Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16675

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,598,752	+				-2.0
3,598,752	+				-0.6
3,598,752	+				-0.2
3,598,753	-				-0.2
3,598,753	-				+0.7
3,598,753	-				+1.4
3,598,768	+				+0.6
3,598,768	+				+0.5
3,598,769	-				+0.4
3,598,769	-				-2.5
3,598,785	+				-0.7
3,598,785	+				-1.4
3,598,785	+				+0.7
3,598,785	+				-0.9
3,598,785	+				+0.1
3,598,786	-				-1.6
3,598,786	-				-0.2
3,598,809	+				+0.5
3,598,810	-				+0.1
3,598,886	+				-0.7
3,598,897	+				+0.5
3,598,897	+				-1.0
3,598,958	-				+1.3
3,599,160	+		DZA65_RS16670	0.47	-0.3
3,599,160	+		DZA65_RS16670	0.47	-0.0
3,599,161	-		DZA65_RS16670	0.47	-1.0
3,599,237	-		DZA65_RS16670	0.65	-0.9
3,599,286	-		DZA65_RS16670	0.76	+0.6
3,599,317	+		DZA65_RS16670	0.84	+0.8
3,599,318	-		DZA65_RS16670	0.84	+0.1
3,599,372	+				-1.5
3,599,372	+				-1.4
3,599,372	+				-0.3
3,599,372	+				-0.3
3,599,373	-				-0.2
3,599,373	-				+1.5
3,599,379	+				-0.3
3,599,379	+				-0.5
3,599,380	-				-0.6
3,599,387	+				+0.2
3,599,413	+				+0.1
3,599,414	-				-0.3
3,599,424	+				-1.5
3,599,425	-				+1.0
3,599,434	+				-1.2
3,599,434	+				-0.5
3,599,434	+				-0.2
3,599,434	+				-0.3
3,599,435	-				-0.4
3,599,435	-				-0.4
3,599,436	+				+1.1
3,599,437	-				-0.6
3,599,437	-				-0.5
3,599,437	-				-0.0
3,599,439	+				+0.2
3,599,451	+				-2.0
3,599,451	+				-0.5
3,599,468	+				+0.1
3,599,468	+				+0.4
3,599,468	+				-0.3
3,599,468	+				-0.2
3,599,468	+				-0.3
3,599,469	-				-0.7
3,599,469	-				+0.4
3,599,469	-				-0.6
3,599,502	+				+0.1
3,599,502	+				+0.8
3,599,540	-				+0.2
3,599,540	-				-0.1
3,599,540	-				-0.4
3,599,543	+				-0.7
3,599,543	+				+1.1
3,599,543	+				-0.5
3,599,543	+				-2.0
3,599,543	+				-0.0
3,599,543	+				-3.0
3,599,543	+				-0.0
3,599,543	+				-1.0
3,599,543	+				-0.9
3,599,543	+				+0.7
3,599,543	+				-1.6
3,599,543	+				-0.0
3,599,543	+				-1.6
3,599,543	+				-0.5
3,599,543	+				+1.0
3,599,544	-				-1.4
3,599,544	-				-0.7
3,599,544	-				-0.9
3,599,544	-				-0.0
3,599,544	-				-0.2
3,599,544	-				-1.0
3,599,544	-				+0.1
3,599,544	-				+0.6
3,599,544	-				-0.9
3,599,545	+				-0.9
3,599,545	+				+0.1
3,599,545	+				-1.7
3,599,545	+				+0.7
3,599,545	+				-0.3
3,599,545	+				-2.2
3,599,545	+				+0.1
3,599,545	+				+0.8
3,599,546	-				-1.0
3,599,546	-				-0.3
3,599,546	-				+0.5
3,599,546	-				+0.2
3,599,546	-				-0.4
3,599,546	-				-0.1
3,599,546	-				-0.0
3,599,546	-				-0.8
3,599,546	-				-0.1
3,599,547	+				-0.5
3,599,547	+				-1.7
3,599,547	+				-0.2
3,599,547	+				-0.3
3,599,547	+				+0.3
3,599,547	+				+0.5
3,599,547	+				+0.2
3,599,548	-				+0.3
3,599,548	-				-1.0
3,599,548	-				-1.0
3,599,548	-				+0.1
3,599,548	-				-1.6
3,599,548	-				+2.0
3,599,548	-				-2.1
3,599,668	+				-0.9
3,599,668	+				+1.1
3,599,668	+				-0.0
3,599,668	+				+0.1
3,599,668	+				-0.4
3,599,668	+				-0.4
3,599,668	+				-0.7
3,599,668	+				-0.0
3,599,668	+				+1.4
3,599,668	+				-0.9
3,599,668	+				-0.1
3,599,668	+				+0.6
3,599,668	+				-0.0
3,599,668	+				-1.0
3,599,668	+				+0.6
3,599,669	-				-0.7
3,599,669	-				-1.5
3,599,669	-				-0.8
3,599,669	-				+0.4
3,599,669	-				-0.6
3,599,669	-				+0.6
3,599,669	-				-0.0
3,599,669	-				+1.4
3,599,669	-				-0.3
3,599,669	-				+0.7
3,599,674	+				+1.6
3,599,674	+				-0.2
3,599,674	+				-2.4
3,599,675	-				-0.2
3,599,675	-				-0.0
3,599,737	+				-1.3
3,599,779	+		DZA65_RS16675	0.13	+0.6
3,599,780	-		DZA65_RS16675	0.13	+0.5
3,599,780	-		DZA65_RS16675	0.13	-0.0
3,599,829	+		DZA65_RS16675	0.19	-1.0
3,599,878	+		DZA65_RS16675	0.24	-0.7
3,599,878	+		DZA65_RS16675	0.24	-0.6
3,599,878	+		DZA65_RS16675	0.24	-0.8
3,599,878	+		DZA65_RS16675	0.24	+0.4
3,599,878	+		DZA65_RS16675	0.24	-0.9
3,599,878	+				+0.5
3,599,879	-		DZA65_RS16675	0.25	-0.9
3,599,879	-		DZA65_RS16675	0.25	-0.5
3,599,879	-		DZA65_RS16675	0.25	-0.9
3,599,879	-		DZA65_RS16675	0.25	-0.8
3,599,879	-		DZA65_RS16675	0.25	-2.9
3,599,879	-		DZA65_RS16675	0.25	-2.4
3,599,954	+		DZA65_RS16675	0.33	+0.8
3,599,954	+		DZA65_RS16675	0.33	-0.6
3,599,954	+		DZA65_RS16675	0.33	-0.8
3,600,438	+				-0.0
3,600,438	+				-0.5
3,600,456	+				-0.7
3,600,465	-				-0.1
3,600,574	+				+1.0
3,600,602	+				-0.3
3,600,602	+				-0.7
3,600,603	-				-0.9
3,600,603	-				-1.0
3,600,603	-				+1.5
3,600,605	+				-0.8
3,600,605	+				-0.6
3,600,605	+				-0.6
3,600,605	+				-0.2
3,600,605	+				-0.0
3,600,605	+				-0.6
3,600,605	+				-0.8
3,600,605	+				+1.0
3,600,606	-				+0.2
3,600,606	-				-0.7
3,600,606	-				+0.1
3,600,606	-				-0.4
3,600,606	-				+1.2
3,600,606	-				-0.4
3,600,606	-				-0.1
3,600,606	-				-0.0
3,600,606	-				-0.5
3,600,606	-				-0.7
3,600,606	-				+0.3
3,600,606	-				-1.4
3,600,606	-				-1.6
3,600,606	-				-0.3
3,600,659	+				-0.6
3,600,660	-				+0.3
3,600,711	+		DZA65_RS16680	0.13	+0.2
3,600,711	+		DZA65_RS16680	0.13	+1.7
3,600,711	+		DZA65_RS16680	0.13	-0.3
3,600,711	+		DZA65_RS16680	0.13	+0.6
3,600,711	+		DZA65_RS16680	0.13	+0.3
3,600,712	-		DZA65_RS16680	0.14	-0.9
3,600,712	-		DZA65_RS16680	0.14	-0.0
3,600,712	-		DZA65_RS16680	0.14	+1.4
3,600,712	-		DZA65_RS16680	0.14	-2.4
3,600,712	-		DZA65_RS16680	0.14	+0.1
3,600,712	-		DZA65_RS16680	0.14	+0.6
3,600,715	+		DZA65_RS16680	0.14	-0.1
3,600,715	+		DZA65_RS16680	0.14	+0.1
3,600,716	-		DZA65_RS16680	0.14	+0.7
3,600,716	-		DZA65_RS16680	0.14	-0.0
3,600,716	-		DZA65_RS16680	0.14	-1.6
3,600,880	+		DZA65_RS16680	0.35	-0.3
3,600,880	+		DZA65_RS16680	0.35	+0.7
3,600,880	+		DZA65_RS16680	0.35	-0.5
3,600,881	-		DZA65_RS16680	0.35	+0.0
3,600,981	+		DZA65_RS16680	0.47	+0.5
3,600,982	-		DZA65_RS16680	0.47	+1.0
3,600,982	-		DZA65_RS16680	0.47	+0.6
3,600,982	-		DZA65_RS16680	0.47	+0.9
3,600,982	-		DZA65_RS16680	0.47	-1.0
3,600,982	-		DZA65_RS16680	0.47	-0.3
3,600,999	+		DZA65_RS16680	0.49	-1.0
3,600,999	+		DZA65_RS16680	0.49	-0.2
3,600,999	+		DZA65_RS16680	0.49	+0.7
3,600,999	+		DZA65_RS16680	0.49	-0.7
3,600,999	+		DZA65_RS16680	0.49	-0.4
3,600,999	+		DZA65_RS16680	0.49	+0.6
3,600,999	+		DZA65_RS16680	0.49	-0.0
3,601,000	-		DZA65_RS16680	0.50	-1.1
3,601,027	+		DZA65_RS16680	0.53	+0.5
3,601,027	+		DZA65_RS16680	0.53	-0.4
3,601,028	-		DZA65_RS16680	0.53	-1.0
3,601,028	-		DZA65_RS16680	0.53	+0.8
3,601,251	+		DZA65_RS16680	0.81	+0.2
3,601,252	-		DZA65_RS16680	0.81	-0.5
3,601,295	+		DZA65_RS16680	0.87	+0.2
3,601,295	+		DZA65_RS16680	0.87	-0.2
3,601,295	+		DZA65_RS16680	0.87	-1.5
3,601,295	+		DZA65_RS16680	0.87	-0.9
3,601,295	+		DZA65_RS16680	0.87	+0.5
3,601,295	+		DZA65_RS16680	0.87	+0.0
3,601,295	+		DZA65_RS16680	0.87	-0.6
3,601,295	+		DZA65_RS16680	0.87	-1.4
3,601,295	+		DZA65_RS16680	0.87	-0.0
3,601,295	+		DZA65_RS16680	0.87	-0.6
3,601,295	+		DZA65_RS16680	0.87	+0.4
3,601,295	+				-0.6
3,601,295	+		DZA65_RS16680	0.87	-0.1
3,601,296	-		DZA65_RS16680	0.87	-0.8
3,601,296	-		DZA65_RS16680	0.87	-1.0
3,601,296	-		DZA65_RS16680	0.87	-2.0
3,601,296	-		DZA65_RS16680	0.87	-0.5
3,601,296	-		DZA65_RS16680	0.87	-1.6
3,601,296	-		DZA65_RS16680	0.87	-0.8
3,601,296	-		DZA65_RS16680	0.87	-0.1
3,601,296	-		DZA65_RS16680	0.87	+0.5
3,601,297	+		DZA65_RS16680	0.87	-0.0
3,601,297	+		DZA65_RS16680	0.87	+0.1
3,601,297	+		DZA65_RS16680	0.87	-0.3
3,601,297	+		DZA65_RS16680	0.87	+0.1
3,601,297	+		DZA65_RS16680	0.87	-0.4
3,601,297	+		DZA65_RS16680	0.87	+1.3
3,601,297	+		DZA65_RS16680	0.87	+0.4
3,601,297	+		DZA65_RS16680	0.87	-1.0
3,601,297	+		DZA65_RS16680	0.87	+1.0
3,601,297	+		DZA65_RS16680	0.87	-0.2
3,601,297	+		DZA65_RS16680	0.87	-0.0
3,601,298	-		DZA65_RS16680	0.87	-0.2
3,601,298	-		DZA65_RS16680	0.87	-1.0
3,601,298	-		DZA65_RS16680	0.87	-0.9
3,601,298	-		DZA65_RS16680	0.87	-0.4
3,601,298	-		DZA65_RS16680	0.87	-1.0
3,601,298	-		DZA65_RS16680	0.87	-0.6
3,601,419	-				-1.4
3,601,419	-				+0.6
3,601,424	+				-0.1
3,601,430	+				-0.0
3,601,431	-				-1.6
3,601,431	-				+1.0
3,601,431	-				-1.5
3,601,431	-				+0.6
3,601,431	-				-0.4
3,601,431	-				-0.5
3,601,431	-				+0.4
3,601,434	+				-0.2
3,601,434	+				-1.0
3,601,434	+				-0.0
3,601,434	+				-1.5
3,601,434	+				+1.0
3,601,435	-				-0.9
3,601,435	-				+0.1
3,601,435	-				-1.9
3,601,473	+				-1.6
3,601,473	+				-0.0
3,601,473	+				-0.7
3,601,473	+				-0.3
3,601,474	-				-0.3
3,601,474	-				-0.7
3,601,474	-				+1.3
3,601,474	-				-0.2
3,601,474	-				+0.4
3,601,474	-				-0.2
3,601,474	-				-0.3
3,601,479	+				+0.1
3,601,479	+				+0.1
3,601,479	+				-0.5
3,601,479	+				-0.4
3,601,479	+				+0.0
3,601,479	+				-1.0
3,601,480	-				-0.4
3,601,480	-				-1.0
3,601,480	-				-1.7
3,601,480	-				+1.0
3,601,480	-				+1.0
3,601,480	-				-0.6
3,601,480	-				-0.4
3,601,480	-				+1.0
3,601,480	-				-0.4
3,601,486	+				-1.5
3,601,486	+				+0.2
3,601,486	+				-0.3
3,601,486	+				-0.6
3,601,486	+				+0.7
3,601,486	+				+1.1
3,601,486	+				-1.0
3,601,487	-				-0.2
3,601,487	-				+0.4
3,601,487	-				+0.5
3,601,487	-				+1.8
3,601,487	-				-1.4