Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12890

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,761,411	+				-0.2
2,761,412	-				+0.1
2,761,412	-				-0.8
2,761,429	-				+0.5
2,761,459	-				+0.2
2,761,467	+				+0.0
2,761,468	-				+1.5
2,761,468	-				-2.0
2,761,468	-				+0.1
2,761,468	-				-0.3
2,761,510	+				-1.1
2,761,552	+				+0.4
2,761,560	+				-0.4
2,761,561	-				+0.3
2,761,616	-		DZA65_RS12885	0.12	-0.7
2,761,616	-		DZA65_RS12885	0.12	+0.5
2,761,616	-		DZA65_RS12885	0.12	+0.2
2,761,616	-		DZA65_RS12885	0.12	-1.4
2,761,672	-		DZA65_RS12885	0.18	-0.4
2,761,711	+		DZA65_RS12885	0.22	+0.4
2,761,711	+		DZA65_RS12885	0.22	-1.5
2,761,711	+		DZA65_RS12885	0.22	-0.8
2,761,711	+		DZA65_RS12885	0.22	-1.0
2,761,711	+		DZA65_RS12885	0.22	+0.5
2,761,712	-		DZA65_RS12885	0.22	-0.1
2,761,718	+		DZA65_RS12885	0.23	-0.2
2,761,718	+		DZA65_RS12885	0.23	-0.2
2,761,719	-		DZA65_RS12885	0.23	-0.2
2,761,719	-		DZA65_RS12885	0.23	-0.7
2,761,719	-		DZA65_RS12885	0.23	+0.7
2,761,822	+		DZA65_RS12885	0.35	-0.3
2,761,823	-		DZA65_RS12885	0.35	+0.3
2,761,894	+		DZA65_RS12885	0.43	+0.7
2,761,895	-		DZA65_RS12885	0.43	-0.2
2,761,895	-		DZA65_RS12885	0.43	-0.9
2,761,895	-		DZA65_RS12885	0.43	+2.5
2,761,895	-		DZA65_RS12885	0.43	+0.0
2,761,950	+		DZA65_RS12885	0.49	+0.4
2,761,950	+		DZA65_RS12885	0.49	-0.3
2,761,951	-		DZA65_RS12885	0.49	+0.1
2,761,951	-		DZA65_RS12885	0.49	-0.9
2,762,026	+		DZA65_RS12885	0.57	-0.3
2,762,026	+		DZA65_RS12885	0.57	-0.5
2,762,027	-		DZA65_RS12885	0.57	-0.2
2,762,027	-				+1.7
2,762,242	+		DZA65_RS12885	0.81	-0.5
2,762,242	+		DZA65_RS12885	0.81	+1.4
2,762,242	+		DZA65_RS12885	0.81	-0.3
2,762,270	-		DZA65_RS12885	0.84	-0.3
2,762,270	-		DZA65_RS12885	0.84	-0.7
2,762,333	+				-2.1
2,762,333	+				-0.5
2,762,333	+				-0.6
2,762,333	+				-0.2
2,762,333	+				+0.3
2,762,333	+				+0.2
2,762,333	+				+0.0
2,762,333	+				-0.0
2,762,333	+				-0.3
2,762,334	-				-0.3
2,762,334	-				-0.7
2,762,334	-				-0.6
2,762,334	-				-1.0
2,762,334	-				-0.8
2,762,409	-				+0.5
2,762,468	-				-0.1
2,762,558	-				+0.7
2,762,558	-				-0.8
2,762,569	-				-0.2
2,762,874	+		DZA65_RS12890	0.20	-1.2
2,762,900	+		DZA65_RS12890	0.21	-0.1
2,762,900	+		DZA65_RS12890	0.21	+0.2
2,762,901	-		DZA65_RS12890	0.21	+0.4
2,762,905	-		DZA65_RS12890	0.21	-0.2
2,762,905	-		DZA65_RS12890	0.21	-0.6
2,762,905	-		DZA65_RS12890	0.21	-0.9
2,762,961	-		DZA65_RS12890	0.24	-0.0
2,763,150	+		DZA65_RS12890	0.32	-0.4
2,763,601	-		DZA65_RS12890	0.51	+0.6
2,763,752	+		DZA65_RS12890	0.58	-0.6
2,763,752	+		DZA65_RS12890	0.58	+0.3
2,763,752	+		DZA65_RS12890	0.58	-0.4
2,763,752	+		DZA65_RS12890	0.58	+1.2
2,763,753	-		DZA65_RS12890	0.58	-2.1
2,763,756	+		DZA65_RS12890	0.58	-0.6
2,763,756	+		DZA65_RS12890	0.58	+0.3
2,763,757	-		DZA65_RS12890	0.58	+2.0
2,763,757	-		DZA65_RS12890	0.58	+0.3
2,763,757	-		DZA65_RS12890	0.58	-0.3
2,763,757	-		DZA65_RS12890	0.58	+0.5
2,763,757	-		DZA65_RS12890	0.58	+0.8
2,763,757	-		DZA65_RS12890	0.58	+0.2
2,763,762	+		DZA65_RS12890	0.58	-0.1
2,763,763	-		DZA65_RS12890	0.58	-0.6
2,763,860	+		DZA65_RS12890	0.62	-0.3
2,763,860	+		DZA65_RS12890	0.62	-0.4
2,763,860	+		DZA65_RS12890	0.62	-0.3
2,763,860	+		DZA65_RS12890	0.62	+1.2
2,763,860	+		DZA65_RS12890	0.62	+0.5
2,763,861	-		DZA65_RS12890	0.62	+1.9
2,763,883	+		DZA65_RS12890	0.63	+0.2
2,763,884	-		DZA65_RS12890	0.63	-0.3
2,763,884	-		DZA65_RS12890	0.63	+0.7
2,763,884	-		DZA65_RS12890	0.63	-0.6
2,763,884	-		DZA65_RS12890	0.63	-0.5
2,763,943	-		DZA65_RS12890	0.66	+0.4
2,764,180	-		DZA65_RS12890	0.76	+0.2
2,764,196	+		DZA65_RS12890	0.77	+0.5
2,764,196	+		DZA65_RS12890	0.77	-0.1
2,764,197	-		DZA65_RS12890	0.77	+0.1
2,764,319	+		DZA65_RS12890	0.82	-1.2
2,764,320	-		DZA65_RS12890	0.82	-1.9
2,764,323	+		DZA65_RS12890	0.82	-1.0
2,764,324	-		DZA65_RS12890	0.82	-1.0
2,764,324	-		DZA65_RS12890	0.82	+0.7
2,764,324	-		DZA65_RS12890	0.82	-1.0
2,764,324	-		DZA65_RS12890	0.82	-0.2
2,764,324	-		DZA65_RS12890	0.82	+0.9
2,764,324	-		DZA65_RS12890	0.82	+0.4
2,764,324	-		DZA65_RS12890	0.82	+0.8
2,764,324	-		DZA65_RS12890	0.82	-0.0
2,764,594	-				+1.0
2,764,594	-				-0.1
2,764,760	-				-0.3
2,764,760	-				-0.3
2,764,783	+				-0.5
2,764,818	+				+0.0
2,764,818	+				+3.3
2,764,819	-				+0.6
2,764,856	+				-0.2
2,764,856	+				-0.5
2,764,856	+				+0.0
2,764,856	+				+0.7
2,764,856	+				+1.0
2,764,856	+				+1.2
2,764,856	+				-0.7
2,764,857	-				+2.0
2,764,857	-				-0.1
2,764,857	-				+0.0
2,764,857	-				-0.1
2,764,857	-				+0.4
2,765,138	+		DZA65_RS12895	0.51	+1.4
2,765,155	+		DZA65_RS12895	0.54	-0.1
2,765,155	+		DZA65_RS12895	0.54	-1.0
2,765,340	-		DZA65_RS12895	0.88	+2.3
2,765,368	+				-0.3
2,765,396	+				+0.1
2,765,396	+				-1.2
2,765,397	-				+0.3
2,765,397	-				-0.1
2,765,397	-				-1.8
2,765,457	+				-0.9
2,765,457	+				+0.7
2,765,457	+				+0.3
2,765,457	+				-0.0
2,765,457	+				+0.3
2,765,457	+				-0.2
2,765,457	+				+1.1
2,765,457	+				-0.2
2,765,457	+				-0.0
2,765,457	+				-0.4
2,765,458	-				-0.5
2,765,458	-				-1.5
2,765,458	-				+0.4
2,765,458	-				+0.5
2,765,458	-				-1.0
2,765,463	+				-0.2
2,765,463	+				+0.2
2,765,463	+				-0.7
2,765,464	-				-0.4
2,765,464	-				-0.6
2,765,508	+				-0.3
2,765,508	+				+1.7
2,765,509	-				+1.2
2,765,509	-				-0.0
2,765,509	-				-0.9
2,765,509	-				-0.2
2,765,509	-				-0.3
2,765,509	-				-0.9
2,765,509	-				-0.4
2,765,513	+				-0.2
2,765,513	+				-0.7
2,765,514	-				-1.2
2,765,514	-				+0.1
2,765,546	+				-0.4
2,765,546	+				-0.1
2,765,547	-				+0.0
2,765,547	-				+1.7
2,765,600	+				+0.8
2,765,600	+				-2.6
2,765,601	-				-0.6
2,765,623	+				-0.9
2,765,624	-				+0.9
2,765,655	+				+0.7
2,765,656	-				-0.3
2,765,665	+				+0.1
2,765,675	+		DZA65_RS22925	0.10	+0.2
2,765,675	+		DZA65_RS22925	0.10	+0.2
2,765,676	-		DZA65_RS22925	0.11	+0.2
2,765,685	-		DZA65_RS22925	0.13	-1.2
2,765,685	-		DZA65_RS22925	0.13	-0.8
2,765,702	+		DZA65_RS22925	0.17	-0.1
2,765,738	-		DZA65_RS22925	0.25	-0.5