Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20150

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,364,002	-				+0.8
4,364,047	+				-0.3
4,364,058	-				-3.0
4,364,122	+				-0.0
4,364,122	+				+0.8
4,364,122	+				-0.0
4,364,122	+				-0.9
4,364,122	+				-0.9
4,364,122	+				-0.4
4,364,122	+				+1.4
4,364,122	+				+0.4
4,364,122	+				+0.2
4,364,122	+				+0.5
4,364,122	+				-0.9
4,364,122	+				-0.3
4,364,122	+				+0.5
4,364,122	+				-0.6
4,364,122	+				+0.3
4,364,122	+				-0.0
4,364,122	+				-0.3
4,364,122	+				+0.6
4,364,122	+				-0.3
4,364,122	+				-0.4
4,364,122	+				+1.0
4,364,122	+				-0.7
4,364,122	+				+0.3
4,364,122	+				+0.5
4,364,122	+				-1.1
4,364,122	+				+0.4
4,364,123	-				+1.6
4,364,123	-				-2.3
4,364,123	-				-1.2
4,364,123	-				-3.2
4,364,123	-				+0.7
4,364,123	-				-0.7
4,364,123	-				-1.1
4,364,123	-				+0.0
4,364,123	-				-0.6
4,364,123	-				+0.3
4,364,123	-				+0.4
4,364,123	-				-1.3
4,364,123	-				-0.4
4,364,123	-				-0.9
4,364,123	-				+0.9
4,364,123	-				-0.2
4,364,123	-				-0.9
4,364,123	-				+0.2
4,364,123	-				-0.3
4,364,123	-				+0.2
4,364,123	-				-0.4
4,364,123	-				-0.0
4,364,123	-				-1.3
4,364,123	-				-0.9
4,364,123	-				+1.0
4,364,123	-				+0.4
4,364,124	+				-0.1
4,364,124	+				-0.5
4,364,124	+				+0.1
4,364,124	+				-1.9
4,364,124	+				+0.6
4,364,124	+				+0.0
4,364,124	+				+0.4
4,364,125	-				+1.0
4,364,125	-				+1.2
4,364,125	-				+0.5
4,364,125	-				-0.2
4,364,125	-				-0.4
4,364,125	-				-1.0
4,364,125	-				+0.5
4,364,125	-				-0.5
4,364,125	-				-0.3
4,364,125	-				+0.1
4,364,125	-				+0.1
4,364,125	-				-0.6
4,364,125	-				-0.6
4,364,147	+				-0.3
4,364,147	+				-0.7
4,364,148	-				+0.3
4,364,162	+				-0.5
4,364,181	+		DZA65_RS20140	0.12	+0.4
4,364,315	+		DZA65_RS20140	0.61	+1.4
4,364,315	+		DZA65_RS20140	0.61	-1.3
4,364,316	-		DZA65_RS20140	0.61	-0.6
4,364,347	+		DZA65_RS20140	0.72	-0.1
4,364,347	+		DZA65_RS20140	0.72	+1.0
4,364,348	-		DZA65_RS20140	0.72	-0.1
4,364,348	-		DZA65_RS20140	0.72	-0.5
4,364,348	-		DZA65_RS20140	0.72	+1.3
4,364,352	-		DZA65_RS20140	0.74	-0.1
4,364,352	-		DZA65_RS20140	0.74	-1.3
4,364,367	+		DZA65_RS20140	0.79	+0.1
4,364,367	+		DZA65_RS20140	0.79	+0.1
4,364,367	+		DZA65_RS20140	0.79	-0.0
4,364,368	-		DZA65_RS20140	0.80	+0.8
4,364,421	+				+1.0
4,364,430	+				+0.8
4,364,430	+				+1.8
4,364,430	+				-0.6
4,364,430	+				-0.2
4,364,430	+				+0.0
4,364,431	-				+0.9
4,364,431	-				-2.8
4,364,431	-				-0.2
4,364,442	+				+1.2
4,364,442	+				+1.0
4,364,442	+				-1.8
4,364,443	-				-0.1
4,364,443	-				-0.6
4,364,443	-				+1.9
4,364,446	+				+1.2
4,364,446	+				+0.8
4,364,446	+				-0.6
4,364,446	+				+0.7
4,364,446	+				-0.4
4,364,446	+				-0.1
4,364,447	-				-0.8
4,364,447	-				-1.2
4,364,447	-				+0.7
4,364,447	-				-0.1
4,364,447	-				+0.5
4,364,461	+				+0.2
4,364,461	+				+0.3
4,364,461	+				+0.1
4,364,462	-				+0.3
4,364,462	-				-1.0
4,364,524	+				-1.8
4,364,524	+				+1.1
4,364,524	+				-0.1
4,364,525	-				+1.4
4,364,525	-				-0.5
4,364,525	-				+0.9
4,364,525	-				-1.6
4,364,528	+				-0.5
4,364,545	-				-0.1
4,364,580	+				-1.0
4,364,580	+				+0.6
4,364,580	+				-1.1
4,364,580	+				+0.2
4,364,580	+				-0.4
4,364,581	-				-1.6
4,364,581	-				-2.2
4,364,581	-				-1.0
4,364,581	-				-0.4
4,364,581	-				-0.9
4,364,581	-				-0.4
4,364,582	+				-1.3
4,364,582	+				-0.5
4,364,598	+				-0.4
4,364,599	-				-1.1
4,364,599	-				+0.4
4,364,604	-				-2.1
4,364,604	-				-0.4
4,364,604	-				+0.3
4,364,642	+				-0.1
4,364,642	+				-0.4
4,364,644	+				-0.7
4,364,644	+				+0.2
4,364,644	+				-0.6
4,364,644	+				+1.0
4,364,645	-				+0.2
4,364,645	-				-0.6
4,364,645	-				-0.1
4,364,645	-				-0.1
4,364,645	-				-0.6
4,364,645	-				-0.1
4,364,645	-				-0.1
4,364,645	-				-0.1
4,364,710	+				+0.3
4,364,711	-				+1.6
4,364,732	+				-0.2
4,364,733	-				+0.2
4,364,733	-				+0.0
4,364,798	+		DZA65_RS20145	0.72	-1.6
4,364,798	+		DZA65_RS20145	0.72	+0.5
4,364,810	+		DZA65_RS20145	0.88	-1.1
4,364,810	+		DZA65_RS20145	0.88	-0.0
4,364,810	+		DZA65_RS20145	0.88	-0.0
4,364,810	+		DZA65_RS20145	0.88	+0.2
4,364,842	+				-0.9
4,364,843	-				+0.5
4,364,843	-				-0.6
4,364,843	-				-1.1
4,364,843	-				+0.1
4,364,869	+				+0.6
4,364,869	+				-0.9
4,364,871	+				-0.1
4,364,872	-				+0.1
4,364,872	-				+1.0
4,365,569	-				-1.4
4,365,616	-				-0.6
4,365,620	-				+0.2
4,365,620	-				-0.1
4,365,629	+				-0.8
4,365,629	+				-0.4
4,365,629	+				-1.4
4,365,629	+				-2.0
4,365,630	-				+0.6
4,365,636	+				-0.1
4,365,636	+				+0.8
4,365,636	+				-0.3
4,365,636	+				-0.2
4,365,636	+				-0.2
4,365,636	+				-0.2
4,365,636	+				+0.5
4,365,636	+				-0.3
4,365,636	+				-0.2
4,365,636	+				-1.3
4,365,636	+				-1.1
4,365,637	-				+0.4
4,365,637	-				-0.1
4,365,637	-				-0.1
4,365,637	-				-0.8
4,365,637	-				-1.0
4,365,637	-				+0.0
4,365,640	-				-0.9
4,365,640	-				-0.8
4,365,640	-				+0.8
4,365,640	-				-1.3
4,365,640	-				+0.8
4,365,640	-				+0.7
4,365,640	-				+0.3
4,365,640	-				+0.1
4,365,640	-				-0.7
4,365,641	+				+0.3
4,365,641	+				-0.2
4,365,642	-				-0.6
4,365,642	-				-0.0