Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14860

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS14855 and DZA65_RS14860 are separated by 0 nucleotidesDZA65_RS14860 and DZA65_RS14865 overlap by 14 nucleotidesDZA65_RS14865 and DZA65_RS14870 are separated by 2 nucleotides DZA65_RS14855: DZA65_RS14855 - hydrogenase expression/formation protein HypE, at 3,239,243 to 3,240,271 _RS14855 DZA65_RS14860: DZA65_RS14860 - hydrogenase formation protein HypD, at 3,240,272 to 3,241,387 _RS14860 DZA65_RS14865: DZA65_RS14865 - hydrogenase maturation factor HybG, at 3,241,374 to 3,241,661 _RS14865 DZA65_RS14870: DZA65_RS14870 - hydrogenase nickel incorporation protein HypB, at 3,241,664 to 3,242,791 _RS14870 Position (kb) 3240 3241 3242Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3239.318 kb on + strandat 3239.319 kb on - strandat 3239.319 kb on - strandat 3239.319 kb on - strandat 3239.319 kb on - strandat 3239.522 kb on + strand, within DZA65_RS14855at 3239.522 kb on + strand, within DZA65_RS14855at 3239.523 kb on - strand, within DZA65_RS14855at 3239.523 kb on - strand, within DZA65_RS14855at 3239.873 kb on + strand, within DZA65_RS14855at 3239.874 kb on - strand, within DZA65_RS14855at 3239.874 kb on - strand, within DZA65_RS14855at 3239.976 kb on + strand, within DZA65_RS14855at 3239.976 kb on + strand, within DZA65_RS14855at 3239.977 kb on - strand, within DZA65_RS14855at 3239.977 kb on - strand, within DZA65_RS14855at 3240.075 kb on + strand, within DZA65_RS14855at 3240.075 kb on + strand, within DZA65_RS14855at 3240.075 kb on + strand, within DZA65_RS14855at 3240.075 kb on + strand, within DZA65_RS14855at 3240.075 kb on + strand, within DZA65_RS14855at 3240.075 kb on + strand, within DZA65_RS14855at 3240.075 kb on + strand, within DZA65_RS14855at 3240.075 kb on + strand, within DZA65_RS14855at 3240.075 kb on + strand, within DZA65_RS14855at 3240.076 kb on - strand, within DZA65_RS14855at 3240.076 kb on - strand, within DZA65_RS14855at 3240.076 kb on - strand, within DZA65_RS14855at 3240.076 kb on - strand, within DZA65_RS14855at 3240.076 kb on - strandat 3240.076 kb on - strand, within DZA65_RS14855at 3240.197 kb on + strandat 3240.197 kb on + strandat 3240.197 kb on + strandat 3240.197 kb on + strandat 3240.198 kb on - strandat 3240.198 kb on - strandat 3240.257 kb on + strandat 3240.257 kb on + strandat 3240.258 kb on - strandat 3240.258 kb on - strandat 3240.258 kb on - strandat 3240.297 kb on + strandat 3240.298 kb on - strandat 3240.298 kb on - strandat 3240.298 kb on - strandat 3240.298 kb on - strandat 3240.300 kb on + strandat 3240.300 kb on + strandat 3240.300 kb on + strandat 3240.301 kb on - strandat 3240.301 kb on - strandat 3240.301 kb on - strandat 3240.359 kb on - strandat 3240.395 kb on - strand, within DZA65_RS14860at 3240.395 kb on - strand, within DZA65_RS14860at 3240.410 kb on + strand, within DZA65_RS14860at 3240.463 kb on + strand, within DZA65_RS14860at 3240.492 kb on + strand, within DZA65_RS14860at 3240.492 kb on + strand, within DZA65_RS14860at 3240.619 kb on + strand, within DZA65_RS14860at 3240.620 kb on - strand, within DZA65_RS14860at 3241.021 kb on - strand, within DZA65_RS14860at 3241.090 kb on + strand, within DZA65_RS14860at 3241.090 kb on + strand, within DZA65_RS14860at 3241.091 kb on - strand, within DZA65_RS14860at 3241.105 kb on + strand, within DZA65_RS14860at 3241.309 kb on + strandat 3241.310 kb on - strandat 3241.310 kb on - strandat 3241.380 kb on + strandat 3241.380 kb on + strandat 3241.380 kb on + strandat 3241.380 kb on + strandat 3241.380 kb on + strandat 3241.380 kb on + strandat 3241.380 kb on + strandat 3241.381 kb on - strandat 3241.381 kb on - strandat 3241.381 kb on - strandat 3241.381 kb on - strandat 3241.381 kb on - strandat 3241.381 kb on - strandat 3241.387 kb on + strandat 3241.387 kb on + strandat 3241.387 kb on + strandat 3241.387 kb on + strandat 3241.387 kb on + strandat 3241.387 kb on + strandat 3241.387 kb on + strandat 3241.388 kb on - strandat 3241.388 kb on - strandat 3241.388 kb on - strandat 3241.388 kb on - strandat 3241.388 kb on - strandat 3241.388 kb on - strandat 3241.388 kb on - strandat 3241.388 kb on - strandat 3241.388 kb on - strandat 3241.388 kb on - strandat 3241.388 kb on - strandat 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.510 kb on - strand, within DZA65_RS14865at 3241.510 kb on - strand, within DZA65_RS14865at 3241.510 kb on - strand, within DZA65_RS14865at 3241.510 kb on - strand, within DZA65_RS14865at 3241.510 kb on - strand, within DZA65_RS14865at 3241.510 kb on - strand, within DZA65_RS14865at 3241.510 kb on - strand, within DZA65_RS14865at 3241.565 kb on + strand, within DZA65_RS14865at 3241.609 kb on + strand, within DZA65_RS14865at 3241.665 kb on + strandat 3241.665 kb on + strandat 3241.666 kb on - strandat 3241.676 kb on + strandat 3241.677 kb on - strandat 3241.755 kb on - strandat 3241.755 kb on - strandat 3241.835 kb on + strand, within DZA65_RS14870at 3241.835 kb on + strand, within DZA65_RS14870at 3241.836 kb on - strand, within DZA65_RS14870at 3241.836 kb on - strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strandat 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strandat 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.911 kb on + strand, within DZA65_RS14870at 3241.911 kb on + strand, within DZA65_RS14870at 3241.912 kb on - strand, within DZA65_RS14870at 3241.912 kb on - strand, within DZA65_RS14870at 3242.216 kb on - strand, within DZA65_RS14870at 3242.225 kb on + strand, within DZA65_RS14870at 3242.225 kb on + strand, within DZA65_RS14870at 3242.225 kb on + strand, within DZA65_RS14870at 3242.226 kb on - strand, within DZA65_RS14870at 3242.226 kb on - strand, within DZA65_RS14870at 3242.345 kb on + strand, within DZA65_RS14870at 3242.346 kb on - strand, within DZA65_RS14870at 3242.346 kb on - strand, within DZA65_RS14870at 3242.346 kb on - strand, within DZA65_RS14870

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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3,239,318 + -0.1
3,239,319 - -1.3
3,239,319 - +0.4
3,239,319 - -1.5
3,239,319 - -1.4
3,239,522 + DZA65_RS14855 0.27 -0.6
3,239,522 + DZA65_RS14855 0.27 -1.1
3,239,523 - DZA65_RS14855 0.27 +0.0
3,239,523 - DZA65_RS14855 0.27 -0.4
3,239,873 + DZA65_RS14855 0.61 +0.4
3,239,874 - DZA65_RS14855 0.61 +1.6
3,239,874 - DZA65_RS14855 0.61 +0.6
3,239,976 + DZA65_RS14855 0.71 -1.3
3,239,976 + DZA65_RS14855 0.71 -0.2
3,239,977 - DZA65_RS14855 0.71 -0.1
3,239,977 - DZA65_RS14855 0.71 -0.3
3,240,075 + DZA65_RS14855 0.81 -1.0
3,240,075 + DZA65_RS14855 0.81 -0.8
3,240,075 + DZA65_RS14855 0.81 -0.8
3,240,075 + DZA65_RS14855 0.81 +0.6
3,240,075 + DZA65_RS14855 0.81 +0.1
3,240,075 + DZA65_RS14855 0.81 -1.2
3,240,075 + DZA65_RS14855 0.81 +0.4
3,240,075 + DZA65_RS14855 0.81 -1.0
3,240,075 + DZA65_RS14855 0.81 -0.0
3,240,076 - DZA65_RS14855 0.81 -1.3
3,240,076 - DZA65_RS14855 0.81 -1.0
3,240,076 - DZA65_RS14855 0.81 +0.9
3,240,076 - DZA65_RS14855 0.81 -1.5
3,240,076 - +0.5
3,240,076 - DZA65_RS14855 0.81 -0.2
3,240,197 + +0.1
3,240,197 + +0.1
3,240,197 + -0.4
3,240,197 + +0.2
3,240,198 - -1.1
3,240,198 - -0.5
3,240,257 + -0.7
3,240,257 + -0.8
3,240,258 - +0.5
3,240,258 - -0.7
3,240,258 - -0.2
3,240,297 + +0.9
3,240,298 - -2.0
3,240,298 - +0.7
3,240,298 - -2.1
3,240,298 - +0.0
3,240,300 + +0.3
3,240,300 + -0.3
3,240,300 + +0.0
3,240,301 - -0.3
3,240,301 - +0.4
3,240,301 - +0.5
3,240,359 - -0.5
3,240,395 - DZA65_RS14860 0.11 -1.8
3,240,395 - DZA65_RS14860 0.11 -1.1
3,240,410 + DZA65_RS14860 0.12 -0.3
3,240,463 + DZA65_RS14860 0.17 -0.6
3,240,492 + DZA65_RS14860 0.20 -1.7
3,240,492 + DZA65_RS14860 0.20 -2.0
3,240,619 + DZA65_RS14860 0.31 -0.3
3,240,620 - DZA65_RS14860 0.31 +0.6
3,241,021 - DZA65_RS14860 0.67 -2.0
3,241,090 + DZA65_RS14860 0.73 -0.2
3,241,090 + DZA65_RS14860 0.73 -0.1
3,241,091 - DZA65_RS14860 0.73 -2.3
3,241,105 + DZA65_RS14860 0.75 -0.5
3,241,309 + -1.0
3,241,310 - -0.4
3,241,310 - +0.4
3,241,380 + -1.6
3,241,380 + -1.1
3,241,380 + +0.1
3,241,380 + -0.5
3,241,380 + -0.8
3,241,380 + +1.1
3,241,380 + -0.1
3,241,381 - +1.5
3,241,381 - +0.1
3,241,381 - +2.0
3,241,381 - -0.7
3,241,381 - -2.0
3,241,381 - +0.6
3,241,387 + +0.2
3,241,387 + -0.5
3,241,387 + +0.1
3,241,387 + -0.4
3,241,387 + -0.6
3,241,387 + -2.0
3,241,387 + +0.5
3,241,388 - +0.5
3,241,388 - -0.9
3,241,388 - -0.7
3,241,388 - +0.8
3,241,388 - -0.0
3,241,388 - -1.5
3,241,388 - +0.8
3,241,388 - -0.4
3,241,388 - +0.0
3,241,388 - -0.1
3,241,388 - -1.5
3,241,509 + DZA65_RS14865 0.47 +0.3
3,241,509 + DZA65_RS14865 0.47 +0.3
3,241,509 + DZA65_RS14865 0.47 +0.2
3,241,509 + DZA65_RS14865 0.47 -1.0
3,241,509 + DZA65_RS14865 0.47 -0.5
3,241,509 + DZA65_RS14865 0.47 +1.0
3,241,509 + DZA65_RS14865 0.47 -0.4
3,241,509 + DZA65_RS14865 0.47 +0.2
3,241,509 + DZA65_RS14865 0.47 -2.3
3,241,509 + DZA65_RS14865 0.47 -2.2
3,241,509 + DZA65_RS14865 0.47 +0.8
3,241,509 + DZA65_RS14865 0.47 -0.1
3,241,509 + DZA65_RS14865 0.47 +0.1
3,241,509 + DZA65_RS14865 0.47 -0.9
3,241,509 + DZA65_RS14865 0.47 -0.6
3,241,510 - DZA65_RS14865 0.47 -0.7
3,241,510 - DZA65_RS14865 0.47 +0.1
3,241,510 - DZA65_RS14865 0.47 +0.8
3,241,510 - DZA65_RS14865 0.47 -0.3
3,241,510 - DZA65_RS14865 0.47 -0.2
3,241,510 - DZA65_RS14865 0.47 -0.1
3,241,510 - DZA65_RS14865 0.47 -0.6
3,241,565 + DZA65_RS14865 0.66 -1.2
3,241,609 + DZA65_RS14865 0.82 -0.3
3,241,665 + -0.5
3,241,665 + +0.8
3,241,666 - -0.8
3,241,676 + +0.3
3,241,677 - +0.6
3,241,755 - -0.9
3,241,755 - -0.9
3,241,835 + DZA65_RS14870 0.15 +0.5
3,241,835 + DZA65_RS14870 0.15 +0.7
3,241,836 - DZA65_RS14870 0.15 +0.5
3,241,836 - DZA65_RS14870 0.15 +1.6
3,241,903 + DZA65_RS14870 0.21 -0.2
3,241,903 + DZA65_RS14870 0.21 -0.4
3,241,903 + DZA65_RS14870 0.21 -0.3
3,241,903 + DZA65_RS14870 0.21 -1.3
3,241,903 + DZA65_RS14870 0.21 -0.5
3,241,903 + DZA65_RS14870 0.21 +0.5
3,241,903 + DZA65_RS14870 0.21 -0.6
3,241,903 + DZA65_RS14870 0.21 +0.1
3,241,903 + DZA65_RS14870 0.21 -1.3
3,241,903 + DZA65_RS14870 0.21 +0.6
3,241,903 + DZA65_RS14870 0.21 -0.8
3,241,903 + DZA65_RS14870 0.21 -0.9
3,241,903 + DZA65_RS14870 0.21 -1.6
3,241,903 + DZA65_RS14870 0.21 -0.1
3,241,903 + DZA65_RS14870 0.21 -0.6
3,241,903 + DZA65_RS14870 0.21 -0.3
3,241,903 + DZA65_RS14870 0.21 -0.0
3,241,903 + DZA65_RS14870 0.21 -1.4
3,241,903 + DZA65_RS14870 0.21 -1.5
3,241,903 + DZA65_RS14870 0.21 -0.4
3,241,903 + DZA65_RS14870 0.21 -1.0
3,241,904 - DZA65_RS14870 0.21 -0.3
3,241,904 - DZA65_RS14870 0.21 -0.7
3,241,904 - DZA65_RS14870 0.21 -2.9
3,241,904 - -0.2
3,241,904 - DZA65_RS14870 0.21 +0.4
3,241,904 - DZA65_RS14870 0.21 -1.3
3,241,904 - DZA65_RS14870 0.21 -1.0
3,241,904 - -1.2
3,241,904 - DZA65_RS14870 0.21 -0.9
3,241,904 - DZA65_RS14870 0.21 -0.6
3,241,904 - DZA65_RS14870 0.21 +0.1
3,241,904 - DZA65_RS14870 0.21 +1.1
3,241,904 - DZA65_RS14870 0.21 -0.2
3,241,904 - DZA65_RS14870 0.21 -0.9
3,241,904 - DZA65_RS14870 0.21 -0.2
3,241,904 - DZA65_RS14870 0.21 -0.5
3,241,904 - DZA65_RS14870 0.21 -0.6
3,241,904 - DZA65_RS14870 0.21 -0.3
3,241,904 - DZA65_RS14870 0.21 +0.1
3,241,904 - DZA65_RS14870 0.21 -0.9
3,241,911 + DZA65_RS14870 0.22 -2.0
3,241,911 + DZA65_RS14870 0.22 -0.8
3,241,912 - DZA65_RS14870 0.22 +0.8
3,241,912 - DZA65_RS14870 0.22 +0.0
3,242,216 - DZA65_RS14870 0.49 +0.1
3,242,225 + DZA65_RS14870 0.50 -0.4
3,242,225 + DZA65_RS14870 0.50 +0.1
3,242,225 + DZA65_RS14870 0.50 -0.1
3,242,226 - DZA65_RS14870 0.50 -1.2
3,242,226 - DZA65_RS14870 0.50 -0.0
3,242,345 + DZA65_RS14870 0.60 -0.1
3,242,346 - DZA65_RS14870 0.60 -0.7
3,242,346 - DZA65_RS14870 0.60 +0.1
3,242,346 - DZA65_RS14870 0.60 +0.5

Or see this region's nucleotide sequence