Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22255

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,813,785	+		DZA65_RS22245	0.42	+0.5
4,813,785	+		DZA65_RS22245	0.42	-0.9
4,813,869	+		DZA65_RS22245	0.51	-0.3
4,813,870	-		DZA65_RS22245	0.51	-0.8
4,813,901	+		DZA65_RS22245	0.54	+1.1
4,813,902	-		DZA65_RS22245	0.54	-0.1
4,813,917	+		DZA65_RS22245	0.56	+0.1
4,813,917	+		DZA65_RS22245	0.56	-0.3
4,813,918	-		DZA65_RS22245	0.56	+0.2
4,813,920	+		DZA65_RS22245	0.56	+0.3
4,813,920	+		DZA65_RS22245	0.56	+1.3
4,813,920	+		DZA65_RS22245	0.56	-2.4
4,813,920	+		DZA65_RS22245	0.56	-0.3
4,813,920	+		DZA65_RS22245	0.56	-0.3
4,813,920	+		DZA65_RS22245	0.56	+0.2
4,813,920	+		DZA65_RS22245	0.56	+0.0
4,813,920	+		DZA65_RS22245	0.56	+0.0
4,813,921	-		DZA65_RS22245	0.56	-0.5
4,813,921	-		DZA65_RS22245	0.56	-1.2
4,813,921	-		DZA65_RS22245	0.56	+2.1
4,813,973	+		DZA65_RS22245	0.61	+1.1
4,813,973	+		DZA65_RS22245	0.61	-0.6
4,813,973	+		DZA65_RS22245	0.61	+0.3
4,813,974	-		DZA65_RS22245	0.61	-0.3
4,813,974	-		DZA65_RS22245	0.61	-2.0
4,814,015	+		DZA65_RS22245	0.65	+1.1
4,814,086	+		DZA65_RS22245	0.73	-0.9
4,814,087	-		DZA65_RS22245	0.73	-0.6
4,814,155	-		DZA65_RS22245	0.80	-0.3
4,814,201	+		DZA65_RS22245	0.84	-1.0
4,814,201	+		DZA65_RS22245	0.84	+0.9
4,814,201	+		DZA65_RS22245	0.84	+0.0
4,814,201	+		DZA65_RS22245	0.84	+0.5
4,814,202	-		DZA65_RS22245	0.84	-0.5
4,814,202	-		DZA65_RS22245	0.84	+0.6
4,814,202	-		DZA65_RS22245	0.84	-0.3
4,814,202	-		DZA65_RS22245	0.84	+0.3
4,814,202	-		DZA65_RS22245	0.84	-0.5
4,814,202	-		DZA65_RS22245	0.84	+0.1
4,814,208	+		DZA65_RS22245	0.85	-0.6
4,814,208	+		DZA65_RS22245	0.85	-0.4
4,814,208	+		DZA65_RS22245	0.85	-0.6
4,814,209	-		DZA65_RS22245	0.85	-0.3
4,814,209	-		DZA65_RS22245	0.85	-2.1
4,814,209	-		DZA65_RS22245	0.85	-0.1
4,814,223	+		DZA65_RS22245	0.87	+0.1
4,814,231	+		DZA65_RS22245	0.87	-2.9
4,814,246	+		DZA65_RS22245	0.89	-0.8
4,814,246	+		DZA65_RS22245	0.89	+0.3
4,814,246	+		DZA65_RS22245	0.89	+0.8
4,814,246	+		DZA65_RS22245	0.89	-0.1
4,814,246	+		DZA65_RS22245	0.89	-1.0
4,814,247	-		DZA65_RS22245	0.89	-0.3
4,814,247	-		DZA65_RS22245	0.89	-0.3
4,814,247	-		DZA65_RS22245	0.89	-0.7
4,814,250	+		DZA65_RS22245	0.89	+0.2
4,814,250	+		DZA65_RS22245	0.89	+0.3
4,814,250	+		DZA65_RS22245	0.89	-1.6
4,814,250	+		DZA65_RS22245	0.89	-0.4
4,814,250	+		DZA65_RS22245	0.89	+0.5
4,814,250	+		DZA65_RS22245	0.89	+0.2
4,814,250	+		DZA65_RS22245	0.89	+0.2
4,814,250	+		DZA65_RS22245	0.89	-0.7
4,814,250	+		DZA65_RS22245	0.89	-0.5
4,814,250	+		DZA65_RS22245	0.89	+0.3
4,814,250	+		DZA65_RS22245	0.89	+0.2
4,814,250	+		DZA65_RS22245	0.89	+0.6
4,814,250	+		DZA65_RS22245	0.89	-0.2
4,814,250	+		DZA65_RS22245	0.89	-0.9
4,814,250	+		DZA65_RS22245	0.89	-0.2
4,814,250	+		DZA65_RS22245	0.89	+0.4
4,814,250	+		DZA65_RS22245	0.89	-0.4
4,814,250	+		DZA65_RS22245	0.89	-1.0
4,814,250	+		DZA65_RS22245	0.89	-0.7
4,814,250	+		DZA65_RS22245	0.89	+0.5
4,814,250	+		DZA65_RS22245	0.89	+0.6
4,814,251	-		DZA65_RS22245	0.89	+0.0
4,814,251	-		DZA65_RS22245	0.89	-0.9
4,814,251	-		DZA65_RS22245	0.89	-1.5
4,814,251	-		DZA65_RS22245	0.89	-0.1
4,814,251	-		DZA65_RS22245	0.89	-1.0
4,814,251	-		DZA65_RS22245	0.89	-0.2
4,814,251	-		DZA65_RS22245	0.89	-0.7
4,814,251	-		DZA65_RS22245	0.89	-1.4
4,814,251	-		DZA65_RS22245	0.89	-0.3
4,814,251	-		DZA65_RS22245	0.89	+0.0
4,814,251	-		DZA65_RS22245	0.89	-0.1
4,814,251	-		DZA65_RS22245	0.89	-1.8
4,814,251	-		DZA65_RS22245	0.89	-0.8
4,814,251	-		DZA65_RS22245	0.89	-0.6
4,814,251	-		DZA65_RS22245	0.89	-0.5
4,814,251	-		DZA65_RS22245	0.89	+0.0
4,814,251	-		DZA65_RS22245	0.89	+0.1
4,814,251	-		DZA65_RS22245	0.89	-0.1
4,814,251	-		DZA65_RS22245	0.89	+0.1
4,814,251	-		DZA65_RS22245	0.89	+0.1
4,814,251	-		DZA65_RS22245	0.89	+0.5
4,814,251	-		DZA65_RS22245	0.89	-1.0
4,814,253	+				+0.9
4,814,253	+		DZA65_RS22245	0.90	-2.0
4,814,253	+		DZA65_RS22245	0.90	-0.3
4,814,253	+		DZA65_RS22245	0.90	-0.7
4,814,253	+		DZA65_RS22245	0.90	+0.3
4,814,253	+		DZA65_RS22245	0.90	-0.1
4,814,254	-		DZA65_RS22245	0.90	-0.3
4,814,254	-		DZA65_RS22245	0.90	-1.8
4,814,254	-		DZA65_RS22245	0.90	-0.4
4,814,254	-		DZA65_RS22245	0.90	+0.1
4,814,254	-		DZA65_RS22245	0.90	-2.3
4,814,254	-		DZA65_RS22245	0.90	-0.4
4,814,328	+				-2.0
4,814,328	+				+0.5
4,814,329	-				-1.0
4,814,329	-				-0.3
4,814,383	+				-2.1
4,814,383	+				-1.0
4,814,383	+				+1.1
4,814,384	-				+0.2
4,814,427	+		DZA65_RS22250	0.11	-0.1
4,814,428	-		DZA65_RS22250	0.11	-1.7
4,814,428	-		DZA65_RS22250	0.11	+0.0
4,814,428	-		DZA65_RS22250	0.11	+0.0
4,814,452	+		DZA65_RS22250	0.20	-1.1
4,814,452	+				+0.7
4,814,452	+		DZA65_RS22250	0.20	+0.2
4,814,474	+		DZA65_RS22250	0.29	-1.1
4,814,475	-		DZA65_RS22250	0.29	+0.6
4,814,506	-		DZA65_RS22250	0.40	+0.6
4,814,506	-		DZA65_RS22250	0.40	-0.1
4,814,512	+		DZA65_RS22250	0.43	-0.5
4,814,512	+		DZA65_RS22250	0.43	+0.2
4,814,512	+		DZA65_RS22250	0.43	-0.8
4,814,512	+		DZA65_RS22250	0.43	+0.3
4,814,512	+		DZA65_RS22250	0.43	-0.2
4,814,513	-		DZA65_RS22250	0.43	+0.9
4,814,513	-		DZA65_RS22250	0.43	-0.7
4,814,513	-		DZA65_RS22250	0.43	-0.2
4,814,513	-		DZA65_RS22250	0.43	-0.2
4,814,516	+		DZA65_RS22250	0.44	-0.1
4,814,516	+		DZA65_RS22250	0.44	-1.1
4,814,516	+		DZA65_RS22250	0.44	+0.3
4,814,516	+		DZA65_RS22250	0.44	-0.7
4,814,516	+		DZA65_RS22250	0.44	-0.2
4,814,516	+		DZA65_RS22250	0.44	-0.1
4,814,516	+		DZA65_RS22250	0.44	+0.3
4,814,517	-		DZA65_RS22250	0.44	-0.4
4,814,517	-		DZA65_RS22250	0.44	-2.8
4,814,517	-		DZA65_RS22250	0.44	-0.6
4,814,517	-		DZA65_RS22250	0.44	+1.5
4,814,517	-		DZA65_RS22250	0.44	+0.3
4,814,517	-		DZA65_RS22250	0.44	-2.1
4,814,517	-		DZA65_RS22250	0.44	-0.5
4,814,522	+		DZA65_RS22250	0.46	+0.7
4,814,522	+		DZA65_RS22250	0.46	-0.1
4,814,522	+		DZA65_RS22250	0.46	+0.1
4,814,523	-		DZA65_RS22250	0.47	-0.3
4,814,523	-		DZA65_RS22250	0.47	-1.0
4,814,649	+				+0.6
4,814,649	+				-0.5
4,814,649	+				-0.5
4,814,650	-				-0.7
4,814,650	-				-0.4
4,814,650	-				-0.5
4,814,668	-				+0.4
4,814,673	+				-0.3
4,814,673	+				-0.7
4,814,673	+				-0.2
4,814,674	-				-0.6
4,814,682	+				+0.2
4,814,682	+				+0.1
4,814,682	+				-0.2
4,814,682	+				-0.5
4,814,682	+				+0.7
4,814,683	-				-0.7
4,814,683	-				-0.6
4,814,683	-				-0.8
4,814,685	+				-0.5
4,814,696	+				-0.8
4,814,696	+				-1.5
4,814,700	+				+0.9
4,814,700	+				+0.0
4,814,700	+				+0.3
4,814,700	+				+2.5
4,814,700	+				+0.0
4,814,700	+				+0.2
4,814,700	+				-0.1
4,814,700	+				+0.6
4,814,700	+				+0.3
4,814,700	+				-0.1
4,814,700	+				-0.3
4,814,700	+				+0.0
4,814,701	-				+0.0
4,814,701	-				-0.0
4,814,701	-				-1.7
4,814,701	-				+0.0
4,814,701	-				+0.3
4,814,701	-				+1.3
4,814,701	-				-0.4
4,814,701	-				-0.1
4,814,701	-				+0.1
4,814,701	-				-0.6
4,814,701	-				+0.0
4,814,701	-				-1.1
4,814,701	-				-1.3
4,814,701	-				-2.4
4,814,701	-				-1.0
4,814,701	-				-0.7
4,814,701	-				-0.0
4,814,703	+				+0.4
4,814,731	+				-0.4
4,814,731	+				-0.2
4,814,732	-				+0.0
4,814,745	+				-0.5
4,814,745	+				-0.0
4,814,760	+				-0.2
4,814,761	-				-0.9
4,814,772	+				+0.0
4,814,773	-				-0.9
4,814,780	+				-1.1
4,814,913	+		DZA65_RS22255	0.24	+0.9
4,814,913	+		DZA65_RS22255	0.24	+1.9
4,814,913	+		DZA65_RS22255	0.24	-0.8
4,814,914	-		DZA65_RS22255	0.24	+0.3
4,814,914	-		DZA65_RS22255	0.24	-0.4
4,814,914	-		DZA65_RS22255	0.24	+0.3
4,814,973	+		DZA65_RS22255	0.34	+0.6
4,814,974	-		DZA65_RS22255	0.34	+0.7
4,814,974	-		DZA65_RS22255	0.34	-0.7
4,814,974	-		DZA65_RS22255	0.34	-0.3
4,814,976	+		DZA65_RS22255	0.35	-0.1
4,814,976	+		DZA65_RS22255	0.35	-0.9
4,815,020	+		DZA65_RS22255	0.42	+0.0
4,815,020	+		DZA65_RS22255	0.42	-0.1
4,815,020	+		DZA65_RS22255	0.42	-0.9
4,815,115	-		DZA65_RS22255	0.59	+0.3
4,815,131	-		DZA65_RS22255	0.62	-1.0
4,815,164	+		DZA65_RS22255	0.67	+0.3
4,815,164	+		DZA65_RS22255	0.67	-0.1
4,815,165	-		DZA65_RS22255	0.68	+0.4
4,815,165	-		DZA65_RS22255	0.68	-0.4
4,815,165	-		DZA65_RS22255	0.68	+0.3
4,815,167	+		DZA65_RS22255	0.68	-1.7
4,815,205	+		DZA65_RS22255	0.74	-0.7
4,815,205	+		DZA65_RS22255	0.74	-0.6
4,815,205	+		DZA65_RS22255	0.74	-0.3
4,815,205	+		DZA65_RS22255	0.74	-0.1
4,815,205	+		DZA65_RS22255	0.74	+0.9
4,815,205	+		DZA65_RS22255	0.74	+1.3
4,815,205	+		DZA65_RS22255	0.74	-0.3
4,815,206	-		DZA65_RS22255	0.75	-0.1
4,815,206	-		DZA65_RS22255	0.75	-0.1
4,815,206	-		DZA65_RS22255	0.75	+0.6
4,815,206	-				+0.0
4,815,251	+		DZA65_RS22255	0.82	+0.5
4,815,251	+		DZA65_RS22255	0.82	+0.8
4,815,251	+		DZA65_RS22255	0.82	+0.6
4,815,252	-		DZA65_RS22255	0.83	+1.7
4,815,252	-		DZA65_RS22255	0.83	-1.8
4,815,252	-		DZA65_RS22255	0.83	+1.2
4,815,252	-		DZA65_RS22255	0.83	-1.5
4,815,252	-		DZA65_RS22255	0.83	+0.1
4,815,252	-		DZA65_RS22255	0.83	+0.5
4,815,252	-		DZA65_RS22255	0.83	+0.5
4,815,287	+		DZA65_RS22255	0.89	+1.1
4,815,297	+				-0.3
4,815,298	-				-2.1
4,815,306	+				-0.5
4,815,307	-				-2.0
4,815,307	-				-2.1
4,815,352	+				-0.5
4,815,352	+				-0.3
4,815,352	+				+0.3
4,815,352	+				-0.0
4,815,353	-				-0.2
4,815,353	-				-0.3
4,815,353	-				+1.7
4,815,353	-				-2.3
4,815,353	-				+0.3
4,815,353	-				-0.9
4,815,353	-				+0.0
4,815,353	-				-0.6
4,815,354	+				+0.6
4,815,354	+				-0.1
4,815,355	-				+1.3
4,815,355	-				-1.0
4,815,355	-				-1.5
4,815,402	+		DZA65_RS22260	0.11	-0.7
4,815,403	-		DZA65_RS22260	0.11	+0.7
4,815,451	+		DZA65_RS22260	0.20	-0.1
4,815,463	+		DZA65_RS22260	0.23	+0.8
4,815,463	+		DZA65_RS22260	0.23	-0.9
4,815,463	+		DZA65_RS22260	0.23	-2.4
4,815,463	+		DZA65_RS22260	0.23	+0.3
4,815,464	-		DZA65_RS22260	0.23	+0.1
4,815,464	-		DZA65_RS22260	0.23	-0.4
4,815,464	-		DZA65_RS22260	0.23	-1.2
4,815,464	-		DZA65_RS22260	0.23	-0.8
4,815,464	-		DZA65_RS22260	0.23	+1.0
4,815,464	-		DZA65_RS22260	0.23	-2.6
4,815,464	-		DZA65_RS22260	0.23	-1.0
4,815,464	-		DZA65_RS22260	0.23	+0.3
4,815,476	-		DZA65_RS22260	0.25	+0.0
4,815,506	+		DZA65_RS22260	0.31	-0.6
4,815,506	+		DZA65_RS22260	0.31	+0.3
4,815,506	+		DZA65_RS22260	0.31	+0.0
4,815,506	+		DZA65_RS22260	0.31	-0.4
4,815,506	+		DZA65_RS22260	0.31	+0.0
4,815,506	+		DZA65_RS22260	0.31	-0.8
4,815,506	+		DZA65_RS22260	0.31	+1.7
4,815,506	+		DZA65_RS22260	0.31	+0.2
4,815,506	+		DZA65_RS22260	0.31	+0.6
4,815,507	-		DZA65_RS22260	0.31	-1.2
4,815,507	-		DZA65_RS22260	0.31	+0.3
4,815,507	-		DZA65_RS22260	0.31	+0.6
4,815,507	-		DZA65_RS22260	0.31	-0.8
4,815,507	-		DZA65_RS22260	0.31	-0.1
4,815,507	-		DZA65_RS22260	0.31	+0.6
4,815,507	-		DZA65_RS22260	0.31	-0.2
4,815,507	-		DZA65_RS22260	0.31	-1.1
4,815,550	+		DZA65_RS22260	0.39	-0.1
4,815,550	+		DZA65_RS22260	0.39	-0.3
4,815,550	+		DZA65_RS22260	0.39	-1.2
4,815,550	+		DZA65_RS22260	0.39	+0.1
4,815,553	+		DZA65_RS22260	0.40	+0.1
4,815,553	+		DZA65_RS22260	0.40	+1.0
4,815,553	+		DZA65_RS22260	0.40	+1.2
4,815,553	+		DZA65_RS22260	0.40	-0.2
4,815,553	+		DZA65_RS22260	0.40	+0.4
4,815,553	+		DZA65_RS22260	0.40	+0.3
4,815,553	+		DZA65_RS22260	0.40	-0.4
4,815,553	+		DZA65_RS22260	0.40	+1.0
4,815,553	+		DZA65_RS22260	0.40	+0.3
4,815,554	-		DZA65_RS22260	0.40	-0.7
4,815,554	-		DZA65_RS22260	0.40	+0.1
4,815,554	-		DZA65_RS22260	0.40	-0.2
4,815,605	+		DZA65_RS22260	0.49	+0.6
4,815,605	+		DZA65_RS22260	0.49	-1.4
4,815,605	+		DZA65_RS22260	0.49	+0.9
4,815,606	-		DZA65_RS22260	0.50	+0.7
4,815,606	-		DZA65_RS22260	0.50	-1.2
4,815,606	-		DZA65_RS22260	0.50	-0.5
4,815,654	+		DZA65_RS22260	0.59	+0.6
4,815,654	+		DZA65_RS22260	0.59	-1.3
4,815,655	-		DZA65_RS22260	0.59	-0.3
4,815,655	-		DZA65_RS22260	0.59	-0.1
4,815,655	-		DZA65_RS22260	0.59	-0.2
4,815,655	-		DZA65_RS22260	0.59	+0.5
4,815,736	+		DZA65_RS22260	0.74	-0.8
4,815,826	+				-0.9
4,815,877	+				-0.3
4,815,877	+				-0.5
4,815,886	+				+1.0
4,815,886	+				-0.7
4,815,886	+				+0.1
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4,815,887	-				-0.6
4,815,889	+				+0.2
4,815,889	+				-0.7
4,815,889	+				-0.7
4,815,889	+				-0.5
4,815,889	+				-1.0
4,815,889	+				-0.3
4,815,889	+				+0.8
4,815,889	+				-1.0
4,815,889	+				-1.1
4,815,889	+				-1.1
4,815,889	+				+0.6
4,815,889	+				-1.8
4,815,889	+				+1.1
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4,815,890	-				-0.5
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4,815,890	-				-0.8
4,815,890	-				-0.1
4,815,890	-				-1.5
4,815,890	-				-0.7
4,815,890	-				-1.5
4,815,890	-				-0.1
4,815,890	-				-0.8
4,815,890	-				+0.6
4,815,890	-				-1.1
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4,815,890	-				+0.7
4,815,892	+				+0.2
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4,815,893	-				-2.0
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4,815,893	-				-1.5
4,815,893	-				-0.3
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4,815,893	-				-1.5
4,815,920	-				-0.5