Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22225

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,806,737	+		DZA65_RS22220	0.47	-0.8
4,806,737	+		DZA65_RS22220	0.47	-0.4
4,806,737	+		DZA65_RS22220	0.47	+0.3
4,806,737	+		DZA65_RS22220	0.47	-2.1
4,806,737	+		DZA65_RS22220	0.47	+0.5
4,806,737	+		DZA65_RS22220	0.47	-0.3
4,806,737	+		DZA65_RS22220	0.47	-0.3
4,806,737	+		DZA65_RS22220	0.47	-0.8
4,806,738	-		DZA65_RS22220	0.47	-1.3
4,806,738	-		DZA65_RS22220	0.47	+0.2
4,806,738	-		DZA65_RS22220	0.47	-0.1
4,806,738	-		DZA65_RS22220	0.47	-2.1
4,806,738	-		DZA65_RS22220	0.47	-0.9
4,806,738	-		DZA65_RS22220	0.47	-0.3
4,806,738	-		DZA65_RS22220	0.47	+0.5
4,806,738	-		DZA65_RS22220	0.47	-0.7
4,806,738	-				-1.3
4,806,738	-		DZA65_RS22220	0.47	-0.4
4,806,746	-		DZA65_RS22220	0.48	-0.0
4,806,746	-		DZA65_RS22220	0.48	-1.1
4,806,750	+		DZA65_RS22220	0.48	+0.5
4,806,751	-		DZA65_RS22220	0.48	-1.1
4,806,751	-		DZA65_RS22220	0.48	-0.9
4,806,789	+		DZA65_RS22220	0.51	-0.8
4,806,827	+		DZA65_RS22220	0.54	+0.7
4,806,827	+		DZA65_RS22220	0.54	-1.8
4,806,827	+		DZA65_RS22220	0.54	-0.1
4,806,827	+		DZA65_RS22220	0.54	-0.1
4,806,827	+		DZA65_RS22220	0.54	-0.5
4,806,828	-		DZA65_RS22220	0.54	-0.3
4,806,828	-		DZA65_RS22220	0.54	-1.6
4,806,828	-		DZA65_RS22220	0.54	-1.3
4,806,828	-		DZA65_RS22220	0.54	-0.0
4,806,828	-		DZA65_RS22220	0.54	+0.3
4,806,828	-		DZA65_RS22220	0.54	-2.3
4,806,843	+		DZA65_RS22220	0.55	-0.2
4,806,844	-		DZA65_RS22220	0.55	-0.3
4,806,852	+		DZA65_RS22220	0.56	-0.5
4,806,853	-		DZA65_RS22220	0.56	-0.8
4,806,891	+		DZA65_RS22220	0.58	+1.2
4,806,891	+		DZA65_RS22220	0.58	+0.0
4,806,892	-		DZA65_RS22220	0.59	+0.8
4,806,936	+		DZA65_RS22220	0.62	+0.7
4,806,937	-		DZA65_RS22220	0.62	+1.2
4,807,208	+		DZA65_RS22220	0.82	-0.1
4,807,208	+		DZA65_RS22220	0.82	+0.7
4,807,208	+		DZA65_RS22220	0.82	-0.7
4,807,208	+		DZA65_RS22220	0.82	-0.5
4,807,208	+		DZA65_RS22220	0.82	-1.1
4,807,209	-		DZA65_RS22220	0.82	+0.3
4,807,209	-		DZA65_RS22220	0.82	+0.4
4,807,209	-		DZA65_RS22220	0.82	-0.5
4,807,245	+		DZA65_RS22220	0.84	+1.3
4,807,245	+		DZA65_RS22220	0.84	+0.1
4,807,245	+		DZA65_RS22220	0.84	-0.5
4,807,245	+		DZA65_RS22220	0.84	-2.0
4,807,246	-		DZA65_RS22220	0.84	+0.3
4,807,246	-		DZA65_RS22220	0.84	+0.2
4,807,246	-		DZA65_RS22220	0.84	+0.3
4,807,246	-		DZA65_RS22220	0.84	-2.8
4,807,262	+		DZA65_RS22220	0.85	-1.7
4,807,262	+		DZA65_RS22220	0.85	+0.3
4,807,262	+		DZA65_RS22220	0.85	-0.2
4,807,262	+		DZA65_RS22220	0.85	+1.3
4,807,262	+		DZA65_RS22220	0.85	-0.3
4,807,263	-		DZA65_RS22220	0.86	+0.0
4,807,263	-		DZA65_RS22220	0.86	-1.3
4,807,263	-		DZA65_RS22220	0.86	-1.0
4,807,287	+		DZA65_RS22220	0.87	-0.2
4,807,295	+		DZA65_RS22220	0.88	-1.1
4,807,295	+		DZA65_RS22220	0.88	-0.2
4,807,295	+		DZA65_RS22220	0.88	-1.1
4,807,296	-		DZA65_RS22220	0.88	-1.0
4,807,355	+				-1.0
4,807,355	+				-0.9
4,807,355	+				+0.2
4,807,355	+				+0.8
4,807,355	+				-0.1
4,807,355	+				+0.2
4,807,355	+				-1.3
4,807,355	+				-1.7
4,807,355	+				+0.1
4,807,355	+				+0.6
4,807,355	+				-1.1
4,807,356	-				+0.1
4,807,356	-				+0.0
4,807,356	-				-0.2
4,807,356	-				-0.5
4,807,356	-				-2.2
4,807,356	-				+0.6
4,807,356	-				+0.9
4,807,356	-				+0.0
4,807,356	-				-0.2
4,807,356	-				+1.3
4,807,380	+				-0.5
4,807,381	-				-0.1
4,807,385	+				-0.3
4,807,385	+				-0.1
4,807,386	-				+1.0
4,807,386	-				-1.4
4,807,386	-				+0.3
4,807,394	+				+0.4
4,807,395	-				-0.1
4,807,409	+				-1.7
4,807,409	+				+0.1
4,807,409	+				-0.4
4,807,409	+				-0.2
4,807,410	-				+0.8
4,807,415	+				-0.3
4,807,415	+				-1.5
4,807,415	+				-0.5
4,807,415	+				-1.4
4,807,415	+				+0.3
4,807,415	+				-0.3
4,807,416	-				-0.2
4,807,416	-				+0.3
4,807,432	+				-2.8
4,807,432	+				+0.3
4,807,432	+				-0.3
4,807,432	+				+0.4
4,807,433	-				+0.2
4,807,577	+				+0.7
4,807,611	+				+0.0
4,807,612	-				+0.5
4,807,617	+				-0.6
4,807,617	+				-1.5
4,807,645	-				-1.5
4,807,645	-				-3.2
4,807,663	+				+1.3
4,807,663	+				-1.0
4,807,664	-				-0.3
4,807,666	+				+0.0
4,807,666	+				-0.5
4,807,667	-				+2.7
4,807,667	-				+0.3
4,807,754	-		DZA65_RS22225	0.21	-1.0
4,807,932	-		DZA65_RS22225	0.54	+0.0
4,807,979	-		DZA65_RS22225	0.63	-0.3
4,808,194	-				+0.2
4,808,206	+				-1.4
4,808,206	+				-1.9
4,808,206	+				-0.7
4,808,206	+				+0.0
4,808,206	+				-0.4
4,808,206	+				-1.0
4,808,206	+				-2.1
4,808,206	+				+0.6
4,808,206	+				-0.3
4,808,207	-				-1.1
4,808,207	-				-0.4
4,808,207	-				-0.4
4,808,207	-				-0.9
4,808,207	-				-0.4
4,808,207	-				-0.5
4,808,207	-				-0.3
4,808,207	-				+0.0
4,808,207	-				-0.1
4,808,208	+				+0.0
4,808,208	+				+0.7
4,808,230	+				+0.9
4,808,231	-				-0.2
4,808,231	-				-0.2
4,808,282	-				-1.4
4,808,298	-				-1.0
4,808,326	+		DZA65_RS22230	0.13	-0.5
4,808,327	-		DZA65_RS22230	0.13	+0.4
4,808,355	+		DZA65_RS22230	0.17	-0.7
4,808,356	-		DZA65_RS22230	0.17	-1.2
4,808,357	+		DZA65_RS22230	0.17	-1.4
4,808,357	+		DZA65_RS22230	0.17	-0.4
4,808,357	+		DZA65_RS22230	0.17	+0.2
4,808,369	+		DZA65_RS22230	0.18	+0.5
4,808,369	+		DZA65_RS22230	0.18	-0.2
4,809,042	+				-0.8
4,809,042	+				+0.2
4,809,042	+				+0.4
4,809,043	-				-0.4
4,809,045	+				-0.3
4,809,045	+				-1.0
4,809,045	+				-0.8
4,809,045	+				-0.3
4,809,045	+				-1.6
4,809,045	+				+0.9
4,809,045	+				+0.1
4,809,046	-				+0.3
4,809,046	-				-0.3
4,809,046	-				-0.1
4,809,046	-				+1.3
4,809,046	-				-0.8
4,809,046	-				-0.7
4,809,046	-				+1.9
4,809,089	-				-0.5
4,809,099	+				-0.5
4,809,099	+				-0.3
4,809,100	-				+1.3
4,809,100	-				-0.1
4,809,100	-				-0.8
4,809,115	+				-1.9
4,809,115	+				-0.3
4,809,115	+				+1.0
4,809,115	+				+1.1
4,809,115	+				-1.0
4,809,115	+				-2.0
4,809,115	+				+0.7
4,809,115	+				-0.3
4,809,115	+				-1.7
4,809,115	+				+0.5
4,809,116	-				+1.7
4,809,116	-				-0.2
4,809,116	-				-1.3
4,809,116	-				-0.0
4,809,116	-				+0.4
4,809,116	-				+0.6
4,809,154	-				+0.0