Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13560

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,911,269	+		DZA65_RS13555	0.59	-0.5
2,911,269	+		DZA65_RS13555	0.59	-1.9
2,911,270	-		DZA65_RS13555	0.59	-0.4
2,911,270	-		DZA65_RS13555	0.59	-0.6
2,911,287	+		DZA65_RS13555	0.60	-0.1
2,911,287	+		DZA65_RS13555	0.60	+0.7
2,911,287	+		DZA65_RS13555	0.60	-0.5
2,911,287	+		DZA65_RS13555	0.60	+0.4
2,911,287	+		DZA65_RS13555	0.60	+0.3
2,911,287	+		DZA65_RS13555	0.60	+0.8
2,911,287	+		DZA65_RS13555	0.60	-0.1
2,911,287	+		DZA65_RS13555	0.60	-0.8
2,911,287	+		DZA65_RS13555	0.60	-0.7
2,911,288	-		DZA65_RS13555	0.60	-0.6
2,911,288	-		DZA65_RS13555	0.60	+0.2
2,911,288	-		DZA65_RS13555	0.60	-0.6
2,911,288	-		DZA65_RS13555	0.60	-0.2
2,911,288	-		DZA65_RS13555	0.60	-1.4
2,911,309	+				+2.3
2,911,309	+		DZA65_RS13555	0.61	-0.0
2,911,309	+		DZA65_RS13555	0.61	-1.1
2,911,309	+				+0.3
2,911,310	-		DZA65_RS13555	0.61	+0.3
2,911,311	+		DZA65_RS13555	0.61	-1.7
2,911,312	-		DZA65_RS13555	0.61	-2.2
2,911,410	+		DZA65_RS13555	0.65	-1.0
2,911,410	+		DZA65_RS13555	0.65	-1.2
2,911,410	+		DZA65_RS13555	0.65	-0.8
2,911,410	+		DZA65_RS13555	0.65	+0.6
2,911,410	+		DZA65_RS13555	0.65	+0.8
2,911,410	+		DZA65_RS13555	0.65	-0.0
2,911,411	-		DZA65_RS13555	0.65	+0.2
2,911,411	-		DZA65_RS13555	0.65	-1.0
2,911,411	-		DZA65_RS13555	0.65	-1.0
2,911,524	+		DZA65_RS13555	0.70	-1.2
2,911,524	+		DZA65_RS13555	0.70	+0.1
2,911,525	-		DZA65_RS13555	0.70	-0.2
2,911,528	-		DZA65_RS13555	0.70	-0.1
2,911,575	+		DZA65_RS13555	0.72	+0.1
2,911,575	+		DZA65_RS13555	0.72	-1.0
2,911,575	+		DZA65_RS13555	0.72	+0.1
2,911,575	+		DZA65_RS13555	0.72	-0.2
2,911,575	+		DZA65_RS13555	0.72	-0.1
2,911,575	+		DZA65_RS13555	0.72	+0.3
2,911,576	-		DZA65_RS13555	0.72	+0.2
2,911,576	-		DZA65_RS13555	0.72	-0.6
2,911,576	-		DZA65_RS13555	0.72	-0.1
2,911,576	-		DZA65_RS13555	0.72	-0.2
2,911,576	-		DZA65_RS13555	0.72	+0.5
2,911,576	-		DZA65_RS13555	0.72	-0.2
2,911,576	-		DZA65_RS13555	0.72	+0.5
2,911,576	-		DZA65_RS13555	0.72	+0.0
2,911,576	-		DZA65_RS13555	0.72	-0.8
2,911,576	-		DZA65_RS13555	0.72	-0.4
2,911,579	+		DZA65_RS13555	0.72	+1.5
2,911,579	+		DZA65_RS13555	0.72	-1.2
2,911,579	+		DZA65_RS13555	0.72	+0.0
2,911,580	-		DZA65_RS13555	0.72	+0.9
2,911,580	-		DZA65_RS13555	0.72	-0.7
2,911,580	-		DZA65_RS13555	0.72	-0.2
2,911,580	-		DZA65_RS13555	0.72	-0.2
2,911,626	+		DZA65_RS13555	0.74	-0.3
2,911,638	+		DZA65_RS13555	0.75	+0.3
2,911,639	-		DZA65_RS13555	0.75	-0.5
2,911,639	-		DZA65_RS13555	0.75	+1.2
2,911,683	+		DZA65_RS13555	0.77	-0.1
2,911,683	+				-0.8
2,911,696	+		DZA65_RS13555	0.77	-0.2
2,911,709	-		DZA65_RS13555	0.78	-1.0
2,911,709	-		DZA65_RS13555	0.78	+0.1
2,911,710	+		DZA65_RS13555	0.78	-0.0
2,911,710	+		DZA65_RS13555	0.78	-2.0
2,911,710	+		DZA65_RS13555	0.78	-0.7
2,911,710	+		DZA65_RS13555	0.78	-1.0
2,911,711	-		DZA65_RS13555	0.78	-0.5
2,911,711	-		DZA65_RS13555	0.78	+0.4
2,911,711	-		DZA65_RS13555	0.78	+0.4
2,911,760	+		DZA65_RS13555	0.80	-1.4
2,911,761	-		DZA65_RS13555	0.80	+0.3
2,911,819	-		DZA65_RS13555	0.82	+0.8
2,911,819	-		DZA65_RS13555	0.82	+0.2
2,911,843	+		DZA65_RS13555	0.83	-0.2
2,911,843	+		DZA65_RS13555	0.83	-0.2
2,911,843	+		DZA65_RS13555	0.83	-0.2
2,911,844	-		DZA65_RS13555	0.83	-0.9
2,911,844	-		DZA65_RS13555	0.83	+0.5
2,911,844	-		DZA65_RS13555	0.83	+0.0
2,911,844	-		DZA65_RS13555	0.83	+0.0
2,911,855	-		DZA65_RS13555	0.84	-0.8
2,911,855	-		DZA65_RS13555	0.84	-0.1
2,911,855	-		DZA65_RS13555	0.84	-0.8
2,911,911	+		DZA65_RS13555	0.86	-0.6
2,911,911	+		DZA65_RS13555	0.86	+0.5
2,911,911	+		DZA65_RS13555	0.86	-0.0
2,911,911	+		DZA65_RS13555	0.86	-0.4
2,911,911	+		DZA65_RS13555	0.86	-1.8
2,911,912	-		DZA65_RS13555	0.86	-0.6
2,911,999	+				-1.3
2,911,999	+				-1.7
2,912,000	-				-0.2
2,912,000	-				-0.7
2,912,000	-				-0.1
2,912,000	-				+0.3
2,912,148	+				-0.4
2,912,149	-				+1.3
2,912,149	-				+0.0
2,912,214	-				-0.4
2,912,236	+				+0.0
2,912,236	+				-0.2
2,912,237	-				-0.1
2,912,250	+				-0.2
2,912,322	+				+0.8
2,912,322	+				-0.2
2,912,323	-				+0.1
2,912,551	+		DZA65_RS13560	0.22	+1.4
2,912,552	-		DZA65_RS13560	0.22	-0.5
2,912,659	+		DZA65_RS13560	0.30	-1.9
2,912,770	+		DZA65_RS13560	0.39	-0.8
2,912,770	+		DZA65_RS13560	0.39	+0.4
2,912,771	-		DZA65_RS13560	0.39	+0.3
2,912,968	+		DZA65_RS13560	0.54	+0.5
2,912,968	+		DZA65_RS13560	0.54	-0.7
2,912,969	-		DZA65_RS13560	0.54	-0.6
2,912,969	-		DZA65_RS13560	0.54	+0.6
2,912,969	-		DZA65_RS13560	0.54	-0.2
2,912,969	-		DZA65_RS13560	0.54	-0.8
2,912,971	+		DZA65_RS13560	0.54	-1.8
2,912,971	+		DZA65_RS13560	0.54	+0.6
2,912,971	+		DZA65_RS13560	0.54	+0.4
2,913,065	+		DZA65_RS13560	0.62	-0.5
2,913,066	-		DZA65_RS13560	0.62	-0.9
2,913,066	-		DZA65_RS13560	0.62	+0.8
2,913,346	-		DZA65_RS13560	0.83	-1.0
2,913,346	-		DZA65_RS13560	0.83	+0.4
2,913,350	+		DZA65_RS13560	0.84	+1.0
2,913,350	+		DZA65_RS13560	0.84	+1.1
2,913,350	+		DZA65_RS13560	0.84	+0.1
2,913,350	+		DZA65_RS13560	0.84	-0.2
2,913,352	+		DZA65_RS13560	0.84	+0.7
2,913,353	-		DZA65_RS13560	0.84	+0.4
2,913,353	-		DZA65_RS13560	0.84	+0.8
2,913,385	+		DZA65_RS13560	0.86	+0.4
2,913,385	+		DZA65_RS13560	0.86	+0.2
2,913,385	+		DZA65_RS13560	0.86	+0.1
2,913,386	-		DZA65_RS13560	0.86	-0.5
2,913,386	-				-1.2
2,913,386	-		DZA65_RS13560	0.86	+0.2
2,913,398	+		DZA65_RS13560	0.87	-0.8
2,913,401	+		DZA65_RS13560	0.87	-0.2
2,913,402	-		DZA65_RS13560	0.88	+0.2
2,913,402	-		DZA65_RS13560	0.88	+0.8
2,913,402	-		DZA65_RS13560	0.88	+0.2
2,913,434	+				-0.6
2,913,455	+				+1.0
2,913,455	+				+0.2
2,913,455	+				+0.3
2,913,455	+				-0.3
2,913,455	+				+0.5
2,913,455	+				-1.0
2,913,456	-				-0.2
2,913,456	-				+0.2
2,913,457	+				-0.1
2,913,457	+				-0.4
2,913,457	+				-0.5
2,913,457	+				-0.2
2,913,457	+				-0.7
2,913,457	+				-0.0
2,913,457	+				-0.0
2,913,458	-				+0.2
2,913,458	-				-0.2
2,913,458	-				+0.4
2,913,458	-				-0.7
2,913,458	-				-0.2
2,913,458	-				+0.3
2,913,458	-				+1.0
2,913,462	-				+1.8
2,913,484	-				-0.1
2,913,549	-				+1.4
2,913,626	+				+0.8
2,913,627	-				+0.1
2,913,648	-				-1.4
2,913,648	-				-0.4
2,913,668	+				+0.1
2,913,668	+				+0.2
2,913,669	-				-0.0
2,913,669	-				-0.6
2,913,738	-				-0.6
2,913,780	-				-0.0
2,913,780	-				+0.8
2,913,780	-				+0.7
2,913,796	+				-0.6
2,913,796	+				-1.6
2,913,796	+				+0.3
2,913,797	-				+0.8
2,913,797	-				-0.6
2,913,797	-				+1.8
2,913,797	-				-0.4
2,913,797	-				-0.1
2,913,797	-				-0.4
2,913,956	+				-0.0
2,914,002	+		DZA65_RS13565	0.13	-0.6
2,914,003	-		DZA65_RS13565	0.13	-0.6
2,914,047	-		DZA65_RS13565	0.17	-0.8
2,914,101	+		DZA65_RS13565	0.22	-0.9
2,914,102	-		DZA65_RS13565	0.22	-1.0
2,914,102	-		DZA65_RS13565	0.22	-0.3
2,914,102	-		DZA65_RS13565	0.22	-0.7
2,914,106	+		DZA65_RS13565	0.22	-0.2
2,914,106	+		DZA65_RS13565	0.22	+1.1
2,914,106	+		DZA65_RS13565	0.22	-1.5
2,914,106	+		DZA65_RS13565	0.22	-0.8
2,914,106	+		DZA65_RS13565	0.22	-1.2
2,914,106	+		DZA65_RS13565	0.22	-0.4
2,914,106	+		DZA65_RS13565	0.22	-1.7
2,914,106	+		DZA65_RS13565	0.22	+0.8
2,914,106	+		DZA65_RS13565	0.22	-0.4
2,914,107	-		DZA65_RS13565	0.22	+0.9
2,914,107	-		DZA65_RS13565	0.22	-0.5
2,914,107	-		DZA65_RS13565	0.22	+0.5
2,914,112	-		DZA65_RS13565	0.23	-0.2
2,914,112	-		DZA65_RS13565	0.23	-0.8
2,914,112	-		DZA65_RS13565	0.23	-0.2
2,914,112	-		DZA65_RS13565	0.23	-0.3
2,914,112	-		DZA65_RS13565	0.23	-0.8
2,914,112	-		DZA65_RS13565	0.23	-2.7
2,914,121	+		DZA65_RS13565	0.24	+0.4
2,914,121	+		DZA65_RS13565	0.24	+1.3
2,914,122	-		DZA65_RS13565	0.24	+0.2
2,914,122	-		DZA65_RS13565	0.24	-0.1
2,914,162	-		DZA65_RS13565	0.27	-1.8
2,914,263	+		DZA65_RS13565	0.37	+0.1
2,914,263	+		DZA65_RS13565	0.37	-0.5
2,914,263	+		DZA65_RS13565	0.37	+0.3
2,914,263	+		DZA65_RS13565	0.37	+0.3
2,914,263	+		DZA65_RS13565	0.37	-0.6
2,914,263	+		DZA65_RS13565	0.37	-2.2
2,914,263	+		DZA65_RS13565	0.37	-0.1
2,914,263	+		DZA65_RS13565	0.37	+0.2
2,914,263	+		DZA65_RS13565	0.37	-0.2
2,914,263	+		DZA65_RS13565	0.37	+0.9
2,914,263	+		DZA65_RS13565	0.37	-1.2
2,914,263	+		DZA65_RS13565	0.37	-1.0
2,914,263	+		DZA65_RS13565	0.37	-1.3
2,914,263	+		DZA65_RS13565	0.37	-1.9
2,914,263	+		DZA65_RS13565	0.37	-0.1
2,914,263	+		DZA65_RS13565	0.37	+0.8
2,914,263	+		DZA65_RS13565	0.37	-1.0
2,914,263	+		DZA65_RS13565	0.37	+0.8
2,914,264	-		DZA65_RS13565	0.37	-2.9
2,914,264	-		DZA65_RS13565	0.37	-0.4
2,914,264	-		DZA65_RS13565	0.37	-2.0
2,914,264	-		DZA65_RS13565	0.37	-1.7
2,914,265	+		DZA65_RS13565	0.37	-0.5
2,914,265	+		DZA65_RS13565	0.37	-0.5
2,914,265	+		DZA65_RS13565	0.37	-0.0
2,914,265	+		DZA65_RS13565	0.37	+0.3
2,914,266	-		DZA65_RS13565	0.37	-2.2
2,914,266	-		DZA65_RS13565	0.37	-1.0
2,914,266	-		DZA65_RS13565	0.37	+1.0
2,914,266	-		DZA65_RS13565	0.37	+0.3
2,914,266	-		DZA65_RS13565	0.37	-0.5
2,914,266	-		DZA65_RS13565	0.37	+0.9
2,914,266	-		DZA65_RS13565	0.37	-0.0
2,914,386	+		DZA65_RS13565	0.48	-0.2
2,914,386	+		DZA65_RS13565	0.48	-0.2
2,914,387	-		DZA65_RS13565	0.48	+1.0
2,914,387	-		DZA65_RS13565	0.48	-0.1
2,914,387	-		DZA65_RS13565	0.48	+0.3
2,914,387	-		DZA65_RS13565	0.48	+0.5
2,914,387	-		DZA65_RS13565	0.48	+0.3
2,914,387	-		DZA65_RS13565	0.48	-0.2
2,914,479	+		DZA65_RS13565	0.57	-0.4
2,914,480	-		DZA65_RS13565	0.57	-0.4
2,914,480	-		DZA65_RS13565	0.57	-0.2
2,914,503	-		DZA65_RS13565	0.59	-0.2
2,914,520	-		DZA65_RS13565	0.61	-0.1
2,914,520	-		DZA65_RS13565	0.61	+1.8
2,914,520	-		DZA65_RS13565	0.61	-1.2