Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16345

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,542,785	+		DZA65_RS16340	0.33	-0.4
3,542,896	+		DZA65_RS16340	0.52	+0.1
3,542,896	+		DZA65_RS16340	0.52	-0.4
3,542,998	-				-0.1
3,542,998	-		DZA65_RS16340	0.70	+0.3
3,543,003	+		DZA65_RS16340	0.71	-1.2
3,543,004	-		DZA65_RS16340	0.71	+0.5
3,543,019	+		DZA65_RS16340	0.74	-0.5
3,543,074	+		DZA65_RS16340	0.83	+2.2
3,543,074	+		DZA65_RS16340	0.83	+1.2
3,543,075	-		DZA65_RS16340	0.83	-0.5
3,543,075	-		DZA65_RS16340	0.83	+0.0
3,543,097	+		DZA65_RS16340	0.87	+0.5
3,543,097	+		DZA65_RS16340	0.87	+1.0
3,543,098	-		DZA65_RS16340	0.87	-0.7
3,543,121	+				-0.4
3,543,121	+				-1.2
3,543,121	+				-0.7
3,543,121	+				-0.2
3,543,122	-				-1.3
3,543,122	-				+0.9
3,543,152	+				+0.0
3,543,152	+				+0.2
3,543,152	+				-1.1
3,543,152	+				+0.1
3,543,153	-				-1.8
3,543,153	-				-0.8
3,543,153	-				+0.1
3,543,153	-				-0.2
3,543,153	-				+1.4
3,543,153	-				-2.3
3,543,158	-				+0.1
3,543,158	-				+0.6
3,543,158	-				-0.5
3,543,158	-				-0.5
3,543,159	+				-0.1
3,543,159	+				+0.9
3,543,159	+				-0.5
3,543,160	-				-1.3
3,543,160	-				+0.0
3,543,160	-				-1.4
3,543,160	-				-0.9
3,543,160	-				-2.1
3,543,207	-				-1.2
3,543,209	+				-0.1
3,543,210	-				-1.1
3,543,210	-				-0.3
3,543,248	+				-0.5
3,543,248	+				-1.7
3,543,248	+				-0.5
3,543,248	+				+0.4
3,543,248	+				-1.0
3,543,249	-				+1.1
3,543,249	-				+0.2
3,543,249	-				-2.2
3,543,249	-				+1.1
3,543,249	-				-1.1
3,543,252	+				-0.7
3,543,252	+				+0.1
3,543,252	+				-0.2
3,543,252	+				+0.1
3,543,252	+				+0.7
3,543,252	+				+0.5
3,543,252	+				-2.2
3,543,253	-				-0.1
3,543,253	-				+0.3
3,543,253	-				+1.2
3,543,253	-				-1.9
3,543,253	-				+0.6
3,543,253	-				+0.2
3,543,253	-				-1.7
3,543,253	-				-0.7
3,543,364	+				-1.7
3,543,364	+				-1.2
3,543,365	-				+0.1
3,543,365	-				-0.2
3,543,365	-				-1.7
3,543,365	-				-1.8
3,543,365	-				-0.3
3,543,365	-				+0.2
3,543,381	+				+0.7
3,543,382	-				+0.4
3,543,469	+				-0.1
3,543,469	+				-1.9
3,543,516	-				-0.8
3,543,537	+				+0.8
3,543,537	+				-0.8
3,543,538	-				-0.6
3,543,538	-				-1.1
3,543,538	-				+0.1
3,543,557	-				+0.3
3,543,569	+				+0.3
3,543,569	+				+0.5
3,543,569	+				+0.8
3,543,569	+				-2.0
3,543,570	-				-2.1
3,543,570	-				-1.1
3,543,570	-				-1.7
3,543,570	-				-0.1
3,543,570	-				-2.1
3,543,581	+				-2.1
3,543,581	+				-0.4
3,543,581	+				-0.1
3,543,581	+				-0.2
3,543,582	-				+0.3
3,543,582	-				-0.3
3,543,582	-				+0.3
3,543,589	+				-1.2
3,543,589	+				-0.5
3,543,589	+				+0.9
3,543,590	-				-0.5
3,543,590	-				+0.0
3,543,590	-				+0.3
3,543,644	-				+0.3
3,543,663	-				-0.7
3,543,701	+				-0.5
3,543,701	+				-0.6
3,543,706	-				-0.0
3,543,706	-				+1.2
3,543,706	-				-0.1
3,543,729	-				+0.1
3,543,767	+				+0.1
3,543,767	+				-0.7
3,543,767	+				+1.4
3,543,767	+				-0.7
3,543,768	-				+0.2
3,543,768	-				-0.5
3,543,779	+				-0.3
3,543,780	-		DZA65_RS16345	0.10	-0.1
3,543,780	-		DZA65_RS16345	0.10	+2.9
3,543,806	-		DZA65_RS16345	0.15	-0.2
3,543,892	+		DZA65_RS16345	0.32	-0.5
3,543,961	-		DZA65_RS16345	0.45	+0.2
3,543,961	-		DZA65_RS16345	0.45	+0.9
3,543,963	+		DZA65_RS16345	0.45	-0.1
3,543,963	+		DZA65_RS16345	0.45	-0.3
3,543,963	+		DZA65_RS16345	0.45	-0.1
3,543,963	+		DZA65_RS16345	0.45	-1.1
3,543,964	-		DZA65_RS16345	0.45	+1.3
3,543,964	-		DZA65_RS16345	0.45	+0.3
3,543,964	-		DZA65_RS16345	0.45	+0.3
3,543,964	-		DZA65_RS16345	0.45	-0.5
3,543,964	-		DZA65_RS16345	0.45	-0.4
3,543,964	-		DZA65_RS16345	0.45	+0.9
3,543,964	-		DZA65_RS16345	0.45	-1.2
3,543,973	+		DZA65_RS16345	0.47	+0.7
3,543,973	+		DZA65_RS16345	0.47	-0.2
3,543,974	-		DZA65_RS16345	0.47	+0.2
3,543,974	-		DZA65_RS16345	0.47	-2.8
3,543,974	-		DZA65_RS16345	0.47	-0.7
3,544,056	+		DZA65_RS16345	0.63	+0.9
3,544,056	+		DZA65_RS16345	0.63	+0.5
3,544,057	-		DZA65_RS16345	0.63	+0.6
3,544,171	+		DZA65_RS16345	0.85	+1.3
3,544,171	+		DZA65_RS16345	0.85	+0.0
3,544,171	+		DZA65_RS16345	0.85	-0.1
3,544,171	+		DZA65_RS16345	0.85	+0.0
3,544,171	+		DZA65_RS16345	0.85	-0.3
3,544,171	+		DZA65_RS16345	0.85	+0.6
3,544,171	+		DZA65_RS16345	0.85	+0.6
3,544,172	-		DZA65_RS16345	0.85	+0.3
3,544,172	-		DZA65_RS16345	0.85	+0.1
3,544,172	-		DZA65_RS16345	0.85	+0.6
3,544,231	+				-1.1
3,544,231	+				+0.5
3,544,232	-				+0.1
3,544,232	-				-1.7
3,544,232	-				-0.8
3,544,242	+				-0.4
3,544,248	+				-0.1
3,544,248	+				+0.2
3,544,248	+				-2.5
3,544,248	+				+0.0
3,544,248	+				-0.5
3,544,248	+				-1.9
3,544,248	+				-0.4
3,544,248	+				-2.3
3,544,248	+				-0.9
3,544,248	+				+0.6
3,544,249	-				-0.0
3,544,249	-				+0.3
3,544,249	-				-1.0
3,544,249	-				+0.2
3,544,249	-				-0.1
3,544,249	-				-0.8
3,544,249	-				-0.2
3,544,249	-				-0.2
3,544,307	+		DZA65_RS16350	0.16	-2.2
3,544,307	+		DZA65_RS16350	0.16	+0.0
3,544,308	-		DZA65_RS16350	0.16	-0.7
3,544,317	+		DZA65_RS16350	0.18	+1.7
3,544,317	+		DZA65_RS16350	0.18	-0.9
3,544,343	+		DZA65_RS16350	0.24	-1.7
3,544,343	+		DZA65_RS16350	0.24	-0.6
3,544,344	-		DZA65_RS16350	0.24	-0.1
3,544,366	-		DZA65_RS16350	0.29	+0.3
3,544,403	+		DZA65_RS16350	0.36	-0.4
3,544,405	+		DZA65_RS16350	0.37	-0.5
3,544,405	+		DZA65_RS16350	0.37	-0.6
3,544,405	+		DZA65_RS16350	0.37	+0.5
3,544,405	+		DZA65_RS16350	0.37	-0.5
3,544,405	+		DZA65_RS16350	0.37	+0.3
3,544,405	+		DZA65_RS16350	0.37	+0.8
3,544,406	-		DZA65_RS16350	0.37	+0.7
3,544,406	-				+0.5
3,544,500	+		DZA65_RS16350	0.57	+0.9
3,544,500	+		DZA65_RS16350	0.57	+1.7
3,544,526	+		DZA65_RS16350	0.62	-0.1
3,544,528	+		DZA65_RS16350	0.63	+0.1
3,544,528	+		DZA65_RS16350	0.63	+0.2
3,544,568	-		DZA65_RS16350	0.71	+0.5
3,544,568	-		DZA65_RS16350	0.71	+0.3
3,544,568	-		DZA65_RS16350	0.71	+0.5
3,544,608	-		DZA65_RS16350	0.80	-1.1
3,544,608	-		DZA65_RS16350	0.80	+0.2
3,544,610	-		DZA65_RS16350	0.80	-0.5
3,544,610	-		DZA65_RS16350	0.80	-0.6
3,544,676	+				-1.9
3,544,677	-				-0.5
3,544,677	-				-1.1
3,544,691	+				-1.4
3,544,691	+				-2.2
3,544,789	+		DZA65_RS16355	0.34	-1.9
3,544,850	+		DZA65_RS16355	0.55	-0.7
3,544,850	+		DZA65_RS16355	0.55	-0.9
3,544,850	+		DZA65_RS16355	0.55	-0.4
3,544,850	+		DZA65_RS16355	0.55	+0.3
3,544,850	+		DZA65_RS16355	0.55	-0.7
3,544,850	+		DZA65_RS16355	0.55	+0.1
3,544,851	-		DZA65_RS16355	0.55	+0.3
3,544,851	-		DZA65_RS16355	0.55	+0.3
3,544,863	+		DZA65_RS16355	0.59	+0.1
3,544,899	+		DZA65_RS16355	0.72	-0.4
3,544,899	+		DZA65_RS16355	0.72	-0.7
3,544,900	-		DZA65_RS16355	0.72	-0.6
3,544,900	-		DZA65_RS16355	0.72	-0.1
3,544,900	-		DZA65_RS16355	0.72	-0.9
3,544,900	-		DZA65_RS16355	0.72	+0.4
3,544,924	+		DZA65_RS16355	0.80	-0.4
3,544,925	-		DZA65_RS16355	0.81	-1.9
3,544,952	+				-1.4
3,544,952	+				+0.4
3,544,952	+				-0.7
3,544,953	-				-2.2
3,544,971	+				-0.9
3,544,971	+				+0.2
3,544,972	-				-1.1
3,544,972	-				+0.3
3,545,006	+				+0.7
3,545,006	+				+0.0
3,545,007	-				-0.4
3,545,007	-				-1.2
3,545,007	-				-0.4
3,545,007	-				-1.4
3,545,033	+				+0.9
3,545,034	-				+0.2
3,545,034	-				-1.7
3,545,034	-				+0.1
3,545,034	-				-3.0
3,545,044	+				-1.5
3,545,045	-				-0.1
3,545,045	-				+0.3
3,545,045	-				-0.3
3,545,045	-				-0.2
3,545,046	+				+0.1
3,545,046	+				-0.3
3,545,046	+				-0.9
3,545,046	+				+0.4
3,545,046	+				+1.2
3,545,047	-				+1.7
3,545,047	-				-0.3
3,545,047	-				+0.2
3,545,047	-				-0.5
3,545,047	-				-0.2
3,545,047	-				-0.1
3,545,047	-				-0.1
3,545,047	-				-1.1
3,545,047	-				+0.2
3,545,062	+				-0.1
3,545,062	+				-0.5
3,545,062	+				+0.1
3,545,062	+				+0.0
3,545,062	+				-0.4
3,545,063	-				-1.1
3,545,063	-				+0.3
3,545,063	-				-2.0
3,545,162	-		DZA65_RS16360	0.15	-1.1
3,545,162	-		DZA65_RS16360	0.15	+0.9
3,545,205	+		DZA65_RS16360	0.19	+1.8
3,545,205	+		DZA65_RS16360	0.19	+0.9
3,545,206	-		DZA65_RS16360	0.19	-2.8