Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20310

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,404,556	-				-2.1
4,404,587	+				-3.1
4,404,685	+				+0.5
4,404,685	+				+0.5
4,404,685	+				-0.7
4,404,685	+				-1.2
4,404,685	+				+0.6
4,404,685	+				+0.1
4,404,685	+				-0.7
4,404,685	+				-0.7
4,404,686	-				-0.3
4,404,687	+				+0.2
4,404,687	+				-0.4
4,404,688	-				-0.3
4,404,690	+				+1.2
4,404,690	+				-1.8
4,404,690	+				-0.2
4,404,690	+				-0.4
4,404,690	+				-0.9
4,404,786	+				+1.7
4,404,856	+				+0.4
4,404,856	+				-1.4
4,404,866	+				+0.6
4,404,866	+				+0.6
4,404,866	+				+0.9
4,404,866	+				-1.1
4,404,866	+				+0.1
4,404,866	+				+0.5
4,404,867	-				+0.6
4,404,867	-				+0.3
4,404,867	-				+1.2
4,404,867	-				-0.0
4,404,867	-				-1.0
4,404,867	-				-0.4
4,404,897	+				-0.6
4,404,898	-				+0.5
4,404,898	-				-1.0
4,404,930	+				-1.7
4,404,936	+				-0.8
4,404,942	+				-0.4
4,404,950	+				-1.4
4,404,951	-				-1.2
4,404,957	+				-0.2
4,404,957	+				+0.2
4,404,957	+				-0.1
4,404,957	+				+0.7
4,404,957	+				-0.3
4,404,957	+				-0.8
4,404,958	-				-2.1
4,404,958	-				+0.1
4,404,958	-				+0.6
4,404,958	-				-0.4
4,404,958	-				-0.4
4,404,958	-				+0.9
4,404,958	-				-0.6
4,404,958	-				-0.9
4,404,958	-				-1.2
4,404,958	-				+0.2
4,404,971	+				-0.3
4,404,971	+				-1.0
4,404,972	-				-0.4
4,404,972	-				-0.1
4,404,981	+				-0.8
4,404,981	+				+0.0
4,405,034	+		DZA65_RS20305	0.14	-0.7
4,405,034	+		DZA65_RS20305	0.14	-0.4
4,405,034	+		DZA65_RS20305	0.14	-0.4
4,405,034	+		DZA65_RS20305	0.14	+0.0
4,405,034	+		DZA65_RS20305	0.14	+0.6
4,405,034	+		DZA65_RS20305	0.14	+0.6
4,405,034	+		DZA65_RS20305	0.14	-0.1
4,405,035	-		DZA65_RS20305	0.14	+0.1
4,405,035	-		DZA65_RS20305	0.14	-0.2
4,405,035	-		DZA65_RS20305	0.14	-0.7
4,405,035	-		DZA65_RS20305	0.14	-0.9
4,405,035	-		DZA65_RS20305	0.14	-0.1
4,405,035	-		DZA65_RS20305	0.14	+0.2
4,405,035	-		DZA65_RS20305	0.14	+0.7
4,405,035	-		DZA65_RS20305	0.14	-0.5
4,405,035	-		DZA65_RS20305	0.14	+1.0
4,405,067	+		DZA65_RS20305	0.20	+1.0
4,405,067	+		DZA65_RS20305	0.20	+0.6
4,405,067	+		DZA65_RS20305	0.20	-1.5
4,405,067	+		DZA65_RS20305	0.20	+0.0
4,405,067	+		DZA65_RS20305	0.20	-1.6
4,405,067	+		DZA65_RS20305	0.20	-0.2
4,405,067	+		DZA65_RS20305	0.20	-2.2
4,405,067	+		DZA65_RS20305	0.20	-1.8
4,405,067	+		DZA65_RS20305	0.20	-0.8
4,405,067	+		DZA65_RS20305	0.20	+0.3
4,405,067	+		DZA65_RS20305	0.20	-0.6
4,405,067	+		DZA65_RS20305	0.20	-0.9
4,405,067	+		DZA65_RS20305	0.20	-0.1
4,405,067	+		DZA65_RS20305	0.20	-0.9
4,405,067	+		DZA65_RS20305	0.20	+1.5
4,405,067	+		DZA65_RS20305	0.20	-0.0
4,405,067	+		DZA65_RS20305	0.20	+0.2
4,405,067	+		DZA65_RS20305	0.20	-0.6
4,405,067	+		DZA65_RS20305	0.20	-0.8
4,405,067	+		DZA65_RS20305	0.20	+1.4
4,405,067	+		DZA65_RS20305	0.20	+0.0
4,405,067	+		DZA65_RS20305	0.20	-0.6
4,405,068	-		DZA65_RS20305	0.20	+0.4
4,405,068	-		DZA65_RS20305	0.20	-0.4
4,405,068	-		DZA65_RS20305	0.20	-1.1
4,405,068	-		DZA65_RS20305	0.20	-0.4
4,405,068	-		DZA65_RS20305	0.20	+1.8
4,405,068	-		DZA65_RS20305	0.20	-1.4
4,405,068	-		DZA65_RS20305	0.20	+0.3
4,405,068	-		DZA65_RS20305	0.20	-2.0
4,405,068	-		DZA65_RS20305	0.20	-0.8
4,405,068	-		DZA65_RS20305	0.20	+0.0
4,405,068	-		DZA65_RS20305	0.20	-1.2
4,405,068	-		DZA65_RS20305	0.20	-0.3
4,405,068	-		DZA65_RS20305	0.20	-0.3
4,405,068	-		DZA65_RS20305	0.20	-0.8
4,405,068	-		DZA65_RS20305	0.20	-0.4
4,405,068	-		DZA65_RS20305	0.20	-0.2
4,405,068	-		DZA65_RS20305	0.20	+0.4
4,405,068	-		DZA65_RS20305	0.20	-1.2
4,405,068	-		DZA65_RS20305	0.20	-0.5
4,405,068	-		DZA65_RS20305	0.20	-0.7
4,405,068	-		DZA65_RS20305	0.20	+0.9
4,405,071	+		DZA65_RS20305	0.21	-0.3
4,405,071	+		DZA65_RS20305	0.21	-0.3
4,405,071	+		DZA65_RS20305	0.21	-1.6
4,405,071	+		DZA65_RS20305	0.21	+0.0
4,405,071	+		DZA65_RS20305	0.21	-0.8
4,405,071	+		DZA65_RS20305	0.21	-0.4
4,405,071	+		DZA65_RS20305	0.21	-0.4
4,405,072	-		DZA65_RS20305	0.21	-0.5
4,405,072	-		DZA65_RS20305	0.21	-0.9
4,405,072	-		DZA65_RS20305	0.21	+0.2
4,405,072	-		DZA65_RS20305	0.21	+0.8
4,405,072	-		DZA65_RS20305	0.21	+0.9
4,405,118	+		DZA65_RS20305	0.29	-0.1
4,405,119	-		DZA65_RS20305	0.29	+0.1
4,405,135	-		DZA65_RS20305	0.32	-0.4
4,405,135	-		DZA65_RS20305	0.32	-0.4
4,405,160	+		DZA65_RS20305	0.37	+0.5
4,405,160	+		DZA65_RS20305	0.37	-0.5
4,405,161	-		DZA65_RS20305	0.37	+0.6
4,405,161	-		DZA65_RS20305	0.37	+0.2
4,405,161	-		DZA65_RS20305	0.37	+0.1
4,405,199	+		DZA65_RS20305	0.44	+0.8
4,405,199	+		DZA65_RS20305	0.44	-0.2
4,405,199	+		DZA65_RS20305	0.44	-1.9
4,405,200	-		DZA65_RS20305	0.44	-0.7
4,405,200	-		DZA65_RS20305	0.44	-0.3
4,405,200	-		DZA65_RS20305	0.44	+0.6
4,405,200	-		DZA65_RS20305	0.44	+0.2
4,405,204	-		DZA65_RS20305	0.45	+0.0
4,405,241	+		DZA65_RS20305	0.52	+1.2
4,405,241	+		DZA65_RS20305	0.52	-0.3
4,405,241	+		DZA65_RS20305	0.52	+0.1
4,405,241	+		DZA65_RS20305	0.52	-0.9
4,405,241	+		DZA65_RS20305	0.52	-1.4
4,405,241	+		DZA65_RS20305	0.52	-0.8
4,405,241	+		DZA65_RS20305	0.52	-0.6
4,405,241	+		DZA65_RS20305	0.52	+0.4
4,405,241	+		DZA65_RS20305	0.52	-0.5
4,405,241	+		DZA65_RS20305	0.52	-0.1
4,405,241	+		DZA65_RS20305	0.52	-0.8
4,405,241	+		DZA65_RS20305	0.52	+0.3
4,405,241	+		DZA65_RS20305	0.52	-0.8
4,405,241	+		DZA65_RS20305	0.52	+0.8
4,405,241	+		DZA65_RS20305	0.52	+0.4
4,405,241	+		DZA65_RS20305	0.52	-0.0
4,405,241	+		DZA65_RS20305	0.52	+0.9
4,405,241	+		DZA65_RS20305	0.52	-0.7
4,405,242	-		DZA65_RS20305	0.52	-0.6
4,405,242	-		DZA65_RS20305	0.52	-0.3
4,405,242	-		DZA65_RS20305	0.52	-0.1
4,405,242	-		DZA65_RS20305	0.52	+0.6
4,405,242	-		DZA65_RS20305	0.52	-0.3
4,405,242	-		DZA65_RS20305	0.52	+1.0
4,405,242	-		DZA65_RS20305	0.52	-0.0
4,405,242	-		DZA65_RS20305	0.52	-1.4
4,405,242	-		DZA65_RS20305	0.52	+1.2
4,405,242	-		DZA65_RS20305	0.52	+0.5
4,405,381	+		DZA65_RS20305	0.77	-0.4
4,405,382	-		DZA65_RS20305	0.78	-0.5
4,405,382	-		DZA65_RS20305	0.78	-0.6
4,405,382	-		DZA65_RS20305	0.78	-2.1
4,405,389	+		DZA65_RS20305	0.79	+0.8
4,405,390	-		DZA65_RS20305	0.79	-1.9
4,405,390	-		DZA65_RS20305	0.79	-0.5
4,405,390	-		DZA65_RS20305	0.79	-1.0
4,405,445	-		DZA65_RS20305	0.89	-0.0
4,405,455	+				-0.6
4,405,455	+				-0.0
4,405,455	+				-1.7
4,405,455	+				+0.5
4,405,455	+				+1.0
4,405,455	+				+0.1
4,405,455	+				+0.2
4,405,455	+				+1.0
4,405,456	-				+0.3
4,405,456	-				-0.3
4,405,456	-				-0.2
4,405,459	+				-0.0
4,405,459	+				+0.5
4,405,459	+				-0.8
4,405,459	+				-0.2
4,405,459	+				-0.5
4,405,459	+				+0.3
4,405,459	+				+0.1
4,405,459	+				+2.1
4,405,459	+				-0.4
4,405,459	+				-0.1
4,405,459	+				-0.6
4,405,459	+				-1.6
4,405,459	+				+0.5
4,405,459	+				-0.7
4,405,460	-				+0.3
4,405,460	-				+0.5
4,405,460	-				-0.5
4,405,460	-				+1.2
4,405,460	-				-0.8
4,405,460	-				-1.2
4,405,460	-				-0.5
4,405,460	-				-0.6
4,405,460	-				+0.1
4,405,460	-				+0.1
4,405,460	-				+1.0
4,405,460	-				+0.8
4,405,460	-				-0.0
4,405,460	-				-1.5
4,405,460	-				-0.8
4,405,460	-				-0.2
4,405,460	-				-0.2
4,405,460	-				-2.1
4,405,460	-				-0.4
4,405,460	-				+0.2
4,405,460	-				-0.1
4,405,480	+				+0.1
4,405,480	+				-1.4
4,405,481	-				+2.4
4,405,481	-				-2.7
4,405,481	-				-0.3
4,405,481	-				+0.1
4,405,481	-				-0.8
4,405,539	+				-0.8
4,405,539	+				-0.0
4,405,540	-				-1.1
4,405,565	+		DZA65_RS20310	0.16	-0.4
4,405,565	+		DZA65_RS20310	0.16	-1.8
4,405,565	+		DZA65_RS20310	0.16	-1.1
4,405,661	+		DZA65_RS20310	0.51	+0.8
4,405,662	-		DZA65_RS20310	0.52	-1.0
4,405,662	-		DZA65_RS20310	0.52	+0.1
4,405,679	+		DZA65_RS20310	0.58	-0.2
4,405,679	+		DZA65_RS20310	0.58	+1.2
4,405,680	-		DZA65_RS20310	0.59	-0.3
4,405,680	-		DZA65_RS20310	0.59	+1.2
4,405,680	-		DZA65_RS20310	0.59	+1.2
4,405,680	-		DZA65_RS20310	0.59	-0.3
4,405,680	-		DZA65_RS20310	0.59	-1.2
4,405,680	-		DZA65_RS20310	0.59	-0.5
4,405,680	-		DZA65_RS20310	0.59	+0.3
4,405,686	+		DZA65_RS20310	0.61	-0.5
4,405,686	+		DZA65_RS20310	0.61	+0.4
4,405,687	-		DZA65_RS20310	0.61	+1.2
4,405,809	+				-0.4
4,405,809	+				+0.8
4,405,810	-				-0.7
4,405,815	-				+0.5
4,406,628	+				-0.3
4,406,628	+				+0.0
4,406,628	+				-0.9
4,406,636	-				+0.4