Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18625

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,011,324	+		DZA65_RS18620	0.32	-0.5
4,011,325	-		DZA65_RS18620	0.32	+0.5
4,011,325	-		DZA65_RS18620	0.32	+0.8
4,011,474	+		DZA65_RS18620	0.46	+0.5
4,011,480	+		DZA65_RS18620	0.47	-1.5
4,011,480	+		DZA65_RS18620	0.47	-1.0
4,011,480	+		DZA65_RS18620	0.47	-0.6
4,011,480	+		DZA65_RS18620	0.47	-0.3
4,011,480	+		DZA65_RS18620	0.47	-0.2
4,011,480	+		DZA65_RS18620	0.47	+1.9
4,011,480	+		DZA65_RS18620	0.47	-1.1
4,011,480	+		DZA65_RS18620	0.47	+0.7
4,011,480	+		DZA65_RS18620	0.47	+0.1
4,011,480	+		DZA65_RS18620	0.47	+0.1
4,011,480	+		DZA65_RS18620	0.47	+0.7
4,011,481	-		DZA65_RS18620	0.47	-0.9
4,011,481	-		DZA65_RS18620	0.47	-1.4
4,011,481	-		DZA65_RS18620	0.47	+0.1
4,011,481	-		DZA65_RS18620	0.47	-0.7
4,011,484	+		DZA65_RS18620	0.47	+0.8
4,011,485	-		DZA65_RS18620	0.47	-0.5
4,011,537	+		DZA65_RS18620	0.52	+0.1
4,011,548	+		DZA65_RS18620	0.53	+0.5
4,011,549	-		DZA65_RS18620	0.54	-0.3
4,011,549	-		DZA65_RS18620	0.54	-0.3
4,011,847	+		DZA65_RS18620	0.82	-0.3
4,011,847	+		DZA65_RS18620	0.82	-0.6
4,011,847	+		DZA65_RS18620	0.82	-0.2
4,011,847	+		DZA65_RS18620	0.82	-0.6
4,011,847	+		DZA65_RS18620	0.82	-0.7
4,011,848	-		DZA65_RS18620	0.82	+0.3
4,011,848	-		DZA65_RS18620	0.82	-0.1
4,011,848	-		DZA65_RS18620	0.82	-0.2
4,011,848	-		DZA65_RS18620	0.82	+0.3
4,011,848	-		DZA65_RS18620	0.82	-0.3
4,011,848	-		DZA65_RS18620	0.82	+0.7
4,011,848	-		DZA65_RS18620	0.82	-0.9
4,011,848	-		DZA65_RS18620	0.82	-0.8
4,011,848	-		DZA65_RS18620	0.82	-0.9
4,011,848	-		DZA65_RS18620	0.82	-0.1
4,011,848	-		DZA65_RS18620	0.82	-0.2
4,011,848	-		DZA65_RS18620	0.82	-2.1
4,011,881	+		DZA65_RS18620	0.86	+0.3
4,011,881	+		DZA65_RS18620	0.86	+0.1
4,011,882	-		DZA65_RS18620	0.86	-0.5
4,011,901	-		DZA65_RS18620	0.88	-0.4
4,011,901	-		DZA65_RS18620	0.88	-1.2
4,011,996	-				-1.2
4,011,996	-				-0.0
4,011,996	-				+0.7
4,012,117	-				+0.5
4,012,135	+				+0.4
4,012,135	+				-0.6
4,012,135	+				-0.8
4,012,136	-				+0.6
4,012,136	-				-0.1
4,012,136	-				-0.5
4,012,136	-				-1.1
4,012,136	-				-0.9
4,012,136	-				+0.7
4,012,136	-				+0.3
4,012,138	+				+1.1
4,012,176	+				+0.4
4,012,176	+				-0.9
4,012,176	+				-0.4
4,012,177	-				+0.1
4,012,177	-				-0.9
4,012,253	+		DZA65_RS18625	0.12	-0.0
4,012,253	+		DZA65_RS18625	0.12	-0.3
4,012,254	-		DZA65_RS18625	0.12	-2.4
4,012,444	-		DZA65_RS18625	0.81	-0.7
4,012,449	+		DZA65_RS18625	0.83	-0.3
4,012,449	+		DZA65_RS18625	0.83	-0.5
4,012,449	+		DZA65_RS18625	0.83	+0.3
4,012,449	+		DZA65_RS18625	0.83	+0.1
4,012,449	+		DZA65_RS18625	0.83	-0.8
4,012,449	+		DZA65_RS18625	0.83	-0.4
4,012,449	+		DZA65_RS18625	0.83	-0.0
4,012,450	-		DZA65_RS18625	0.83	-0.4
4,012,461	+		DZA65_RS18625	0.87	-0.9
4,012,462	-		DZA65_RS18625	0.87	+0.7
4,012,464	-		DZA65_RS18625	0.88	+0.3
4,012,464	-		DZA65_RS18625	0.88	-0.8
4,012,464	-		DZA65_RS18625	0.88	-0.7
4,012,494	+				-0.4
4,012,494	+				-0.5
4,012,494	+				-0.2
4,012,528	-				-0.7
4,012,535	+				+0.1
4,012,535	+				+0.8
4,012,536	-				+0.1
4,012,536	-				+0.8
4,012,602	+				+0.2
4,012,602	+				-0.6
4,012,603	-				+1.1
4,012,603	-				-0.7
4,012,650	+				-1.0
4,012,650	+				+1.5
4,012,650	+				-0.3
4,012,650	+				-0.5
4,012,651	-				-0.1
4,012,651	-				-1.1
4,012,651	-				-0.5
4,012,654	+				-0.1
4,012,654	+				-0.9
4,012,654	+				-1.1
4,012,654	+				+1.2
4,012,654	+				-0.9
4,012,654	+				+0.1
4,012,655	-				+2.2
4,012,655	-				+0.8
4,012,655	-				-2.8
4,012,655	-				+0.3
4,012,655	-				-0.8
4,012,655	-				+0.2
4,012,655	-				+0.2
4,012,655	-				-2.4
4,012,655	-				+0.1
4,012,656	+				-0.7
4,012,657	-				-1.5
4,012,657	-				+0.3
4,012,657	-				+0.2
4,012,712	+				+0.1
4,012,712	+				+0.4
4,012,712	+				-0.2
4,012,712	+				-0.8
4,012,712	+				-1.7
4,012,712	+				+0.2
4,012,712	+				-0.3
4,012,712	+				-0.7
4,012,712	+				+0.8
4,012,712	+				-0.9
4,012,712	+				-1.1
4,012,712	+				+0.8
4,012,720	+				+0.2
4,012,720	+				-1.3
4,012,720	+				-2.2
4,012,720	+				-2.5
4,012,768	+				-1.1
4,012,768	+				-0.9
4,012,768	+				+0.2
4,012,769	-				-1.9
4,012,769	-				-0.5
4,012,778	-				-0.4
4,012,778	-				+1.3
4,012,779	+				-0.1
4,012,779	+				-0.9
4,012,779	+				-0.4
4,012,779	+				-1.2
4,012,779	+				-0.2
4,012,779	+				+0.7
4,012,779	+				+0.2
4,012,779	+				-0.5
4,012,779	+				-2.1
4,012,779	+				-0.3
4,012,779	+				-0.3
4,012,779	+				-0.2
4,012,779	+				-0.9
4,012,779	+				-0.2
4,012,779	+				+1.3
4,012,779	+				-0.0
4,012,779	+				-1.1
4,012,779	+				+1.1
4,012,779	+				-1.1
4,012,806	+				+1.7
4,012,806	+				-0.5
4,012,806	+				+0.1
4,012,806	+				-1.2
4,012,806	+				+0.4
4,012,806	+				+0.4
4,012,806	+				+0.1
4,012,807	-				+0.7
4,012,807	-				+0.3
4,012,807	-				+0.2
4,012,807	-				-0.6
4,012,848	+				-1.2
4,012,848	+				-1.7
4,012,853	+				+0.4
4,012,853	+				-0.1
4,012,853	+				+1.1
4,012,854	-				+1.1
4,012,854	-				-0.8
4,012,854	-				+0.2
4,012,857	+				+0.5
4,012,857	+				-0.8
4,012,857	+				+0.2
4,012,857	+				-0.3
4,012,857	+				-1.5
4,012,857	+				+0.3
4,012,857	+				-1.2
4,012,857	+				-0.3
4,012,857	+				-1.7
4,012,857	+				-0.9
4,012,857	+				-0.4
4,012,858	-				+0.6
4,012,858	-				-1.8
4,012,858	-				+0.6
4,012,858	-				-0.4
4,012,858	-				-0.7
4,012,858	-				+0.8
4,012,858	-				-1.6
4,012,858	-				+0.4
4,012,858	-				+0.1
4,012,858	-				+0.5
4,012,872	+				+0.2
4,012,873	-				+0.2
4,012,873	-				-0.1
4,012,873	-				+1.4
4,012,900	+				-0.7
4,012,925	-				-1.6
4,012,927	+				+0.4
4,012,927	+				-2.1
4,012,928	-				+0.5
4,012,928	-				-0.4
4,013,003	+				-0.1
4,013,003	+				+0.4
4,013,003	+				+0.2
4,013,003	+				-0.3
4,013,003	+				-0.7
4,013,003	+				+0.3
4,013,004	-				-0.5
4,013,021	+				-0.4
4,013,021	+				-0.7
4,013,021	+				+0.8
4,013,021	+				-0.1
4,013,021	+				-1.6
4,013,021	+				-0.3
4,013,021	+				-0.4
4,013,022	-				-0.1
4,013,022	-				-0.5
4,013,022	-				-0.5
4,013,022	-				-0.0
4,013,032	-				-1.4
4,013,032	-				-0.9
4,013,085	+				+0.8
4,013,085	+				+0.5
4,013,086	-				-0.4
4,013,086	-				-0.9
4,013,202	-		DZA65_RS18635	0.12	+0.5
4,013,421	+		DZA65_RS18635	0.28	+0.1
4,013,421	+		DZA65_RS18635	0.28	+0.1
4,013,422	-		DZA65_RS18635	0.28	+0.0
4,013,422	-		DZA65_RS18635	0.28	+4.1
4,013,443	+		DZA65_RS18635	0.29	+0.4
4,013,444	-				+0.7
4,013,460	+		DZA65_RS18635	0.30	-0.0
4,013,460	+		DZA65_RS18635	0.30	+0.1
4,013,460	+		DZA65_RS18635	0.30	+0.1
4,013,460	+		DZA65_RS18635	0.30	+1.5
4,013,460	+		DZA65_RS18635	0.30	+1.1
4,013,460	+		DZA65_RS18635	0.30	+0.2
4,013,460	+		DZA65_RS18635	0.30	-0.2
4,013,460	+		DZA65_RS18635	0.30	+1.1
4,013,460	+		DZA65_RS18635	0.30	+0.2
4,013,460	+		DZA65_RS18635	0.30	-0.9
4,013,460	+		DZA65_RS18635	0.30	-1.0
4,013,460	+		DZA65_RS18635	0.30	-1.7
4,013,461	-		DZA65_RS18635	0.30	-0.7
4,013,461	-		DZA65_RS18635	0.30	+0.1
4,013,461	-		DZA65_RS18635	0.30	+1.1
4,013,461	-		DZA65_RS18635	0.30	-0.4
4,013,461	-		DZA65_RS18635	0.30	+0.3
4,013,461	-		DZA65_RS18635	0.30	+0.2
4,013,461	-		DZA65_RS18635	0.30	-0.7
4,013,461	-		DZA65_RS18635	0.30	-1.2
4,013,461	-		DZA65_RS18635	0.30	+0.2
4,013,461	-		DZA65_RS18635	0.30	-0.5
4,013,461	-		DZA65_RS18635	0.30	-0.6
4,013,485	+		DZA65_RS18635	0.32	-0.7