Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20935

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,524,904	+		DZA65_RS20930	0.72	+1.4
4,524,905	-		DZA65_RS20930	0.72	+0.3
4,524,905	-		DZA65_RS20930	0.72	-0.4
4,524,958	+		DZA65_RS20930	0.74	+0.3
4,524,958	+		DZA65_RS20930	0.74	+0.5
4,524,958	+		DZA65_RS20930	0.74	-0.1
4,524,958	+		DZA65_RS20930	0.74	-0.9
4,524,958	+		DZA65_RS20930	0.74	-0.7
4,524,958	+		DZA65_RS20930	0.74	-0.5
4,524,959	-		DZA65_RS20930	0.74	-1.4
4,524,959	-		DZA65_RS20930	0.74	-0.5
4,524,959	-		DZA65_RS20930	0.74	-0.3
4,524,959	-		DZA65_RS20930	0.74	-0.8
4,524,959	-		DZA65_RS20930	0.74	-0.1
4,524,959	-		DZA65_RS20930	0.74	-0.6
4,524,959	-		DZA65_RS20930	0.74	-1.1
4,524,959	-		DZA65_RS20930	0.74	+0.8
4,524,959	-		DZA65_RS20930	0.74	+1.2
4,524,959	-		DZA65_RS20930	0.74	-0.1
4,524,959	-		DZA65_RS20930	0.74	+0.1
4,525,193	+		DZA65_RS20930	0.85	-1.0
4,525,194	-		DZA65_RS20930	0.85	+0.3
4,525,226	-		DZA65_RS20930	0.86	-0.4
4,525,247	+		DZA65_RS20930	0.87	+1.0
4,525,355	+				+0.7
4,525,355	+				+0.7
4,525,355	+				+0.0
4,525,355	+				-1.0
4,525,356	-				+0.8
4,525,356	-				+0.3
4,525,356	-				-1.1
4,525,383	+				+0.9
4,525,383	+				-0.5
4,525,383	+				+0.7
4,525,383	+				-0.5
4,525,383	+				+0.3
4,525,383	+				+0.7
4,525,384	-				-0.2
4,525,384	-				-0.7
4,525,443	-				-2.4
4,525,468	+				-0.9
4,525,490	+				-0.7
4,525,490	+				+1.3
4,525,490	+				-0.4
4,525,490	+				-0.8
4,525,491	-				+0.3
4,525,491	-				+0.1
4,525,491	-				+0.4
4,525,491	-				-0.2
4,525,491	-				-1.7
4,525,493	+				-0.4
4,525,493	+				+0.3
4,525,493	+				+0.3
4,525,493	+				-1.9
4,525,494	-				-0.5
4,525,494	-				+0.4
4,525,494	-				+0.2
4,525,494	-				+0.2
4,525,494	-				+0.1
4,525,539	+				-0.3
4,525,539	+				+0.0
4,525,539	+				+0.7
4,525,540	-				+0.0
4,525,540	-				+0.9
4,525,540	-				+0.6
4,525,551	+				-0.2
4,525,552	-				-2.6
4,525,552	-				-0.6
4,525,556	+				-0.2
4,525,556	+				-0.2
4,525,595	+				+0.0
4,525,595	+				+0.7
4,525,661	+				+0.3
4,525,661	+				-0.1
4,525,662	-				-0.4
4,525,662	-				-0.1
4,525,662	-				-1.0
4,525,662	-				-0.9
4,525,697	+				+0.9
4,525,698	-				-1.4
4,525,698	-				-0.1
4,525,726	+				-0.0
4,525,726	+				-0.2
4,525,727	-				-0.0
4,525,745	+				+0.4
4,525,745	+				-0.7
4,525,782	+				+0.7
4,525,782	+				-0.9
4,525,782	+				-0.1
4,525,783	-				-1.1
4,525,783	-				-0.1
4,525,784	+				-0.3
4,525,784	+				-0.4
4,525,784	+				-0.2
4,525,785	-				+0.2
4,525,798	+				+0.0
4,525,798	+				-0.4
4,525,804	+				-0.7
4,525,805	-				-0.0
4,525,805	-				-0.7
4,525,805	-				+0.3
4,525,855	-				-1.3
4,525,882	+				-1.3
4,525,883	-				-2.7
4,525,889	+				-0.3
4,525,889	+				+0.4
4,525,889	+				-0.2
4,525,890	-				+0.3
4,525,890	-				+0.3
4,525,941	+				-2.2
4,525,942	-				-1.6
4,525,957	-				-0.0
4,525,960	+				+0.8
4,525,960	+				-0.3
4,525,961	-				+0.1
4,525,983	-				-1.2
4,526,018	+				-2.3
4,526,018	+				-0.5
4,526,031	+				-1.1
4,526,067	+		DZA65_RS20935	0.10	-0.5
4,526,067	+		DZA65_RS20935	0.10	-2.2
4,526,067	+		DZA65_RS20935	0.10	+0.1
4,526,068	-		DZA65_RS20935	0.11	-0.5
4,526,068	-		DZA65_RS20935	0.11	-2.2
4,526,081	+		DZA65_RS20935	0.11	+0.5
4,526,081	+		DZA65_RS20935	0.11	-1.3
4,526,081	+		DZA65_RS20935	0.11	-0.2
4,526,082	-		DZA65_RS20935	0.11	-0.7
4,526,191	-		DZA65_RS20935	0.18	-1.6
4,526,271	+		DZA65_RS20935	0.23	+1.7
4,526,271	+		DZA65_RS20935	0.23	+0.9
4,526,272	-		DZA65_RS20935	0.23	-0.7
4,526,272	-		DZA65_RS20935	0.23	-1.3
4,526,272	-		DZA65_RS20935	0.23	-0.2
4,526,272	-		DZA65_RS20935	0.23	+0.3
4,526,462	+		DZA65_RS20935	0.34	+1.7
4,526,502	+		DZA65_RS20935	0.36	-0.5
4,526,502	+				+0.5
4,526,502	+		DZA65_RS20935	0.36	-0.4
4,526,502	+		DZA65_RS20935	0.36	-0.1
4,526,502	+		DZA65_RS20935	0.36	-0.4
4,526,503	-		DZA65_RS20935	0.36	+0.8
4,526,503	-		DZA65_RS20935	0.36	-1.1
4,526,503	-		DZA65_RS20935	0.36	-1.0
4,526,503	-		DZA65_RS20935	0.36	+0.3
4,526,503	-		DZA65_RS20935	0.36	+0.3
4,526,503	-		DZA65_RS20935	0.36	-0.4
4,526,503	-		DZA65_RS20935	0.36	+0.6
4,526,503	-		DZA65_RS20935	0.36	+0.2
4,526,573	+		DZA65_RS20935	0.41	-0.5
4,526,573	+		DZA65_RS20935	0.41	-0.7
4,526,589	-		DZA65_RS20935	0.41	-0.0
4,526,589	-		DZA65_RS20935	0.41	-0.7
4,526,610	+		DZA65_RS20935	0.43	+0.7
4,526,610	+		DZA65_RS20935	0.43	-1.6
4,526,610	+		DZA65_RS20935	0.43	-0.6
4,526,611	-		DZA65_RS20935	0.43	-1.6
4,526,611	-		DZA65_RS20935	0.43	+1.0
4,526,723	+		DZA65_RS20935	0.49	-0.0
4,526,723	+		DZA65_RS20935	0.49	-0.4
4,526,723	+		DZA65_RS20935	0.49	+1.6
4,526,723	+		DZA65_RS20935	0.49	+0.7
4,526,724	-		DZA65_RS20935	0.49	+0.3
4,526,724	-		DZA65_RS20935	0.49	+1.8
4,526,724	-		DZA65_RS20935	0.49	-0.6
4,526,755	+		DZA65_RS20935	0.51	+1.3
4,526,755	+		DZA65_RS20935	0.51	+0.6
4,526,755	+		DZA65_RS20935	0.51	-0.9
4,526,755	+		DZA65_RS20935	0.51	+0.7
4,526,756	-		DZA65_RS20935	0.51	-2.7
4,526,756	-		DZA65_RS20935	0.51	+0.5
4,526,756	-		DZA65_RS20935	0.51	+0.0
4,526,756	-		DZA65_RS20935	0.51	-1.3
4,526,757	+		DZA65_RS20935	0.51	+0.5
4,526,757	+		DZA65_RS20935	0.51	+0.1
4,526,757	+		DZA65_RS20935	0.51	-0.1
4,526,757	+		DZA65_RS20935	0.51	-0.1
4,526,758	-		DZA65_RS20935	0.51	-1.2
4,526,779	+		DZA65_RS20935	0.53	+0.2
4,526,807	+		DZA65_RS20935	0.54	-3.3
4,526,807	+		DZA65_RS20935	0.54	-0.1
4,526,807	+		DZA65_RS20935	0.54	-0.5
4,526,807	+		DZA65_RS20935	0.54	-0.3
4,526,807	+		DZA65_RS20935	0.54	-0.6
4,526,807	+		DZA65_RS20935	0.54	+0.4
4,526,807	+		DZA65_RS20935	0.54	-0.5
4,526,807	+		DZA65_RS20935	0.54	-0.3
4,526,808	-		DZA65_RS20935	0.54	+0.3
4,526,808	-		DZA65_RS20935	0.54	-1.3
4,526,808	-		DZA65_RS20935	0.54	+0.0
4,526,808	-		DZA65_RS20935	0.54	-0.0
4,526,819	+		DZA65_RS20935	0.55	-1.1
4,526,819	+		DZA65_RS20935	0.55	+0.7
4,526,819	+		DZA65_RS20935	0.55	+0.8
4,526,820	-		DZA65_RS20935	0.55	-0.1
4,526,820	-		DZA65_RS20935	0.55	+0.7
4,526,877	+		DZA65_RS20935	0.59	-2.7
4,526,877	+		DZA65_RS20935	0.59	+0.5
4,526,877	+		DZA65_RS20935	0.59	+0.8
4,526,877	+		DZA65_RS20935	0.59	+0.7
4,526,877	+		DZA65_RS20935	0.59	-0.3
4,526,877	+		DZA65_RS20935	0.59	-0.1
4,526,877	+		DZA65_RS20935	0.59	-1.7
4,526,877	+		DZA65_RS20935	0.59	-0.6
4,526,877	+		DZA65_RS20935	0.59	-0.8
4,526,878	-		DZA65_RS20935	0.59	+1.2
4,526,878	-		DZA65_RS20935	0.59	-1.3
4,526,878	-		DZA65_RS20935	0.59	-0.5
4,526,878	-		DZA65_RS20935	0.59	+0.3
4,526,878	-		DZA65_RS20935	0.59	-0.1
4,526,896	+		DZA65_RS20935	0.60	-1.6
4,526,896	+		DZA65_RS20935	0.60	-0.1
4,526,896	+		DZA65_RS20935	0.60	+1.3
4,526,896	+		DZA65_RS20935	0.60	-0.1
4,526,896	+		DZA65_RS20935	0.60	+0.1
4,526,897	-		DZA65_RS20935	0.60	+0.3
4,526,897	-		DZA65_RS20935	0.60	+0.7
4,526,897	-		DZA65_RS20935	0.60	+0.3
4,526,897	-				-1.1
4,526,897	-		DZA65_RS20935	0.60	-0.4
4,526,908	+		DZA65_RS20935	0.60	-0.3
4,526,908	+		DZA65_RS20935	0.60	-2.0
4,526,909	-		DZA65_RS20935	0.60	+1.0
4,526,909	-		DZA65_RS20935	0.60	+0.3
4,526,909	-		DZA65_RS20935	0.60	-0.7
4,526,909	-		DZA65_RS20935	0.60	+1.3
4,526,915	+		DZA65_RS20935	0.61	+0.0
4,526,916	-		DZA65_RS20935	0.61	+0.5
4,526,989	+		DZA65_RS20935	0.65	-1.4
4,526,990	-		DZA65_RS20935	0.65	-0.3
4,526,990	-		DZA65_RS20935	0.65	+0.1
4,527,028	+		DZA65_RS20935	0.67	-0.3
4,527,029	-		DZA65_RS20935	0.68	+0.1
4,527,029	-		DZA65_RS20935	0.68	-1.2
4,527,047	+		DZA65_RS20935	0.69	+1.0
4,527,047	+		DZA65_RS20935	0.69	+0.3
4,527,048	-		DZA65_RS20935	0.69	-0.2
4,527,048	-		DZA65_RS20935	0.69	+0.0
4,527,059	+		DZA65_RS20935	0.69	-0.3
4,527,059	+		DZA65_RS20935	0.69	+1.7
4,527,059	+				+1.3
4,527,059	+		DZA65_RS20935	0.69	+0.6
4,527,059	+		DZA65_RS20935	0.69	+0.1
4,527,059	+		DZA65_RS20935	0.69	-0.4
4,527,059	+		DZA65_RS20935	0.69	+0.5
4,527,059	+		DZA65_RS20935	0.69	+1.0
4,527,060	-		DZA65_RS20935	0.69	+0.2
4,527,060	-		DZA65_RS20935	0.69	+0.9
4,527,060	-		DZA65_RS20935	0.69	-0.7
4,527,060	-		DZA65_RS20935	0.69	-1.2
4,527,060	-		DZA65_RS20935	0.69	-0.1
4,527,060	-		DZA65_RS20935	0.69	+0.6
4,527,060	-		DZA65_RS20935	0.69	+0.1
4,527,064	+		DZA65_RS20935	0.70	+1.8
4,527,188	+		DZA65_RS20935	0.77	-1.7
4,527,188	+		DZA65_RS20935	0.77	-0.6
4,527,188	+		DZA65_RS20935	0.77	-0.6
4,527,189	-		DZA65_RS20935	0.77	-0.0
4,527,189	-		DZA65_RS20935	0.77	+0.2
4,527,189	-		DZA65_RS20935	0.77	+0.4
4,527,189	-		DZA65_RS20935	0.77	+1.3
4,527,198	+				+1.0
4,527,296	-		DZA65_RS20935	0.83	+0.3
4,527,304	+		DZA65_RS20935	0.84	-2.3
4,527,362	+		DZA65_RS20935	0.87	+0.6
4,527,423	+				+0.0
4,527,423	+				-0.4
4,527,423	+				-2.2
4,527,423	+				-0.3
4,527,424	-				+0.1
4,527,424	-				-0.4
4,527,424	-				+1.4
4,527,536	+				-1.1
4,527,610	+				+1.3
4,527,611	-				-0.7
4,527,611	-				+1.3
4,527,618	+				+0.2
4,527,618	+				-2.7
4,527,618	+				+0.5
4,527,618	+				+0.8
4,527,618	+				+0.4
4,527,618	+				-0.5
4,527,618	+				+1.0
4,527,618	+				+0.0
4,527,618	+				+0.3
4,527,618	+				-1.6
4,527,619	-				-0.7
4,527,619	-				+0.3
4,527,619	-				-2.2
4,527,619	-				+0.1
4,527,619	-				+0.3
4,527,619	-				-0.8
4,527,620	+				+0.1
4,527,625	+				+0.8
4,527,625	+				+0.5
4,527,626	-				+0.5
4,527,626	-				-1.2
4,527,630	-				-0.4
4,527,679	-				-0.2
4,527,724	+				+1.0
4,527,725	-				-1.2
4,527,725	-				-1.3
4,527,725	-				+0.1
4,527,725	-				-0.2
4,527,725	-				+0.3
4,527,749	-				-0.1
4,527,749	-				+0.0
4,527,749	-				+0.0
4,527,756	+				+1.8
4,527,757	-				-1.1
4,527,823	+		DZA65_RS20940	0.36	-0.5
4,527,824	-		DZA65_RS20940	0.36	+0.0
4,527,840	-		DZA65_RS20940	0.44	+0.4
4,527,914	+		DZA65_RS20940	0.78	-1.0
4,527,915	-		DZA65_RS20940	0.79	+0.3
4,527,915	-		DZA65_RS20940	0.79	-0.8
4,527,934	-		DZA65_RS20940	0.88	+0.7
4,527,950	+				+0.6
4,527,950	+				+0.8
4,527,951	-				+1.0
4,527,951	-				-0.4
4,527,951	-				+1.1
4,527,954	-				-1.2
4,527,959	+				+0.7
4,527,959	+				-0.1
4,527,959	+				-0.2
4,527,959	+				-0.9
4,527,959	+				-0.3
4,527,959	+				-0.3
4,527,959	+				-0.3
4,527,959	+				-1.1
4,527,959	+				-0.2
4,527,959	+				+0.1
4,527,959	+				-1.7
4,527,959	+				+0.8
4,527,959	+				-0.1
4,527,959	+				-0.4
4,527,959	+				-1.2
4,527,960	-				+0.3
4,527,960	-				+0.3
4,527,960	-				-1.8
4,527,960	-				-0.6
4,527,960	-				+0.8
4,527,960	-				+0.5
4,527,960	-				-1.7
4,527,962	+				+0.4
4,527,962	+				-0.7
4,527,962	+				-0.9
4,527,962	+				+1.1
4,527,962	+				-1.1
4,527,962	+				-0.6
4,527,962	+				+0.8
4,527,962	+				-1.3
4,527,962	+				-2.2
4,527,962	+				+0.4
4,527,962	+				+0.1
4,527,962	+				-0.9
4,527,962	+				-1.8
4,527,962	+				-0.4
4,527,962	+				-0.5
4,527,963	-				-1.2
4,527,963	-				-0.4
4,527,963	-				+1.1
4,527,963	-				-0.3
4,527,965	+				+1.0
4,527,965	+				-0.5
4,527,966	-				-0.0
4,527,966	-				-0.1
4,528,021	+				-0.6
4,528,021	+				-1.0
4,528,021	+				+0.5
4,528,022	-				+0.5
4,528,022	-				-0.2
4,528,022	-				-0.9
4,528,022	-				+1.0
4,528,022	-				-1.0
4,528,025	+				+0.6
4,528,025	+				-0.1
4,528,025	+				+1.3
4,528,025	+				+0.0
4,528,025	+				+0.4
4,528,026	-				-0.3
4,528,026	-				-1.9
4,528,026	-				+0.6
4,528,093	-				+0.3
4,528,093	-				-0.3
4,528,093	-				-0.9
4,528,096	-				-1.4
4,528,096	-				+0.3
4,528,096	-				-0.2
4,528,096	-				+1.3
4,528,105	+				-1.2
4,528,106	-				+0.7
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4,528,530	-		DZA65_RS20945	0.40	-0.1