Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21065

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,553,436	+				+0.0
4,553,436	+				+0.7
4,553,436	+				+0.4
4,553,436	+				-0.6
4,553,436	+				+0.5
4,553,436	+				-0.2
4,553,436	+				-0.6
4,553,436	+				-1.1
4,553,437	-				+0.4
4,553,437	-				+0.8
4,553,437	-				+0.3
4,553,512	+				-1.1
4,553,548	+				+1.5
4,553,548	+				-0.5
4,553,549	-				-1.1
4,553,549	-				+0.9
4,553,549	-				-0.1
4,553,559	-				-0.4
4,553,559	-				-0.4
4,553,559	-				+0.3
4,553,559	-				-0.4
4,553,559	-				+0.1
4,553,559	-				-1.7
4,553,559	-				-0.3
4,553,581	+				-0.7
4,553,582	-				-1.1
4,553,601	+				+0.7
4,553,601	+				-1.1
4,553,601	+				+0.7
4,553,601	+				+0.1
4,553,601	+				-1.1
4,553,601	+				-0.3
4,553,601	+				-0.1
4,553,601	+				-1.2
4,553,601	+				+0.5
4,553,601	+				+0.1
4,553,602	-				+0.7
4,553,602	-				+0.7
4,553,602	-				-0.7
4,553,602	-				-0.1
4,553,602	-				-0.3
4,553,602	-				-0.4
4,553,602	-				-0.5
4,553,602	-				+0.7
4,553,602	-				-0.7
4,553,602	-				+0.8
4,553,602	-				+0.5
4,553,602	-				+0.7
4,553,602	-				+2.0
4,553,603	+				+0.3
4,553,603	+				-0.3
4,553,603	+				+0.0
4,553,603	+				-1.9
4,553,603	+				+0.5
4,553,603	+				-0.1
4,553,603	+				-1.4
4,553,603	+				+0.6
4,553,603	+				-0.0
4,553,603	+				-0.5
4,553,603	+				+0.9
4,553,603	+				-0.9
4,553,603	+				-0.2
4,553,603	+				-1.8
4,553,603	+				+1.3
4,553,603	+				+0.3
4,553,603	+				+0.5
4,553,603	+				+1.1
4,553,603	+				+0.3
4,553,603	+				+0.2
4,553,604	-				+0.3
4,553,604	-				-0.1
4,553,604	-				-1.0
4,553,604	-				-0.3
4,553,604	-				+0.1
4,553,604	-				+0.0
4,553,628	+				+1.0
4,553,628	+				+0.7
4,553,682	-		DZA65_RS21060	0.14	+0.8
4,553,726	+		DZA65_RS21060	0.19	+0.4
4,553,726	+		DZA65_RS21060	0.19	+0.2
4,553,727	-		DZA65_RS21060	0.19	+0.0
4,553,727	-		DZA65_RS21060	0.19	-0.7
4,553,820	+		DZA65_RS21060	0.29	+1.0
4,553,820	+		DZA65_RS21060	0.29	+0.5
4,553,820	+		DZA65_RS21060	0.29	+0.8
4,553,820	+		DZA65_RS21060	0.29	+0.0
4,553,820	+		DZA65_RS21060	0.29	-0.7
4,553,820	+		DZA65_RS21060	0.29	+0.2
4,553,820	+		DZA65_RS21060	0.29	-0.3
4,553,820	+		DZA65_RS21060	0.29	+1.3
4,553,820	+		DZA65_RS21060	0.29	+1.0
4,553,821	-		DZA65_RS21060	0.29	+0.2
4,553,821	-				-0.1
4,553,821	-		DZA65_RS21060	0.29	-1.3
4,553,840	+		DZA65_RS21060	0.31	+0.4
4,553,846	+		DZA65_RS21060	0.32	+0.3
4,553,846	+		DZA65_RS21060	0.32	-0.1
4,553,846	+		DZA65_RS21060	0.32	-0.4
4,553,846	+		DZA65_RS21060	0.32	+0.3
4,553,846	+		DZA65_RS21060	0.32	+1.1
4,553,846	+		DZA65_RS21060	0.32	-0.7
4,553,846	+		DZA65_RS21060	0.32	-0.2
4,553,846	+		DZA65_RS21060	0.32	-0.1
4,553,846	+		DZA65_RS21060	0.32	-0.9
4,553,847	-		DZA65_RS21060	0.32	-1.0
4,553,847	-		DZA65_RS21060	0.32	+0.5
4,553,847	-		DZA65_RS21060	0.32	-0.0
4,553,847	-		DZA65_RS21060	0.32	-1.3
4,553,847	-		DZA65_RS21060	0.32	-0.2
4,553,847	-		DZA65_RS21060	0.32	+0.5
4,553,847	-		DZA65_RS21060	0.32	-1.2
4,553,847	-		DZA65_RS21060	0.32	-1.7
4,553,847	-		DZA65_RS21060	0.32	+0.4
4,553,847	-		DZA65_RS21060	0.32	-0.4
4,553,847	-		DZA65_RS21060	0.32	-0.3
4,553,847	-		DZA65_RS21060	0.32	-1.4
4,553,847	-		DZA65_RS21060	0.32	-1.1
4,553,847	-		DZA65_RS21060	0.32	-0.8
4,553,847	-		DZA65_RS21060	0.32	-1.9
4,553,868	+		DZA65_RS21060	0.34	-0.1
4,553,869	-		DZA65_RS21060	0.34	+1.5
4,553,869	-		DZA65_RS21060	0.34	+0.4
4,553,972	-		DZA65_RS21060	0.45	+2.3
4,554,017	+		DZA65_RS21060	0.50	-0.1
4,554,103	+		DZA65_RS21060	0.60	+0.8
4,554,103	+		DZA65_RS21060	0.60	-1.2
4,554,104	-		DZA65_RS21060	0.60	-0.7
4,554,104	-		DZA65_RS21060	0.60	+0.1
4,554,104	-		DZA65_RS21060	0.60	-0.6
4,554,129	+		DZA65_RS21060	0.63	+0.5
4,554,130	-		DZA65_RS21060	0.63	-0.4
4,554,242	+		DZA65_RS21060	0.75	-0.1
4,554,242	+		DZA65_RS21060	0.75	-0.4
4,554,242	+		DZA65_RS21060	0.75	-0.1
4,554,242	+		DZA65_RS21060	0.75	-0.1
4,554,243	-		DZA65_RS21060	0.75	+0.1
4,554,243	-		DZA65_RS21060	0.75	-0.1
4,554,272	+		DZA65_RS21060	0.78	+0.8
4,554,272	+		DZA65_RS21060	0.78	+0.4
4,554,272	+		DZA65_RS21060	0.78	-0.5
4,554,273	-		DZA65_RS21060	0.78	-1.9
4,554,273	-		DZA65_RS21060	0.78	-0.5
4,554,292	-		DZA65_RS21060	0.80	-0.5
4,554,292	-		DZA65_RS21060	0.80	+0.4
4,554,333	+		DZA65_RS21060	0.85	-0.5
4,554,417	+				-0.3
4,554,417	+				+0.1
4,554,417	+				-0.1
4,554,417	+				-0.3
4,554,417	+				+0.7
4,554,417	+				+0.6
4,554,417	+				-1.7
4,554,418	-				+0.5
4,554,418	-				+0.0
4,554,420	-				+1.0
4,554,466	+				-0.1
4,554,466	+				-0.3
4,554,466	+				-0.2
4,554,466	+				+0.2
4,554,466	+				-1.7
4,554,466	+				+0.6
4,554,466	+				-0.1
4,554,466	+				-0.3
4,554,466	+				-0.7
4,554,466	+				+1.9
4,554,467	-				-1.1
4,554,467	-				-0.5
4,554,467	-				-0.6
4,554,467	-				+0.2
4,554,467	-				+1.3
4,554,467	-				+0.0
4,554,467	-				-0.2
4,554,467	-				-1.6
4,554,467	-				-1.7
4,554,467	-				+0.2
4,554,467	-				-0.7
4,554,467	-				+1.3
4,554,467	-				+0.5
4,554,467	-				+3.9
4,554,467	-				+0.1
4,554,467	-				-0.1
4,554,467	-				+1.0
4,554,486	-				-1.3
4,554,573	-		DZA65_RS21065	0.13	-1.5
4,554,605	-		DZA65_RS21065	0.16	+0.0
4,554,680	+		DZA65_RS21065	0.23	-2.1
4,554,681	-		DZA65_RS21065	0.24	+0.4
4,554,772	+		DZA65_RS21065	0.32	+0.4
4,554,772	+		DZA65_RS21065	0.32	+1.1
4,554,787	-		DZA65_RS21065	0.34	+1.3
4,554,804	+		DZA65_RS21065	0.35	-0.9
4,554,804	+		DZA65_RS21065	0.35	-1.5
4,554,804	+		DZA65_RS21065	0.35	+0.1
4,554,804	+		DZA65_RS21065	0.35	+0.4
4,554,804	+		DZA65_RS21065	0.35	-0.2
4,554,804	+		DZA65_RS21065	0.35	-0.5
4,554,804	+		DZA65_RS21065	0.35	-0.2
4,554,804	+		DZA65_RS21065	0.35	+0.6
4,554,805	-		DZA65_RS21065	0.35	-2.6
4,554,805	-		DZA65_RS21065	0.35	-0.3
4,554,805	-		DZA65_RS21065	0.35	-0.1
4,554,805	-		DZA65_RS21065	0.35	+0.3
4,554,805	-		DZA65_RS21065	0.35	-1.0
4,554,805	-		DZA65_RS21065	0.35	-0.3
4,554,805	-		DZA65_RS21065	0.35	+0.0
4,554,805	-		DZA65_RS21065	0.35	-0.4
4,554,805	-		DZA65_RS21065	0.35	-1.9
4,554,828	+		DZA65_RS21065	0.37	+0.8
4,554,828	+		DZA65_RS21065	0.37	+1.0
4,554,828	+		DZA65_RS21065	0.37	-0.7
4,554,828	+		DZA65_RS21065	0.37	-0.4
4,554,828	+		DZA65_RS21065	0.37	-0.7
4,554,828	+		DZA65_RS21065	0.37	-0.9
4,554,828	+		DZA65_RS21065	0.37	-0.6
4,554,828	+		DZA65_RS21065	0.37	-1.5
4,554,828	+		DZA65_RS21065	0.37	-1.4
4,554,828	+		DZA65_RS21065	0.37	+0.0
4,554,828	+		DZA65_RS21065	0.37	-0.2
4,554,829	-		DZA65_RS21065	0.37	-0.4
4,554,829	-		DZA65_RS21065	0.37	-1.5
4,554,829	-		DZA65_RS21065	0.37	+0.3
4,554,829	-		DZA65_RS21065	0.37	-1.3
4,554,829	-		DZA65_RS21065	0.37	-0.5
4,554,829	-		DZA65_RS21065	0.37	-0.5
4,554,829	-		DZA65_RS21065	0.37	-0.6
4,554,829	-		DZA65_RS21065	0.37	-0.1
4,554,829	-		DZA65_RS21065	0.37	+0.3
4,554,832	-				-0.3
4,554,832	-		DZA65_RS21065	0.38	+1.5
4,554,832	-		DZA65_RS21065	0.38	-0.4
4,554,875	+		DZA65_RS21065	0.42	+0.8
4,554,875	+		DZA65_RS21065	0.42	-0.3
4,554,875	+		DZA65_RS21065	0.42	-0.3
4,554,875	+		DZA65_RS21065	0.42	-0.1
4,554,905	+		DZA65_RS21065	0.45	-0.1
4,554,905	+		DZA65_RS21065	0.45	+0.3
4,554,905	+		DZA65_RS21065	0.45	-0.7
4,554,905	+		DZA65_RS21065	0.45	-0.8
4,554,906	-		DZA65_RS21065	0.45	-0.0
4,554,971	+		DZA65_RS21065	0.51	-0.4
4,555,039	-		DZA65_RS21065	0.57	-0.8
4,555,049	-		DZA65_RS21065	0.58	+0.6
4,555,049	-		DZA65_RS21065	0.58	-0.3
4,555,049	-		DZA65_RS21065	0.58	-0.9
4,555,164	-		DZA65_RS21065	0.69	-0.0
4,555,164	-		DZA65_RS21065	0.69	-0.5
4,555,165	+		DZA65_RS21065	0.69	+0.7
4,555,165	+		DZA65_RS21065	0.69	-2.2
4,555,165	+		DZA65_RS21065	0.69	-0.3
4,555,165	+		DZA65_RS21065	0.69	-0.7
4,555,166	-		DZA65_RS21065	0.69	-1.3
4,555,220	+		DZA65_RS21065	0.74	-0.6
4,555,220	+		DZA65_RS21065	0.74	-0.2
4,555,220	+		DZA65_RS21065	0.74	-0.8
4,555,220	+		DZA65_RS21065	0.74	-0.1
4,555,220	+		DZA65_RS21065	0.74	-0.2
4,555,221	-		DZA65_RS21065	0.75	-0.1
4,555,221	-		DZA65_RS21065	0.75	+0.4
4,555,221	-		DZA65_RS21065	0.75	-0.3
4,555,221	-		DZA65_RS21065	0.75	-2.1
4,555,221	-		DZA65_RS21065	0.75	+0.4
4,555,221	-		DZA65_RS21065	0.75	+0.3
4,555,224	+		DZA65_RS21065	0.75	-0.7
4,555,224	+		DZA65_RS21065	0.75	-0.2
4,555,224	+		DZA65_RS21065	0.75	-1.9
4,555,225	-		DZA65_RS21065	0.75	-1.3
4,555,225	-		DZA65_RS21065	0.75	+0.2
4,555,225	-		DZA65_RS21065	0.75	-1.3
4,555,225	-		DZA65_RS21065	0.75	-0.7
4,555,225	-		DZA65_RS21065	0.75	+0.5
4,555,225	-		DZA65_RS21065	0.75	-0.1
4,555,225	-		DZA65_RS21065	0.75	-0.9
4,555,225	-		DZA65_RS21065	0.75	+0.5
4,555,225	-		DZA65_RS21065	0.75	-0.3
4,555,308	-		DZA65_RS21065	0.83	+0.7
4,555,308	-		DZA65_RS21065	0.83	-0.3
4,555,334	+		DZA65_RS21065	0.85	-0.8
4,555,411	+				+0.4
4,555,411	+				+0.3
4,555,411	+				-1.4
4,555,411	+				-2.1
4,555,412	-				+0.3
4,555,412	-				+0.5
4,555,412	-				+1.0
4,555,412	-				+1.1
4,555,504	+				+0.2
4,555,504	+				-0.3
4,555,504	+				-1.2
4,555,504	+				+0.4
4,555,504	+				-0.0
4,555,505	-				-0.6
4,555,505	-				-1.3
4,555,505	-				+0.8
4,555,505	-				-0.2
4,555,572	+				-0.1
4,555,572	+				+1.3
4,555,572	+				-1.7
4,555,572	+				-0.7
4,555,572	+				-1.2
4,555,572	+				-0.2
4,555,572	+				-0.5
4,555,572	+				-0.7
4,555,572	+				-1.2
4,555,572	+				-0.0
4,555,572	+				+0.3
4,555,572	+				-0.7
4,555,573	-				+0.6
4,555,573	-				-1.0
4,555,573	-				-0.1
4,555,573	-				-0.4
4,555,573	-				-2.4
4,555,573	-				+0.8
4,555,573	-				-1.0
4,555,573	-				-0.1
4,555,573	-				-0.9
4,555,573	-				-0.3
4,555,573	-				-0.1
4,555,573	-				-1.1
4,555,573	-				+0.3
4,555,573	-				+0.1
4,555,690	-				-1.7
4,555,695	+				-0.3
4,555,725	-				-1.5
4,555,783	+		DZA65_RS21075	0.13	-1.9
4,555,784	-		DZA65_RS21075	0.13	-1.7
4,555,784	-		DZA65_RS21075	0.13	+0.1
4,555,788	+		DZA65_RS21075	0.13	-1.6
4,555,789	-		DZA65_RS21075	0.13	-0.3
4,556,103	+		DZA65_RS21075	0.46	-0.1
4,556,272	-		DZA65_RS21075	0.64	+0.9
4,556,310	+		DZA65_RS21075	0.68	-0.7
4,556,310	+		DZA65_RS21075	0.68	+1.3
4,556,376	+		DZA65_RS21075	0.75	-0.3