Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14870

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,241,021	-		DZA65_RS14860	0.67	-2.0
3,241,090	+		DZA65_RS14860	0.73	-0.2
3,241,090	+		DZA65_RS14860	0.73	-0.1
3,241,091	-		DZA65_RS14860	0.73	-2.3
3,241,105	+		DZA65_RS14860	0.75	-0.5
3,241,309	+				-1.0
3,241,310	-				-0.4
3,241,310	-				+0.4
3,241,380	+				-1.6
3,241,380	+				-1.1
3,241,380	+				+0.1
3,241,380	+				-0.5
3,241,380	+				-0.8
3,241,380	+				+1.1
3,241,380	+				-0.1
3,241,381	-				+1.5
3,241,381	-				+0.1
3,241,381	-				+2.0
3,241,381	-				-0.7
3,241,381	-				-2.0
3,241,381	-				+0.6
3,241,387	+				+0.2
3,241,387	+				-0.5
3,241,387	+				+0.1
3,241,387	+				-0.4
3,241,387	+				-0.6
3,241,387	+				-2.0
3,241,387	+				+0.5
3,241,388	-				+0.5
3,241,388	-				-0.9
3,241,388	-				-0.7
3,241,388	-				+0.8
3,241,388	-				-0.0
3,241,388	-				-1.5
3,241,388	-				+0.8
3,241,388	-				-0.4
3,241,388	-				+0.0
3,241,388	-				-0.1
3,241,388	-				-1.5
3,241,509	+		DZA65_RS14865	0.47	+0.3
3,241,509	+		DZA65_RS14865	0.47	+0.3
3,241,509	+		DZA65_RS14865	0.47	+0.2
3,241,509	+		DZA65_RS14865	0.47	-1.0
3,241,509	+		DZA65_RS14865	0.47	-0.5
3,241,509	+		DZA65_RS14865	0.47	+1.0
3,241,509	+		DZA65_RS14865	0.47	-0.4
3,241,509	+		DZA65_RS14865	0.47	+0.2
3,241,509	+		DZA65_RS14865	0.47	-2.3
3,241,509	+		DZA65_RS14865	0.47	-2.2
3,241,509	+		DZA65_RS14865	0.47	+0.8
3,241,509	+		DZA65_RS14865	0.47	-0.1
3,241,509	+		DZA65_RS14865	0.47	+0.1
3,241,509	+		DZA65_RS14865	0.47	-0.9
3,241,509	+		DZA65_RS14865	0.47	-0.6
3,241,510	-		DZA65_RS14865	0.47	-0.7
3,241,510	-		DZA65_RS14865	0.47	+0.1
3,241,510	-		DZA65_RS14865	0.47	+0.8
3,241,510	-		DZA65_RS14865	0.47	-0.3
3,241,510	-		DZA65_RS14865	0.47	-0.2
3,241,510	-		DZA65_RS14865	0.47	-0.1
3,241,510	-		DZA65_RS14865	0.47	-0.6
3,241,565	+		DZA65_RS14865	0.66	-1.2
3,241,609	+		DZA65_RS14865	0.82	-0.3
3,241,665	+				-0.5
3,241,665	+				+0.8
3,241,666	-				-0.8
3,241,676	+				+0.3
3,241,677	-				+0.6
3,241,755	-				-0.9
3,241,755	-				-0.9
3,241,835	+		DZA65_RS14870	0.15	+0.5
3,241,835	+		DZA65_RS14870	0.15	+0.7
3,241,836	-		DZA65_RS14870	0.15	+0.5
3,241,836	-		DZA65_RS14870	0.15	+1.6
3,241,903	+		DZA65_RS14870	0.21	-0.2
3,241,903	+		DZA65_RS14870	0.21	-0.4
3,241,903	+		DZA65_RS14870	0.21	-0.3
3,241,903	+		DZA65_RS14870	0.21	-1.3
3,241,903	+		DZA65_RS14870	0.21	-0.5
3,241,903	+		DZA65_RS14870	0.21	+0.5
3,241,903	+		DZA65_RS14870	0.21	-0.6
3,241,903	+		DZA65_RS14870	0.21	+0.1
3,241,903	+		DZA65_RS14870	0.21	-1.3
3,241,903	+		DZA65_RS14870	0.21	+0.6
3,241,903	+		DZA65_RS14870	0.21	-0.8
3,241,903	+		DZA65_RS14870	0.21	-0.9
3,241,903	+		DZA65_RS14870	0.21	-1.6
3,241,903	+		DZA65_RS14870	0.21	-0.1
3,241,903	+		DZA65_RS14870	0.21	-0.6
3,241,903	+		DZA65_RS14870	0.21	-0.3
3,241,903	+		DZA65_RS14870	0.21	-0.0
3,241,903	+		DZA65_RS14870	0.21	-1.4
3,241,903	+		DZA65_RS14870	0.21	-1.5
3,241,903	+		DZA65_RS14870	0.21	-0.4
3,241,903	+		DZA65_RS14870	0.21	-1.0
3,241,904	-		DZA65_RS14870	0.21	-0.3
3,241,904	-		DZA65_RS14870	0.21	-0.7
3,241,904	-		DZA65_RS14870	0.21	-2.9
3,241,904	-				-0.2
3,241,904	-		DZA65_RS14870	0.21	+0.4
3,241,904	-		DZA65_RS14870	0.21	-1.3
3,241,904	-		DZA65_RS14870	0.21	-1.0
3,241,904	-				-1.2
3,241,904	-		DZA65_RS14870	0.21	-0.9
3,241,904	-		DZA65_RS14870	0.21	-0.6
3,241,904	-		DZA65_RS14870	0.21	+0.1
3,241,904	-		DZA65_RS14870	0.21	+1.1
3,241,904	-		DZA65_RS14870	0.21	-0.2
3,241,904	-		DZA65_RS14870	0.21	-0.9
3,241,904	-		DZA65_RS14870	0.21	-0.2
3,241,904	-		DZA65_RS14870	0.21	-0.5
3,241,904	-		DZA65_RS14870	0.21	-0.6
3,241,904	-		DZA65_RS14870	0.21	-0.3
3,241,904	-		DZA65_RS14870	0.21	+0.1
3,241,904	-		DZA65_RS14870	0.21	-0.9
3,241,911	+		DZA65_RS14870	0.22	-2.0
3,241,911	+		DZA65_RS14870	0.22	-0.8
3,241,912	-		DZA65_RS14870	0.22	+0.8
3,241,912	-		DZA65_RS14870	0.22	+0.0
3,242,216	-		DZA65_RS14870	0.49	+0.1
3,242,225	+		DZA65_RS14870	0.50	-0.4
3,242,225	+		DZA65_RS14870	0.50	+0.1
3,242,225	+		DZA65_RS14870	0.50	-0.1
3,242,226	-		DZA65_RS14870	0.50	-1.2
3,242,226	-		DZA65_RS14870	0.50	-0.0
3,242,345	+		DZA65_RS14870	0.60	-0.1
3,242,346	-		DZA65_RS14870	0.60	-0.7
3,242,346	-		DZA65_RS14870	0.60	+0.1
3,242,346	-		DZA65_RS14870	0.60	+0.5
3,242,407	-		DZA65_RS14870	0.66	-0.9
3,242,571	+		DZA65_RS14870	0.80	-1.0
3,242,598	+		DZA65_RS14870	0.83	+0.3
3,242,598	+		DZA65_RS14870	0.83	-1.2
3,242,598	+		DZA65_RS14870	0.83	-0.2
3,242,599	-		DZA65_RS14870	0.83	-0.7
3,242,599	-		DZA65_RS14870	0.83	-0.2
3,242,599	-		DZA65_RS14870	0.83	+0.6
3,242,599	-				-0.8
3,242,599	-		DZA65_RS14870	0.83	-0.0
3,242,601	+		DZA65_RS14870	0.83	-0.6
3,242,601	+		DZA65_RS14870	0.83	-0.7
3,242,601	+		DZA65_RS14870	0.83	-0.2
3,242,601	+		DZA65_RS14870	0.83	-0.1
3,242,601	+		DZA65_RS14870	0.83	-0.2
3,242,601	+		DZA65_RS14870	0.83	-1.2
3,242,601	+		DZA65_RS14870	0.83	+0.8
3,242,601	+		DZA65_RS14870	0.83	+0.4
3,242,602	-		DZA65_RS14870	0.83	+0.2
3,242,602	-		DZA65_RS14870	0.83	-0.9
3,242,602	-		DZA65_RS14870	0.83	+0.4
3,242,602	-		DZA65_RS14870	0.83	+0.8
3,242,602	-		DZA65_RS14870	0.83	-0.9
3,242,602	-		DZA65_RS14870	0.83	-1.2
3,242,602	-		DZA65_RS14870	0.83	-1.5
3,242,602	-		DZA65_RS14870	0.83	-2.0
3,242,602	-		DZA65_RS14870	0.83	+0.4
3,242,602	-		DZA65_RS14870	0.83	-0.6
3,242,602	-				-0.2
3,242,602	-		DZA65_RS14870	0.83	-1.9
3,242,602	-		DZA65_RS14870	0.83	+0.3
3,242,602	-		DZA65_RS14870	0.83	-2.2
3,242,604	+		DZA65_RS14870	0.83	-1.8
3,242,604	+		DZA65_RS14870	0.83	-0.4
3,242,604	+		DZA65_RS14870	0.83	+0.1
3,242,604	+		DZA65_RS14870	0.83	-0.2
3,242,605	-		DZA65_RS14870	0.83	-0.6
3,242,605	-		DZA65_RS14870	0.83	-0.6
3,242,642	+		DZA65_RS14870	0.87	-0.9
3,242,643	-		DZA65_RS14870	0.87	-0.6
3,242,643	-		DZA65_RS14870	0.87	-0.4
3,242,710	+				+1.6
3,242,711	-				+1.6
3,242,750	+				+0.6
3,242,751	-				+0.2
3,242,751	-				-0.8
3,242,751	-				-0.4
3,242,785	+				+0.2
3,242,795	+				+0.0
3,242,825	+				+0.1
3,242,825	+				-0.2
3,242,857	+				+0.1
3,242,912	+		DZA65_RS14875	0.16	+0.1
3,242,912	+		DZA65_RS14875	0.16	+0.5
3,242,912	+		DZA65_RS14875	0.16	+0.2
3,243,175	+				-0.6
3,243,175	+				-0.1
3,243,175	+				-0.8
3,243,368	+		DZA65_RS14880	0.31	-0.2
3,243,368	+		DZA65_RS14880	0.31	-3.1
3,243,369	-		DZA65_RS14880	0.32	-0.7
3,243,369	-		DZA65_RS14880	0.32	+0.1
3,243,484	+		DZA65_RS14880	0.52	-0.1
3,243,546	+		DZA65_RS14880	0.63	-0.3
3,243,547	-		DZA65_RS14880	0.63	-2.3
3,243,547	-		DZA65_RS14880	0.63	-0.2
3,243,600	+		DZA65_RS14880	0.72	+0.2
3,243,600	+		DZA65_RS14880	0.72	+0.2
3,243,601	-		DZA65_RS14880	0.72	+0.8
3,243,601	-		DZA65_RS14880	0.72	+0.8
3,243,601	-		DZA65_RS14880	0.72	-0.8
3,243,601	-		DZA65_RS14880	0.72	+1.0
3,243,697	+		DZA65_RS14880	0.89	-0.1
3,243,711	+				-0.3
3,243,711	+				-0.0
3,243,712	-				+0.0
3,243,712	-				-0.1
3,243,712	-				-0.6
3,243,756	+				+0.5
3,243,756	+				-1.8
3,243,756	+				-0.2
3,243,756	+				+0.1
3,243,756	+				+0.0
3,243,756	+				-0.3
3,243,756	+				-0.3
3,243,756	+				+0.5
3,243,756	+				-0.4
3,243,756	+				-0.1
3,243,756	+				+0.4
3,243,757	-				-0.8
3,243,757	-				-0.2
3,243,757	-				+0.6
3,243,757	-				-0.3
3,243,757	-				-0.9
3,243,757	-				-0.7
3,243,757	-				+0.1
3,243,757	-				+2.1
3,243,757	-				-0.3
3,243,757	-				+0.6
3,243,757	-				+0.4
3,243,757	-				-0.4