Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09545

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,006,081	+		DZA65_RS09540	0.10	+0.3
2,006,082	-		DZA65_RS09540	0.10	+0.1
2,006,082	-		DZA65_RS09540	0.10	+0.1
2,006,082	-		DZA65_RS09540	0.10	-2.2
2,006,082	-		DZA65_RS09540	0.10	-0.2
2,006,085	+		DZA65_RS09540	0.11	-1.0
2,006,085	+		DZA65_RS09540	0.11	-0.3
2,006,086	-		DZA65_RS09540	0.11	+1.4
2,006,086	-		DZA65_RS09540	0.11	+0.7
2,006,153	+		DZA65_RS09540	0.23	-1.3
2,006,153	+		DZA65_RS09540	0.23	+0.7
2,006,153	+		DZA65_RS09540	0.23	-1.5
2,006,154	-		DZA65_RS09540	0.23	+0.2
2,006,154	-		DZA65_RS09540	0.23	+1.2
2,006,154	-		DZA65_RS09540	0.23	+0.7
2,006,154	-		DZA65_RS09540	0.23	+0.7
2,006,154	-		DZA65_RS09540	0.23	+0.7
2,006,154	-		DZA65_RS09540	0.23	+0.7
2,006,217	+		DZA65_RS09540	0.34	-0.3
2,006,256	-		DZA65_RS09540	0.40	+0.1
2,006,256	-		DZA65_RS09540	0.40	+0.8
2,006,256	-		DZA65_RS09540	0.40	+0.3
2,006,256	-		DZA65_RS09540	0.40	+0.2
2,006,256	-		DZA65_RS09540	0.40	-0.1
2,006,401	-		DZA65_RS09540	0.66	-0.4
2,006,449	+		DZA65_RS09540	0.74	+0.7
2,006,449	+		DZA65_RS09540	0.74	-0.5
2,006,449	+		DZA65_RS09540	0.74	+0.5
2,006,449	+		DZA65_RS09540	0.74	+0.1
2,006,450	-		DZA65_RS09540	0.74	-2.6
2,006,450	-		DZA65_RS09540	0.74	-0.2
2,006,450	-		DZA65_RS09540	0.74	-1.2
2,006,482	-		DZA65_RS09540	0.80	+1.3
2,006,494	-		DZA65_RS09540	0.82	+0.4
2,006,508	+		DZA65_RS09540	0.84	-0.9
2,006,518	-		DZA65_RS09540	0.86	+0.5
2,006,568	+				+0.1
2,006,568	+				-0.8
2,006,568	+				-0.7
2,006,568	+				-0.4
2,006,568	+				-0.9
2,006,568	+				-1.9
2,006,569	-				+0.9
2,006,569	-				+0.1
2,006,569	-				+0.2
2,006,569	-				+0.0
2,006,569	-				-1.5
2,006,569	-				+0.0
2,006,569	-				-0.1
2,006,569	-				+0.4
2,006,569	-				+0.2
2,006,570	+				+0.6
2,006,570	+				-0.3
2,006,570	+				+0.6
2,006,570	+				-0.4
2,006,570	+				-0.0
2,006,570	+				+1.0
2,006,571	-				+1.4
2,006,571	-				+0.3
2,006,571	-				-0.0
2,006,571	-				-0.4
2,006,571	-				+0.0
2,006,571	-				-1.6
2,006,605	+				-0.7
2,006,605	+				+0.2
2,006,605	+				-1.5
2,006,606	-				+0.2
2,006,606	-				+0.0
2,006,606	-				+0.4
2,006,652	-				-1.0
2,006,675	+				+0.5
2,006,675	+				+0.1
2,006,675	+				-0.0
2,006,676	-				+0.1
2,006,676	-				-0.3
2,006,682	-				+0.5
2,006,708	+				-1.1
2,006,716	+				-1.1
2,006,717	-				-0.6
2,006,717	-				-0.2
2,006,719	+				-0.5
2,006,719	+				+0.1
2,006,719	+				-0.3
2,006,720	-				-1.3
2,006,720	-				+0.3
2,006,767	+				-0.5
2,006,768	-				-0.5
2,006,768	-				+0.5
2,006,792	+				-0.1
2,006,792	+				+0.3
2,006,793	-				-0.3
2,006,814	+				+0.4
2,006,814	+				-0.5
2,006,815	-				-0.9
2,006,815	-				+0.8
2,006,815	-				+0.4
2,006,837	+				+1.3
2,006,837	+				-0.7
2,006,837	+				+0.1
2,006,837	+				+1.3
2,006,885	-				+1.4
2,006,918	+				+0.1
2,006,953	+				+0.6
2,006,953	+				-0.1
2,006,953	+				+0.1
2,006,953	+				-0.5
2,006,953	+				-0.3
2,006,954	-				+0.0
2,006,954	-				+0.7
2,006,963	+				+0.0
2,006,963	+				+1.0
2,006,963	+				+0.5
2,006,963	+				-1.6
2,006,963	+				+0.3
2,006,964	-				-0.1
2,006,964	-				-0.0
2,006,964	-				-0.0
2,006,964	-				-1.3
2,006,964	-				-1.7
2,006,966	+				-0.2
2,006,966	+				+0.4
2,006,967	-				+0.5
2,006,967	-				-1.2
2,006,967	-				+0.7
2,006,967	-				-1.1
2,006,967	-				-0.3
2,007,012	+				-1.4
2,007,012	+				+1.7
2,007,012	+				-1.5
2,007,013	-				+0.3
2,007,013	-				-0.6
2,007,014	+				-0.7
2,007,014	+				-1.0
2,007,014	+				-1.6
2,007,014	+				-0.5
2,007,014	+				+0.1
2,007,015	-				+0.1
2,007,015	-				+0.7
2,007,015	-				-0.6
2,007,028	+				-1.1
2,007,028	+				-1.6
2,007,029	-				-2.7
2,007,029	-				+0.1
2,007,029	-				+0.3
2,007,029	-				-0.7
2,007,033	+				-1.3
2,007,033	+				-1.0
2,007,034	-				-0.3
2,007,045	+				-0.4
2,007,045	+				-1.0
2,007,046	-				-0.8
2,007,046	-				-1.0
2,007,090	-				-0.7
2,007,211	-		DZA65_RS09545	0.19	-0.2
2,007,289	+		DZA65_RS09545	0.27	-2.1
2,007,290	-		DZA65_RS09545	0.27	-0.1
2,007,293	-		DZA65_RS09545	0.27	-1.3
2,007,499	+		DZA65_RS09545	0.48	-0.5
2,007,500	-		DZA65_RS09545	0.48	-0.7
2,007,539	+		DZA65_RS09545	0.52	-1.2
2,007,540	-		DZA65_RS09545	0.52	-2.5
2,007,540	-		DZA65_RS09545	0.52	-0.5
2,007,607	+		DZA65_RS09545	0.59	-0.4
2,007,608	-		DZA65_RS09545	0.59	+0.3
2,007,770	+		DZA65_RS09545	0.76	+0.1
2,007,770	+		DZA65_RS09545	0.76	-0.5
2,007,770	+		DZA65_RS09545	0.76	-1.6
2,007,770	+		DZA65_RS09545	0.76	-0.6
2,007,770	+		DZA65_RS09545	0.76	+1.1
2,007,770	+		DZA65_RS09545	0.76	-1.0
2,007,770	+		DZA65_RS09545	0.76	-0.4
2,007,770	+		DZA65_RS09545	0.76	-0.5
2,007,770	+		DZA65_RS09545	0.76	+1.3
2,007,770	+		DZA65_RS09545	0.76	-1.7
2,007,770	+		DZA65_RS09545	0.76	-0.6
2,007,771	-		DZA65_RS09545	0.76	-0.9
2,007,771	-		DZA65_RS09545	0.76	+0.3
2,007,771	-		DZA65_RS09545	0.76	-2.1
2,007,771	-		DZA65_RS09545	0.76	-0.3
2,007,771	-		DZA65_RS09545	0.76	-1.3
2,007,771	-				-1.6
2,007,771	-		DZA65_RS09545	0.76	-1.1
2,007,771	-		DZA65_RS09545	0.76	-0.2
2,007,771	-		DZA65_RS09545	0.76	-0.6
2,007,771	-		DZA65_RS09545	0.76	-0.1
2,007,771	-				-0.9
2,007,959	+				-1.4
2,007,960	-				+0.1
2,007,990	+				-0.7
2,007,991	-				+0.9
2,008,092	+				-0.8
2,008,092	+				-1.0
2,008,141	-		DZA65_RS09550	0.12	-0.6
2,008,295	+		DZA65_RS09550	0.39	-0.7
2,008,296	-		DZA65_RS09550	0.39	-0.2
2,008,296	-		DZA65_RS09550	0.39	-0.7
2,008,327	+		DZA65_RS09550	0.44	-2.7
2,008,328	-		DZA65_RS09550	0.45	-0.7
2,008,366	+		DZA65_RS09550	0.51	-0.8
2,008,366	+		DZA65_RS09550	0.51	+1.0
2,008,366	+		DZA65_RS09550	0.51	+0.1
2,008,366	+		DZA65_RS09550	0.51	-1.9
2,008,367	-		DZA65_RS09550	0.51	+0.7
2,008,367	-		DZA65_RS09550	0.51	-0.9
2,008,367	-		DZA65_RS09550	0.51	+0.0
2,008,368	+		DZA65_RS09550	0.51	-2.3
2,008,368	+		DZA65_RS09550	0.51	-0.1
2,008,368	+		DZA65_RS09550	0.51	-1.7
2,008,368	+		DZA65_RS09550	0.51	-0.2
2,008,369	-		DZA65_RS09550	0.52	+1.0
2,008,377	+		DZA65_RS09550	0.53	-1.3
2,008,377	+		DZA65_RS09550	0.53	+0.6
2,008,377	+		DZA65_RS09550	0.53	+0.1
2,008,377	+		DZA65_RS09550	0.53	-0.5
2,008,377	+		DZA65_RS09550	0.53	-3.5
2,008,378	-		DZA65_RS09550	0.53	+0.4
2,008,378	-		DZA65_RS09550	0.53	-2.7
2,008,378	-		DZA65_RS09550	0.53	-0.3
2,008,378	-		DZA65_RS09550	0.53	-1.0
2,008,393	+		DZA65_RS09550	0.56	-0.3
2,008,394	-		DZA65_RS09550	0.56	-0.1
2,008,401	+		DZA65_RS09550	0.57	-1.0
2,008,401	+		DZA65_RS09550	0.57	-0.6
2,008,401	+		DZA65_RS09550	0.57	-0.7
2,008,401	+		DZA65_RS09550	0.57	-0.3
2,008,401	+		DZA65_RS09550	0.57	-1.6
2,008,401	+		DZA65_RS09550	0.57	-0.7
2,008,401	+		DZA65_RS09550	0.57	+0.4
2,008,401	+		DZA65_RS09550	0.57	-2.5
2,008,401	+		DZA65_RS09550	0.57	-0.5
2,008,401	+		DZA65_RS09550	0.57	-1.5
2,008,401	+		DZA65_RS09550	0.57	-0.5
2,008,402	-		DZA65_RS09550	0.57	-0.1
2,008,402	-		DZA65_RS09550	0.57	-0.1
2,008,402	-		DZA65_RS09550	0.57	+0.3
2,008,402	-		DZA65_RS09550	0.57	+0.7
2,008,402	-		DZA65_RS09550	0.57	+0.5
2,008,402	-		DZA65_RS09550	0.57	-0.6
2,008,402	-		DZA65_RS09550	0.57	-0.5
2,008,417	+		DZA65_RS09550	0.60	-2.0
2,008,417	+		DZA65_RS09550	0.60	-0.7
2,008,418	-		DZA65_RS09550	0.60	+0.2
2,008,418	-		DZA65_RS09550	0.60	+0.6
2,008,419	+		DZA65_RS09550	0.60	+0.4
2,008,419	+		DZA65_RS09550	0.60	+0.2
2,008,419	+		DZA65_RS09550	0.60	-1.9
2,008,419	+		DZA65_RS09550	0.60	-0.3
2,008,419	+		DZA65_RS09550	0.60	+0.7
2,008,419	+		DZA65_RS09550	0.60	+0.2
2,008,420	-		DZA65_RS09550	0.61	-0.7
2,008,420	-		DZA65_RS09550	0.61	-0.0
2,008,420	-		DZA65_RS09550	0.61	-1.9
2,008,429	+		DZA65_RS09550	0.62	-0.5
2,008,430	-		DZA65_RS09550	0.62	+0.1
2,008,466	-		DZA65_RS09550	0.69	-0.3
2,008,490	+		DZA65_RS09550	0.73	+1.2
2,008,490	+		DZA65_RS09550	0.73	+0.9
2,008,490	+		DZA65_RS09550	0.73	-0.8
2,008,490	+		DZA65_RS09550	0.73	-1.5
2,008,491	-		DZA65_RS09550	0.73	+0.3
2,008,530	+		DZA65_RS09550	0.80	-1.2
2,008,530	+		DZA65_RS09550	0.80	-1.0
2,008,530	+		DZA65_RS09550	0.80	-0.5
2,008,531	-		DZA65_RS09550	0.80	-0.1
2,008,531	-		DZA65_RS09550	0.80	-1.1
2,008,531	-		DZA65_RS09550	0.80	+0.3
2,008,574	-		DZA65_RS09550	0.87	-2.1
2,008,602	+				+0.1
2,008,603	-				+0.9
2,008,603	-				+0.5
2,008,603	-				+2.3
2,008,652	+				-0.9
2,008,652	+				-1.3
2,008,652	+				-0.9
2,008,652	+				+0.8
2,008,652	+				+0.4
2,008,652	+				+0.9
2,008,653	-				-0.9
2,008,653	-				-0.2
2,008,653	-				-0.9
2,008,653	-				+0.2
2,008,653	-				+1.4
2,008,653	-				-0.3
2,008,653	-				-0.6
2,008,658	-				+0.0
2,008,658	-				-1.7
2,008,661	-				+0.1
2,008,702	+				-0.9
2,008,702	+				-0.1
2,008,702	+				-1.1
2,008,758	+				-0.1
2,008,785	-				-1.0
2,008,827	-				-0.3
2,008,827	-				-0.2
2,008,865	+		DZA65_RS09555	0.13	-0.1
2,008,877	+		DZA65_RS09555	0.17	-1.3
2,008,877	+		DZA65_RS09555	0.17	-2.6
2,008,877	+		DZA65_RS09555	0.17	+0.7
2,008,877	+		DZA65_RS09555	0.17	-0.5
2,008,878	-		DZA65_RS09555	0.18	+0.7
2,008,878	-		DZA65_RS09555	0.18	-0.1
2,008,878	-		DZA65_RS09555	0.18	-0.5
2,008,922	+		DZA65_RS09555	0.35	-0.7
2,008,923	-		DZA65_RS09555	0.35	+0.1
2,008,949	+		DZA65_RS09555	0.45	-1.6
2,008,949	+		DZA65_RS09555	0.45	+0.7
2,008,950	-		DZA65_RS09555	0.46	-1.4
2,008,950	-		DZA65_RS09555	0.46	+0.2