Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16525

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,573,330	+		DZA65_RS16520	0.17	-0.6
3,573,330	+		DZA65_RS16520	0.17	-0.1
3,573,331	-		DZA65_RS16520	0.17	-0.1
3,573,331	-		DZA65_RS16520	0.17	-1.1
3,573,469	+		DZA65_RS16520	0.35	+0.4
3,573,469	+		DZA65_RS16520	0.35	-2.9
3,573,469	+		DZA65_RS16520	0.35	-1.9
3,573,469	+		DZA65_RS16520	0.35	+1.9
3,573,469	+		DZA65_RS16520	0.35	-0.1
3,573,469	+		DZA65_RS16520	0.35	-0.9
3,573,469	+		DZA65_RS16520	0.35	-2.1
3,573,469	+		DZA65_RS16520	0.35	-0.1
3,573,469	+		DZA65_RS16520	0.35	-0.0
3,573,469	+		DZA65_RS16520	0.35	+0.1
3,573,469	+		DZA65_RS16520	0.35	+0.2
3,573,470	-		DZA65_RS16520	0.35	-0.6
3,573,470	-		DZA65_RS16520	0.35	-0.8
3,573,470	-		DZA65_RS16520	0.35	+0.7
3,573,470	-		DZA65_RS16520	0.35	+0.7
3,573,470	-		DZA65_RS16520	0.35	+0.4
3,573,470	-		DZA65_RS16520	0.35	-0.7
3,573,486	-		DZA65_RS16520	0.38	-0.5
3,573,502	+		DZA65_RS16520	0.40	+0.0
3,573,503	-		DZA65_RS16520	0.40	-0.7
3,573,549	+		DZA65_RS16520	0.46	+1.8
3,573,550	-		DZA65_RS16520	0.46	-0.2
3,573,550	-		DZA65_RS16520	0.46	+0.6
3,573,648	-		DZA65_RS16520	0.59	+0.3
3,573,867	+		DZA65_RS16520	0.88	-0.5
3,573,868	-		DZA65_RS16520	0.88	-0.9
3,573,868	-		DZA65_RS16520	0.88	-0.2
3,573,868	-		DZA65_RS16520	0.88	+0.3
3,573,919	+				-0.5
3,573,919	+				-0.1
3,573,920	-				-0.1
3,573,928	+				-0.3
3,573,976	+				-0.9
3,573,990	+				+0.5
3,573,990	+				+0.9
3,573,991	-				-0.1
3,574,126	+				-0.3
3,574,172	+				+1.2
3,574,173	-				+0.2
3,574,173	-				-2.6
3,574,173	-				-0.8
3,574,200	-				+0.5
3,574,250	+				-0.1
3,574,257	+				-0.6
3,574,258	-				-0.1
3,574,291	+				-1.9
3,574,291	+				-0.5
3,574,291	+				+1.1
3,574,291	+				-0.4
3,574,291	+				+0.1
3,574,291	+				-0.6
3,574,291	+				-0.4
3,574,293	+				+0.6
3,574,293	+				+0.2
3,574,293	+				+0.3
3,574,293	+				-1.9
3,574,293	+				-0.2
3,574,293	+				-0.4
3,574,293	+				-0.5
3,574,293	+				-0.1
3,574,293	+				+0.9
3,574,293	+				+0.9
3,574,300	+				+1.5
3,574,302	+				-2.1
3,574,302	+				-0.2
3,574,302	+				+1.1
3,574,302	+				+0.1
3,574,302	+				-0.5
3,574,318	+				-0.1
3,574,350	+		DZA65_RS16525	0.11	+0.4
3,574,350	+		DZA65_RS16525	0.11	-1.1
3,574,350	+		DZA65_RS16525	0.11	+0.2
3,574,351	-		DZA65_RS16525	0.12	+0.9
3,574,351	-		DZA65_RS16525	0.12	+0.0
3,574,362	+		DZA65_RS16525	0.14	-0.8
3,574,475	+		DZA65_RS16525	0.40	-0.6
3,574,476	-		DZA65_RS16525	0.40	-0.5
3,574,476	-		DZA65_RS16525	0.40	+0.4
3,574,476	-		DZA65_RS16525	0.40	+0.1
3,574,476	-		DZA65_RS16525	0.40	-0.3
3,574,496	+		DZA65_RS16525	0.45	-0.0
3,574,497	-		DZA65_RS16525	0.45	+1.7
3,574,513	+		DZA65_RS16525	0.49	-0.3
3,574,513	+		DZA65_RS16525	0.49	-0.6
3,574,514	-		DZA65_RS16525	0.49	-0.1
3,574,514	-		DZA65_RS16525	0.49	+0.2
3,574,514	-		DZA65_RS16525	0.49	+0.4
3,574,514	-		DZA65_RS16525	0.49	-0.4
3,574,546	+		DZA65_RS16525	0.57	+0.0
3,574,547	-		DZA65_RS16525	0.57	+0.1
3,574,555	+		DZA65_RS16525	0.59	-0.5
3,574,555	+		DZA65_RS16525	0.59	-0.1
3,574,555	+		DZA65_RS16525	0.59	-0.0
3,574,555	+		DZA65_RS16525	0.59	-0.4
3,574,555	+		DZA65_RS16525	0.59	-0.1
3,574,556	-		DZA65_RS16525	0.59	+0.7
3,574,556	-		DZA65_RS16525	0.59	+0.5
3,574,558	+		DZA65_RS16525	0.59	+1.0
3,574,558	+		DZA65_RS16525	0.59	-0.1
3,574,558	+		DZA65_RS16525	0.59	+0.4
3,574,656	+		DZA65_RS16525	0.82	-1.4
3,574,660	+		DZA65_RS16525	0.83	+1.4
3,574,660	+		DZA65_RS16525	0.83	-0.3
3,574,660	+		DZA65_RS16525	0.83	-0.9
3,574,660	+		DZA65_RS16525	0.83	+0.1
3,574,660	+		DZA65_RS16525	0.83	-0.4
3,574,661	-		DZA65_RS16525	0.83	-2.8
3,574,661	-		DZA65_RS16525	0.83	+0.9
3,574,725	+				-0.2
3,574,725	+				+0.2
3,574,725	+				+0.2
3,574,726	-				-0.1
3,574,726	-				+0.2
3,574,726	-				+0.5
3,574,726	-				-0.4
3,574,726	-				-0.4
3,574,729	-				-0.4
3,574,729	-				-0.4
3,574,729	-				-0.6
3,574,729	-				-0.6
3,574,734	+				+0.2
3,574,734	+				-1.0
3,574,734	+				-0.2
3,574,734	+				+0.4
3,574,734	+				-0.2
3,574,734	+				-0.3
3,574,734	+				+0.2
3,574,734	+				-0.6
3,574,734	+				+0.1
3,574,734	+				-1.8
3,574,734	+				-0.1
3,574,734	+				+0.1
3,574,734	+				+0.4
3,574,734	+				+0.2
3,574,734	+				+0.2
3,574,734	+				+0.0
3,574,734	+				-0.9
3,574,734	+				-1.6
3,574,734	+				+1.0
3,574,735	-				+1.2
3,574,735	-				-0.8
3,574,735	-				+0.2
3,574,735	-				+0.5
3,574,735	-				-0.8
3,574,735	-				-0.4
3,574,735	-				+0.4
3,574,735	-				+0.1
3,574,735	-				-0.5
3,574,735	-				+1.9
3,574,735	-				-1.6
3,574,735	-				-2.5
3,574,735	-				+1.6
3,574,735	-				-1.5
3,574,735	-				+0.4
3,574,735	-				-0.5
3,574,735	-				-0.1
3,574,735	-				+0.0
3,574,786	+		DZA65_RS16530	0.36	-1.5
3,574,786	+		DZA65_RS16530	0.36	-0.1
3,574,786	+		DZA65_RS16530	0.36	+0.6
3,574,786	+		DZA65_RS16530	0.36	-0.9
3,574,786	+		DZA65_RS16530	0.36	-2.8
3,574,786	+		DZA65_RS16530	0.36	-0.8
3,574,786	+		DZA65_RS16530	0.36	-0.2
3,574,786	+		DZA65_RS16530	0.36	-0.1
3,574,790	+		DZA65_RS16530	0.39	+0.0
3,574,790	+		DZA65_RS16530	0.39	+0.2
3,574,790	+		DZA65_RS16530	0.39	+0.1
3,574,790	+		DZA65_RS16530	0.39	-0.7
3,574,790	+		DZA65_RS16530	0.39	+0.1
3,574,809	+		DZA65_RS16530	0.54	-0.4
3,574,810	-		DZA65_RS16530	0.55	-0.1
3,574,813	+		DZA65_RS16530	0.58	-1.5
3,574,813	+		DZA65_RS16530	0.58	-1.6
3,574,813	+		DZA65_RS16530	0.58	-1.8
3,574,850	+		DZA65_RS16530	0.88	+0.5
3,574,850	+		DZA65_RS16530	0.88	-0.9
3,574,850	+		DZA65_RS16530	0.88	+0.1
3,574,884	+				-1.1
3,574,930	-		DZA65_RS16535	0.46	+0.6
3,575,014	+				-0.9
3,575,014	+				-1.1
3,575,014	+				+0.0
3,575,014	+				-0.5
3,575,014	+				-0.7
3,575,014	+				-0.9
3,575,015	-				-0.3
3,575,015	-				+2.2
3,575,023	+				-0.8
3,575,023	+				-0.4
3,575,024	-				+0.6
3,575,069	+				-0.5
3,575,069	+				-0.6
3,575,070	-				+0.4
3,575,123	+				-0.1
3,575,123	+				+0.7
3,575,199	+				-1.1
3,575,241	+				-0.9
3,575,241	+				-0.1
3,575,241	+				+0.4
3,575,241	+				-2.6
3,575,241	+				-0.3
3,575,281	+				+0.4
3,575,281	+				-1.5
3,575,314	+				+1.8
3,575,314	+				-1.1
3,575,314	+				+0.9
3,575,314	+				+0.0
3,575,314	+				-0.5
3,575,391	+				-1.2
3,575,541	+				+0.4
3,575,566	+				+1.7
3,575,570	+				+0.9
3,575,571	-				+0.1
3,575,583	+				+1.1
3,575,584	-				-1.1
3,575,584	-				+0.9