Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14920

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,252,068	-		DZA65_RS14915	0.46	-1.0
3,252,068	-		DZA65_RS14915	0.46	-0.5
3,252,068	-		DZA65_RS14915	0.46	-1.2
3,252,068	-		DZA65_RS14915	0.46	-0.2
3,252,259	+		DZA65_RS14915	0.67	+0.0
3,252,292	+		DZA65_RS14915	0.71	-1.3
3,252,293	-		DZA65_RS14915	0.71	-0.7
3,252,366	+		DZA65_RS14915	0.79	+0.2
3,252,367	-		DZA65_RS14915	0.80	+0.2
3,252,431	+		DZA65_RS14915	0.87	-0.1
3,252,431	+		DZA65_RS14915	0.87	-1.0
3,252,432	-		DZA65_RS14915	0.87	-0.3
3,252,479	-				-0.7
3,252,593	-				-1.2
3,252,655	-				+0.7
3,252,672	-				-1.0
3,252,672	-				-1.4
3,252,674	+				-0.9
3,252,734	+				-0.2
3,252,791	+				-0.2
3,252,791	+				-0.1
3,252,791	+				-1.0
3,252,791	+				-2.0
3,252,791	+				-0.8
3,252,791	+				-0.9
3,252,791	+				-1.2
3,252,792	-				-0.2
3,252,792	-				-1.0
3,252,792	-				-1.0
3,252,795	+				+1.0
3,252,795	+				-0.2
3,252,795	+				-1.0
3,252,796	-				-0.3
3,252,796	-				-0.7
3,252,796	-				+0.2
3,252,796	-				-0.4
3,252,796	-				+0.3
3,252,796	-				+0.0
3,252,796	-				-1.6
3,252,796	-				+0.0
3,252,796	-				+0.1
3,252,801	-				+0.2
3,252,801	-				+0.8
3,252,826	+				-0.7
3,252,837	-				-0.9
3,252,855	+				-1.7
3,252,855	+				-1.5
3,252,856	-				+0.8
3,252,856	-				-0.6
3,252,856	-				+0.4
3,252,936	+				-0.2
3,252,937	-				+0.4
3,252,937	-				+1.1
3,253,053	-				-0.7
3,253,053	-				-0.7
3,253,067	-				-0.7
3,253,068	+				-1.3
3,253,068	+				-0.3
3,253,068	+				+0.4
3,253,068	+				+0.5
3,253,068	+				+0.3
3,253,068	+				-0.7
3,253,069	-				-0.2
3,253,069	-				-1.1
3,253,069	-				-0.4
3,253,069	-				-0.3
3,253,069	-				+0.2
3,253,104	+				-0.0
3,253,105	-				-0.8
3,253,124	+				-0.1
3,253,125	-				-0.8
3,253,140	-				-0.9
3,253,140	-				-1.0
3,253,140	-				-0.0
3,253,140	-				+0.1
3,253,254	+		DZA65_RS14920	0.14	-0.3
3,253,255	-		DZA65_RS14920	0.14	-0.2
3,253,255	-		DZA65_RS14920	0.14	-0.3
3,253,288	+		DZA65_RS14920	0.15	-1.5
3,253,289	-		DZA65_RS14920	0.16	+1.3
3,253,311	+		DZA65_RS14920	0.17	-0.6
3,253,312	-		DZA65_RS14920	0.17	-0.3
3,253,357	+		DZA65_RS14920	0.19	-1.0
3,253,358	-		DZA65_RS14920	0.19	-0.8
3,253,358	-		DZA65_RS14920	0.19	+0.2
3,253,358	-		DZA65_RS14920	0.19	+0.4
3,253,377	+		DZA65_RS14920	0.20	+0.5
3,253,377	+		DZA65_RS14920	0.20	-0.2
3,253,377	+		DZA65_RS14920	0.20	-0.6
3,253,377	+		DZA65_RS14920	0.20	+0.8
3,253,377	+		DZA65_RS14920	0.20	-0.5
3,253,378	-		DZA65_RS14920	0.20	-0.8
3,253,378	-		DZA65_RS14920	0.20	-0.3
3,253,378	-		DZA65_RS14920	0.20	-0.1
3,253,386	-		DZA65_RS14920	0.20	-3.1
3,253,386	-		DZA65_RS14920	0.20	+0.3
3,253,412	-		DZA65_RS14920	0.21	-2.2
3,253,441	+		DZA65_RS14920	0.23	-0.9
3,253,442	-		DZA65_RS14920	0.23	-0.0
3,253,442	-		DZA65_RS14920	0.23	-1.8
3,253,460	-		DZA65_RS14920	0.23	-0.3
3,253,540	+		DZA65_RS14920	0.27	-0.5
3,253,563	+		DZA65_RS14920	0.28	+0.0
3,253,563	+		DZA65_RS14920	0.28	-0.1
3,253,564	-		DZA65_RS14920	0.28	-0.7
3,253,564	-		DZA65_RS14920	0.28	-1.0
3,253,564	-		DZA65_RS14920	0.28	+0.8
3,253,564	-		DZA65_RS14920	0.28	-0.0
3,253,564	-		DZA65_RS14920	0.28	-1.2
3,253,564	-		DZA65_RS14920	0.28	-0.5
3,253,597	+		DZA65_RS14920	0.30	-0.0
3,253,598	-		DZA65_RS14920	0.30	-0.5
3,253,598	-		DZA65_RS14920	0.30	-0.9
3,253,641	+		DZA65_RS14920	0.32	-1.2
3,253,642	-		DZA65_RS14920	0.32	+0.8
3,253,642	-		DZA65_RS14920	0.32	-0.1
3,253,659	-				-1.5
3,253,831	-		DZA65_RS14920	0.40	-0.2
3,253,841	+		DZA65_RS14920	0.41	-0.4
3,253,842	-		DZA65_RS14920	0.41	+0.7
3,253,842	-		DZA65_RS14920	0.41	+0.1
3,253,842	-		DZA65_RS14920	0.41	+0.5
3,253,848	-		DZA65_RS14920	0.41	-0.4
3,253,910	+		DZA65_RS14920	0.44	-0.2
3,253,911	-		DZA65_RS14920	0.44	-2.2
3,253,911	-		DZA65_RS14920	0.44	-0.2
3,253,949	+		DZA65_RS14920	0.46	-0.4
3,253,950	-		DZA65_RS14920	0.46	-0.9
3,253,978	-		DZA65_RS14920	0.47	-0.2
3,253,978	-		DZA65_RS14920	0.47	-0.8
3,253,978	-		DZA65_RS14920	0.47	-0.6
3,254,018	+		DZA65_RS14920	0.49	-0.5
3,254,019	-		DZA65_RS14920	0.49	-0.9
3,254,019	-		DZA65_RS14920	0.49	+0.4
3,254,024	-		DZA65_RS14920	0.49	+0.0
3,254,081	+		DZA65_RS14920	0.52	-0.6
3,254,081	+		DZA65_RS14920	0.52	-0.0
3,254,081	+		DZA65_RS14920	0.52	-0.0
3,254,082	-		DZA65_RS14920	0.52	+0.0
3,254,102	-		DZA65_RS14920	0.53	-0.5
3,254,102	-				+1.1
3,254,178	+		DZA65_RS14920	0.56	+0.2
3,254,179	-		DZA65_RS14920	0.56	-0.6
3,254,179	-		DZA65_RS14920	0.56	+0.5
3,254,179	-		DZA65_RS14920	0.56	-0.4
3,254,457	+		DZA65_RS14920	0.69	-0.4
3,254,479	+		DZA65_RS14920	0.70	-0.4
3,254,480	-		DZA65_RS14920	0.70	-0.9
3,254,480	-		DZA65_RS14920	0.70	+1.0
3,254,496	+				+1.4
3,254,496	+		DZA65_RS14920	0.71	+0.0
3,254,497	-		DZA65_RS14920	0.71	-1.9
3,254,497	-		DZA65_RS14920	0.71	-1.2
3,254,497	-		DZA65_RS14920	0.71	-1.0
3,254,502	+		DZA65_RS14920	0.71	+0.7
3,254,502	+		DZA65_RS14920	0.71	-0.3
3,254,600	-		DZA65_RS14920	0.76	-0.3
3,254,671	+		DZA65_RS14920	0.79	-1.2
3,254,695	+		DZA65_RS14920	0.80	-2.3
3,254,696	-		DZA65_RS14920	0.80	+1.6
3,254,696	-		DZA65_RS14920	0.80	-0.0
3,254,743	+		DZA65_RS14920	0.82	-2.2
3,254,744	-		DZA65_RS14920	0.82	+0.1
3,254,744	-		DZA65_RS14920	0.82	-0.5
3,254,752	+		DZA65_RS14920	0.83	-1.3
3,254,752	+		DZA65_RS14920	0.83	+0.7
3,254,752	+		DZA65_RS14920	0.83	+0.4
3,254,753	-		DZA65_RS14920	0.83	-0.9
3,254,753	-		DZA65_RS14920	0.83	-0.8
3,254,753	-		DZA65_RS14920	0.83	-1.2
3,254,753	-		DZA65_RS14920	0.83	+0.2
3,254,753	-		DZA65_RS14920	0.83	+0.5
3,254,753	-		DZA65_RS14920	0.83	-2.0
3,254,753	-		DZA65_RS14920	0.83	-0.6
3,254,756	+		DZA65_RS14920	0.83	+0.2
3,254,756	+		DZA65_RS14920	0.83	-0.4
3,254,757	-		DZA65_RS14920	0.83	-1.6
3,254,757	-		DZA65_RS14920	0.83	-0.2
3,254,757	-		DZA65_RS14920	0.83	+0.2
3,254,757	-		DZA65_RS14920	0.83	-1.0
3,254,757	-		DZA65_RS14920	0.83	-0.4
3,254,838	+		DZA65_RS14920	0.87	-0.3
3,254,838	+		DZA65_RS14920	0.87	+0.3
3,254,838	+		DZA65_RS14920	0.87	-0.8
3,254,839	-		DZA65_RS14920	0.87	+0.1
3,254,839	-		DZA65_RS14920	0.87	-0.8
3,254,839	-		DZA65_RS14920	0.87	+0.5
3,254,847	-		DZA65_RS14920	0.87	+0.8
3,254,902	-		DZA65_RS14920	0.90	+0.6
3,254,922	+				-0.4
3,254,923	-				-1.5
3,254,923	-				+0.6
3,254,977	+				+0.3
3,254,978	-				-0.9
3,254,978	-				-0.4
3,254,978	-				-1.2
3,254,978	-				-1.9
3,254,978	-				+1.2
3,254,982	-				+0.8
3,254,982	-				-0.1
3,254,982	-				-0.6
3,255,012	-				-0.3
3,255,086	+				-1.0
3,255,150	+				-0.6
3,255,151	-				+0.1
3,255,151	-				+0.5
3,255,318	+				-0.4
3,255,319	-				-0.1
3,255,344	+				+0.1
3,255,372	+				-0.9
3,255,373	-				+0.3
3,255,373	-				-1.8
3,255,487	+				-0.9
3,255,491	-				-0.3
3,255,491	-				-0.7
3,255,528	-				-0.0
3,255,541	+				-0.2