.5
4,891,860	+			+0.7
4,891,860	+			+1.1
4,891,860	+			-0.3
4,891,860	+			+0.0
4,891,860	+			+0.0
4,891,860	+			-1.1
4,891,860	+			+0.1
4,891,860	+			+0.2
4,891,860	+			-0.3
4,891,860	+			-0.3
4,891,860	+			-1.3
4,891,860	+			-0.7
4,891,861	-			+1.3
4,891,861	-			-0.5
4,891,861	-			-0.7
4,891,861	-			+0.2
4,891,861	-			-0.2
4,891,861	-			-0.4
4,891,861	-			-0.2
4,891,861	-			+2.1
4,891,861	-			+2.1
4,891,861	-			-0.9
4,891,861	-			-0.8
4,891,861	-			-0.3
4,891,861	-			+0.3
4,891,861	-			-1.2
4,891,861	-			+0.7
4,891,861	-			-0.8
4,891,861	-			+0.7
4,891,861	-			+0.7

Or see this region's nucleotide sequence