Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS20960 and DZA65_RS20965 are separated by 248 nucleotides DZA65_RS20965 and DZA65_RS20970 are separated by 10 nucleotides
DZA65_RS20960: DZA65_RS20960 - gluconate transporter, at 4,530,957 to 4,532,273
_RS20960
DZA65_RS20965: DZA65_RS20965 - gluconokinase, at 4,532,522 to 4,533,040
_RS20965
DZA65_RS20970: DZA65_RS20970 - gluconate operon transcriptional repressor GntR, at 4,533,051 to 4,534,049
_RS20970
Position (kb) 4532
4533
4534 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4531.646 kb on + strand, within DZA65_RS20960 at 4531.648 kb on + strand, within DZA65_RS20960 at 4531.648 kb on + strand, within DZA65_RS20960 at 4531.648 kb on + strand, within DZA65_RS20960 at 4531.648 kb on + strand, within DZA65_RS20960 at 4531.648 kb on + strand, within DZA65_RS20960 at 4531.648 kb on + strand, within DZA65_RS20960 at 4531.648 kb on + strand, within DZA65_RS20960 at 4531.649 kb on - strand, within DZA65_RS20960 at 4531.649 kb on - strand, within DZA65_RS20960 at 4531.649 kb on - strand, within DZA65_RS20960 at 4531.649 kb on - strand, within DZA65_RS20960 at 4531.649 kb on - strand, within DZA65_RS20960 at 4531.649 kb on - strand, within DZA65_RS20960 at 4531.649 kb on - strand, within DZA65_RS20960 at 4531.649 kb on - strand, within DZA65_RS20960 at 4531.649 kb on - strand, within DZA65_RS20960 at 4531.716 kb on + strand, within DZA65_RS20960 at 4531.716 kb on + strand, within DZA65_RS20960 at 4531.716 kb on + strand, within DZA65_RS20960 at 4531.717 kb on - strand, within DZA65_RS20960 at 4531.739 kb on + strand, within DZA65_RS20960 at 4531.740 kb on - strand, within DZA65_RS20960 at 4531.744 kb on + strand, within DZA65_RS20960 at 4531.744 kb on + strand, within DZA65_RS20960 at 4531.744 kb on + strand, within DZA65_RS20960 at 4531.744 kb on + strand, within DZA65_RS20960 at 4531.745 kb on - strand, within DZA65_RS20960 at 4531.861 kb on + strand, within DZA65_RS20960 at 4531.861 kb on + strand, within DZA65_RS20960 at 4531.862 kb on - strand, within DZA65_RS20960 at 4531.862 kb on - strand, within DZA65_RS20960 at 4531.862 kb on - strand, within DZA65_RS20960 at 4531.933 kb on + strand, within DZA65_RS20960 at 4531.933 kb on + strand, within DZA65_RS20960 at 4531.933 kb on + strand, within DZA65_RS20960 at 4531.933 kb on + strand, within DZA65_RS20960 at 4531.933 kb on + strand, within DZA65_RS20960 at 4531.933 kb on + strand, within DZA65_RS20960 at 4531.933 kb on + strand, within DZA65_RS20960 at 4531.934 kb on - strand, within DZA65_RS20960 at 4531.934 kb on - strand, within DZA65_RS20960 at 4531.934 kb on - strand, within DZA65_RS20960 at 4531.934 kb on - strand, within DZA65_RS20960 at 4531.934 kb on - strand, within DZA65_RS20960 at 4531.934 kb on - strand, within DZA65_RS20960 at 4531.934 kb on - strand, within DZA65_RS20960 at 4531.934 kb on - strand, within DZA65_RS20960 at 4531.934 kb on - strand, within DZA65_RS20960 at 4531.934 kb on - strand, within DZA65_RS20960 at 4531.934 kb on - strand, within DZA65_RS20960 at 4531.934 kb on - strand, within DZA65_RS20960 at 4531.985 kb on + strand, within DZA65_RS20960 at 4531.985 kb on + strand, within DZA65_RS20960 at 4531.985 kb on + strand, within DZA65_RS20960 at 4531.985 kb on + strand, within DZA65_RS20960 at 4531.985 kb on + strand, within DZA65_RS20960 at 4531.986 kb on - strand, within DZA65_RS20960 at 4531.986 kb on - strand, within DZA65_RS20960 at 4531.986 kb on - strand, within DZA65_RS20960 at 4532.025 kb on - strand, within DZA65_RS20960 at 4532.198 kb on + strand at 4532.199 kb on - strand at 4532.199 kb on - strand at 4532.214 kb on - strand at 4532.274 kb on - strand at 4532.373 kb on + strand at 4532.373 kb on + strand at 4532.374 kb on - strand at 4532.378 kb on + strand at 4532.378 kb on + strand at 4532.378 kb on + strand at 4532.378 kb on + strand at 4532.378 kb on + strand at 4532.379 kb on - strand at 4532.379 kb on - strand at 4532.379 kb on - strand at 4532.379 kb on - strand at 4532.379 kb on - strand at 4532.379 kb on - strand at 4532.379 kb on - strand at 4532.415 kb on + strand at 4532.415 kb on + strand at 4532.415 kb on + strand at 4532.415 kb on + strand at 4532.415 kb on + strand at 4532.415 kb on + strand at 4532.415 kb on + strand at 4532.415 kb on + strand at 4532.415 kb on + strand at 4532.416 kb on - strand at 4532.416 kb on - strand at 4532.416 kb on - strand at 4532.417 kb on + strand at 4532.417 kb on + strand at 4532.417 kb on + strand at 4532.417 kb on + strand at 4532.417 kb on + strand at 4532.417 kb on + strand at 4532.418 kb on - strand at 4532.418 kb on - strand at 4532.418 kb on - strand at 4532.418 kb on - strand at 4532.418 kb on - strand at 4532.418 kb on - strand at 4532.493 kb on - strand at 4532.497 kb on + strand at 4532.510 kb on - strand at 4532.521 kb on + strand at 4532.536 kb on + strand at 4532.536 kb on + strand at 4532.536 kb on + strand at 4532.536 kb on + strand at 4532.536 kb on + strand at 4532.536 kb on + strand at 4532.536 kb on + strand at 4532.537 kb on - strand at 4532.539 kb on + strand at 4532.539 kb on + strand at 4532.726 kb on + strand, within DZA65_RS20965 at 4532.726 kb on + strand, within DZA65_RS20965 at 4532.740 kb on + strand, within DZA65_RS20965 at 4532.741 kb on - strand, within DZA65_RS20965 at 4532.759 kb on - strand, within DZA65_RS20965 at 4532.890 kb on + strand, within DZA65_RS20965 at 4532.891 kb on - strand, within DZA65_RS20965 at 4532.891 kb on - strand, within DZA65_RS20965 at 4532.891 kb on - strand, within DZA65_RS20965 at 4533.053 kb on - strand at 4533.072 kb on + strand at 4533.072 kb on + strand at 4533.072 kb on + strand at 4533.073 kb on - strand at 4533.073 kb on - strand at 4533.165 kb on - strand, within DZA65_RS20970 at 4533.377 kb on + strand, within DZA65_RS20970 at 4533.379 kb on + strand, within DZA65_RS20970 at 4533.380 kb on - strand, within DZA65_RS20970 at 4533.409 kb on + strand, within DZA65_RS20970 at 4533.459 kb on + strand, within DZA65_RS20970 at 4533.460 kb on - strand, within DZA65_RS20970 at 4533.463 kb on - strand, within DZA65_RS20970 at 4533.467 kb on + strand, within DZA65_RS20970 at 4533.467 kb on + strand, within DZA65_RS20970 at 4533.468 kb on - strand, within DZA65_RS20970 at 4533.468 kb on - strand, within DZA65_RS20970 at 4533.468 kb on - strand, within DZA65_RS20970 at 4533.468 kb on - strand, within DZA65_RS20970 at 4533.468 kb on - strand, within DZA65_RS20970 at 4533.524 kb on + strand, within DZA65_RS20970 at 4533.524 kb on + strand, within DZA65_RS20970 at 4533.524 kb on + strand, within DZA65_RS20970 at 4533.524 kb on + strand, within DZA65_RS20970 at 4533.524 kb on + strand, within DZA65_RS20970 at 4533.524 kb on + strand, within DZA65_RS20970 at 4533.524 kb on + strand, within DZA65_RS20970 at 4533.524 kb on + strand, within DZA65_RS20970 at 4533.524 kb on + strand, within DZA65_RS20970 at 4533.524 kb on + strand, within DZA65_RS20970 at 4533.525 kb on - strand, within DZA65_RS20970 at 4533.525 kb on - strand, within DZA65_RS20970 at 4533.526 kb on + strand, within DZA65_RS20970 at 4533.526 kb on + strand, within DZA65_RS20970 at 4533.526 kb on + strand, within DZA65_RS20970 at 4533.526 kb on + strand, within DZA65_RS20970 at 4533.527 kb on - strand, within DZA65_RS20970 at 4533.527 kb on - strand, within DZA65_RS20970 at 4533.527 kb on - strand, within DZA65_RS20970 at 4533.527 kb on - strand, within DZA65_RS20970 at 4533.527 kb on - strand, within DZA65_RS20970 at 4533.603 kb on + strand, within DZA65_RS20970 at 4533.603 kb on + strand, within DZA65_RS20970 at 4533.603 kb on + strand, within DZA65_RS20970 at 4533.603 kb on + strand, within DZA65_RS20970 at 4533.604 kb on - strand, within DZA65_RS20970 at 4533.648 kb on - strand, within DZA65_RS20970 at 4533.694 kb on + strand, within DZA65_RS20970 at 4533.694 kb on + strand, within DZA65_RS20970 at 4533.745 kb on + strand, within DZA65_RS20970 at 4533.746 kb on - strand, within DZA65_RS20970 at 4533.746 kb on - strand, within DZA65_RS20970 at 4533.746 kb on - strand, within DZA65_RS20970 at 4533.746 kb on - strand, within DZA65_RS20970 at 4533.767 kb on - strand, within DZA65_RS20970 at 4533.901 kb on + strand, within DZA65_RS20970 at 4533.974 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,531,646 + DZA65_RS20960 0.52 -2.4 4,531,648 + DZA65_RS20960 0.52 -0.6 4,531,648 + DZA65_RS20960 0.52 -0.5 4,531,648 + DZA65_RS20960 0.52 +0.5 4,531,648 + DZA65_RS20960 0.52 +0.5 4,531,648 + DZA65_RS20960 0.52 -0.6 4,531,648 + DZA65_RS20960 0.52 -0.7 4,531,648 + DZA65_RS20960 0.52 +0.3 4,531,649 - DZA65_RS20960 0.53 +0.5 4,531,649 - DZA65_RS20960 0.53 -0.0 4,531,649 - DZA65_RS20960 0.53 -1.3 4,531,649 - DZA65_RS20960 0.53 -0.8 4,531,649 - DZA65_RS20960 0.53 +0.1 4,531,649 - DZA65_RS20960 0.53 -0.1 4,531,649 - DZA65_RS20960 0.53 -0.3 4,531,649 - DZA65_RS20960 0.53 -0.0 4,531,649 - DZA65_RS20960 0.53 -0.2 4,531,716 + DZA65_RS20960 0.58 +0.7 4,531,716 + DZA65_RS20960 0.58 +0.4 4,531,716 + DZA65_RS20960 0.58 -0.2 4,531,717 - DZA65_RS20960 0.58 +0.3 4,531,739 + DZA65_RS20960 0.59 -0.3 4,531,740 - DZA65_RS20960 0.59 -0.4 4,531,744 + DZA65_RS20960 0.60 +0.7 4,531,744 + DZA65_RS20960 0.60 +0.7 4,531,744 + DZA65_RS20960 0.60 -0.2 4,531,744 + DZA65_RS20960 0.60 -1.2 4,531,745 - DZA65_RS20960 0.60 +0.1 4,531,861 + DZA65_RS20960 0.69 +0.7 4,531,861 + DZA65_RS20960 0.69 +0.3 4,531,862 - DZA65_RS20960 0.69 -0.0 4,531,862 - DZA65_RS20960 0.69 +0.2 4,531,862 - DZA65_RS20960 0.69 -0.7 4,531,933 + DZA65_RS20960 0.74 -0.1 4,531,933 + DZA65_RS20960 0.74 -1.2 4,531,933 + DZA65_RS20960 0.74 -0.3 4,531,933 + DZA65_RS20960 0.74 -1.6 4,531,933 + DZA65_RS20960 0.74 -1.9 4,531,933 + DZA65_RS20960 0.74 +0.3 4,531,933 + DZA65_RS20960 0.74 +0.1 4,531,934 - DZA65_RS20960 0.74 +0.5 4,531,934 - DZA65_RS20960 0.74 +3.1 4,531,934 - DZA65_RS20960 0.74 -0.9 4,531,934 - DZA65_RS20960 0.74 +0.1 4,531,934 - DZA65_RS20960 0.74 -0.3 4,531,934 - DZA65_RS20960 0.74 -1.3 4,531,934 - DZA65_RS20960 0.74 -1.1 4,531,934 - DZA65_RS20960 0.74 +0.3 4,531,934 - DZA65_RS20960 0.74 -0.0 4,531,934 - DZA65_RS20960 0.74 -1.7 4,531,934 - DZA65_RS20960 0.74 +1.0 4,531,934 - DZA65_RS20960 0.74 +2.6 4,531,985 + DZA65_RS20960 0.78 +0.0 4,531,985 + DZA65_RS20960 0.78 +2.8 4,531,985 + DZA65_RS20960 0.78 +0.4 4,531,985 + DZA65_RS20960 0.78 -0.1 4,531,985 + DZA65_RS20960 0.78 -0.1 4,531,986 - DZA65_RS20960 0.78 -0.4 4,531,986 - DZA65_RS20960 0.78 -0.5 4,531,986 - DZA65_RS20960 0.78 +0.9 4,532,025 - DZA65_RS20960 0.81 -0.1 4,532,198 + -0.7 4,532,199 - -1.7 4,532,199 - -0.3 4,532,214 - +0.0 4,532,274 - -0.3 4,532,373 + -1.2 4,532,373 + -2.1 4,532,374 - +0.3 4,532,378 + +0.8 4,532,378 + +0.3 4,532,378 + +0.4 4,532,378 + +0.6 4,532,378 + +0.6 4,532,379 - -0.5 4,532,379 - +0.0 4,532,379 - -0.4 4,532,379 - -1.7 4,532,379 - -0.3 4,532,379 - -0.4 4,532,379 - +0.1 4,532,415 + -0.3 4,532,415 + -0.7 4,532,415 + -0.0 4,532,415 + +0.6 4,532,415 + -0.0 4,532,415 + +0.1 4,532,415 + -0.2 4,532,415 + +1.8 4,532,415 + -0.2 4,532,416 - +0.0 4,532,416 - -0.6 4,532,416 - -1.7 4,532,417 + +0.6 4,532,417 + -0.6 4,532,417 + -0.6 4,532,417 + -0.5 4,532,417 + -0.7 4,532,417 + -1.1 4,532,418 - +0.5 4,532,418 - -2.1 4,532,418 - +0.0 4,532,418 - +0.5 4,532,418 - -0.4 4,532,418 - -1.1 4,532,493 - -0.3 4,532,497 + -0.9 4,532,510 - -0.9 4,532,521 + +1.3 4,532,536 + +0.2 4,532,536 + -0.2 4,532,536 + +0.1 4,532,536 + -1.1 4,532,536 + -1.0 4,532,536 + -1.2 4,532,536 + -0.9 4,532,537 - -0.6 4,532,539 + +0.1 4,532,539 + -0.7 4,532,726 + DZA65_RS20965 0.39 -0.2 4,532,726 + DZA65_RS20965 0.39 +1.5 4,532,740 + DZA65_RS20965 0.42 +0.3 4,532,741 - DZA65_RS20965 0.42 +0.3 4,532,759 - DZA65_RS20965 0.46 +0.9 4,532,890 + DZA65_RS20965 0.71 +0.1 4,532,891 - DZA65_RS20965 0.71 -0.3 4,532,891 - DZA65_RS20965 0.71 +0.4 4,532,891 - DZA65_RS20965 0.71 +0.6 4,533,053 - -0.7 4,533,072 + -1.6 4,533,072 + -0.3 4,533,072 + -0.0 4,533,073 - -0.3 4,533,073 - -0.7 4,533,165 - DZA65_RS20970 0.11 -1.7 4,533,377 + DZA65_RS20970 0.33 +1.3 4,533,379 + DZA65_RS20970 0.33 -2.1 4,533,380 - DZA65_RS20970 0.33 -0.3 4,533,409 + DZA65_RS20970 0.36 +0.7 4,533,459 + DZA65_RS20970 0.41 -1.9 4,533,460 - DZA65_RS20970 0.41 +0.6 4,533,463 - DZA65_RS20970 0.41 -1.2 4,533,467 + DZA65_RS20970 0.42 -1.0 4,533,467 + DZA65_RS20970 0.42 -0.6 4,533,468 - DZA65_RS20970 0.42 -1.8 4,533,468 - DZA65_RS20970 0.42 -0.6 4,533,468 - DZA65_RS20970 0.42 -1.1 4,533,468 - DZA65_RS20970 0.42 -1.9 4,533,468 - DZA65_RS20970 0.42 -0.2 4,533,524 + DZA65_RS20970 0.47 -0.3 4,533,524 + DZA65_RS20970 0.47 +0.1 4,533,524 + DZA65_RS20970 0.47 -0.4 4,533,524 + DZA65_RS20970 0.47 -1.5 4,533,524 + DZA65_RS20970 0.47 -1.4 4,533,524 + DZA65_RS20970 0.47 +0.0 4,533,524 + DZA65_RS20970 0.47 -1.1 4,533,524 + DZA65_RS20970 0.47 -0.5 4,533,524 + DZA65_RS20970 0.47 -2.6 4,533,524 + DZA65_RS20970 0.47 -0.5 4,533,525 - DZA65_RS20970 0.47 -1.4 4,533,525 - DZA65_RS20970 0.47 -0.9 4,533,526 + DZA65_RS20970 0.48 -1.4 4,533,526 + DZA65_RS20970 0.48 -1.1 4,533,526 + DZA65_RS20970 0.48 -2.2 4,533,526 + DZA65_RS20970 0.48 -1.7 4,533,527 - DZA65_RS20970 0.48 -0.8 4,533,527 - DZA65_RS20970 0.48 -1.3 4,533,527 - DZA65_RS20970 0.48 +1.6 4,533,527 - DZA65_RS20970 0.48 -1.6 4,533,527 - DZA65_RS20970 0.48 -1.3 4,533,603 + DZA65_RS20970 0.55 -1.8 4,533,603 + DZA65_RS20970 0.55 -0.5 4,533,603 + DZA65_RS20970 0.55 -1.1 4,533,603 + DZA65_RS20970 0.55 -0.9 4,533,604 - DZA65_RS20970 0.55 -0.6 4,533,648 - DZA65_RS20970 0.60 -1.7 4,533,694 + DZA65_RS20970 0.64 -1.8 4,533,694 + DZA65_RS20970 0.64 -0.3 4,533,745 + DZA65_RS20970 0.69 -1.9 4,533,746 - DZA65_RS20970 0.70 -0.7 4,533,746 - DZA65_RS20970 0.70 -1.9 4,533,746 - DZA65_RS20970 0.70 -0.8 4,533,746 - DZA65_RS20970 0.70 -2.8 4,533,767 - DZA65_RS20970 0.72 -0.1 4,533,901 + DZA65_RS20970 0.85 -1.6 4,533,974 - -0.3
Or see this region's nucleotide sequence