Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09535

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,003,055	-		DZA65_RS09530	0.18	+1.0
2,003,118	+		DZA65_RS09530	0.24	-1.9
2,003,118	+		DZA65_RS09530	0.24	-0.2
2,003,119	-		DZA65_RS09530	0.24	-0.5
2,003,176	+		DZA65_RS09530	0.29	-0.6
2,003,176	+		DZA65_RS09530	0.29	-0.8
2,003,177	-		DZA65_RS09530	0.29	-1.1
2,003,177	-		DZA65_RS09530	0.29	-0.9
2,003,177	-		DZA65_RS09530	0.29	+0.4
2,003,177	-		DZA65_RS09530	0.29	+0.9
2,003,177	-		DZA65_RS09530	0.29	-0.4
2,003,177	-		DZA65_RS09530	0.29	+0.1
2,003,281	+		DZA65_RS09530	0.39	-0.9
2,003,281	+		DZA65_RS09530	0.39	-0.6
2,003,329	-		DZA65_RS09530	0.43	-0.1
2,003,441	+		DZA65_RS09530	0.53	-1.6
2,003,498	+		DZA65_RS09530	0.59	+0.1
2,003,498	+		DZA65_RS09530	0.59	-1.0
2,003,509	+		DZA65_RS09530	0.60	-0.7
2,003,509	+		DZA65_RS09530	0.60	-1.1
2,003,509	+		DZA65_RS09530	0.60	-0.9
2,003,509	+		DZA65_RS09530	0.60	-2.2
2,003,510	-		DZA65_RS09530	0.60	+0.6
2,003,510	-		DZA65_RS09530	0.60	-1.3
2,003,510	-		DZA65_RS09530	0.60	-0.0
2,003,510	-		DZA65_RS09530	0.60	-0.2
2,003,555	+		DZA65_RS09530	0.64	-0.9
2,003,555	+		DZA65_RS09530	0.64	-0.3
2,003,555	+		DZA65_RS09530	0.64	-0.7
2,003,555	+		DZA65_RS09530	0.64	-1.5
2,003,556	-		DZA65_RS09530	0.64	-1.3
2,003,556	-		DZA65_RS09530	0.64	-2.1
2,003,556	-				+1.7
2,003,564	+		DZA65_RS09530	0.65	-0.1
2,003,565	-		DZA65_RS09530	0.65	-1.7
2,003,623	+		DZA65_RS09530	0.70	+0.0
2,003,623	+		DZA65_RS09530	0.70	+0.6
2,003,624	-		DZA65_RS09530	0.70	-0.7
2,003,624	-		DZA65_RS09530	0.70	-0.3
2,003,644	+		DZA65_RS09530	0.72	-0.5
2,003,644	+		DZA65_RS09530	0.72	+0.4
2,003,644	+		DZA65_RS09530	0.72	-0.0
2,003,644	+		DZA65_RS09530	0.72	-0.1
2,003,645	-		DZA65_RS09530	0.72	+0.2
2,003,664	-		DZA65_RS09530	0.74	-0.7
2,003,728	+		DZA65_RS09530	0.80	-0.1
2,003,729	-		DZA65_RS09530	0.80	-0.7
2,003,729	-		DZA65_RS09530	0.80	-0.9
2,003,729	-		DZA65_RS09530	0.80	-0.4
2,003,802	-		DZA65_RS09530	0.86	+0.4
2,003,876	+				+0.3
2,003,926	-				-1.0
2,003,934	+				-0.0
2,003,934	+				+0.4
2,003,935	-				+1.1
2,003,941	+				-1.1
2,003,941	+				-0.9
2,003,941	+				-0.9
2,003,942	-				-1.9
2,003,942	-				+0.1
2,003,942	-				-1.3
2,003,942	-				-0.3
2,003,942	-				-0.9
2,003,942	-				+1.2
2,003,942	-				-0.8
2,004,004	+				-1.2
2,004,004	+				-0.3
2,004,004	+				-0.5
2,004,005	-				-2.1
2,004,005	-				-0.6
2,004,005	-				-0.1
2,004,029	+				+0.7
2,004,030	-				-1.8
2,004,031	+				-1.3
2,004,031	+				-0.4
2,004,032	-				+0.4
2,004,070	+				+1.7
2,004,159	+		DZA65_RS09535	0.11	+0.2
2,004,239	+		DZA65_RS09535	0.15	+0.1
2,004,239	+		DZA65_RS09535	0.15	-0.7
2,004,240	-		DZA65_RS09535	0.15	-2.3
2,004,240	-		DZA65_RS09535	0.15	-2.1
2,004,241	+		DZA65_RS09535	0.15	-0.9
2,004,241	+		DZA65_RS09535	0.15	-0.7
2,004,241	+		DZA65_RS09535	0.15	-1.6
2,004,241	+		DZA65_RS09535	0.15	+1.3
2,004,241	+		DZA65_RS09535	0.15	-0.9
2,004,241	+		DZA65_RS09535	0.15	-0.9
2,004,242	-		DZA65_RS09535	0.16	-2.1
2,004,242	-		DZA65_RS09535	0.16	+0.7
2,004,242	-		DZA65_RS09535	0.16	-1.4
2,004,242	-		DZA65_RS09535	0.16	-1.9
2,004,254	+		DZA65_RS09535	0.16	+0.1
2,004,254	+		DZA65_RS09535	0.16	-1.0
2,004,254	+		DZA65_RS09535	0.16	-3.6
2,004,254	+		DZA65_RS09535	0.16	-0.7
2,004,254	+		DZA65_RS09535	0.16	+0.1
2,004,255	-		DZA65_RS09535	0.16	+0.1
2,004,255	-		DZA65_RS09535	0.16	+0.1
2,004,256	+		DZA65_RS09535	0.16	-0.6
2,004,256	+		DZA65_RS09535	0.16	+0.2
2,004,257	-		DZA65_RS09535	0.16	-0.5
2,004,257	-		DZA65_RS09535	0.16	+0.1
2,004,257	-		DZA65_RS09535	0.16	-0.0
2,004,353	+		DZA65_RS09535	0.22	-3.0
2,004,354	-		DZA65_RS09535	0.22	+0.7
2,004,413	+		DZA65_RS09535	0.25	-0.5
2,004,414	-		DZA65_RS09535	0.25	-1.6
2,004,414	-		DZA65_RS09535	0.25	-0.5
2,004,414	-		DZA65_RS09535	0.25	+0.5
2,004,414	-		DZA65_RS09535	0.25	-0.9
2,004,433	+		DZA65_RS09535	0.26	-2.0
2,004,433	+		DZA65_RS09535	0.26	-0.3
2,004,433	+		DZA65_RS09535	0.26	-0.7
2,004,433	+		DZA65_RS09535	0.26	-0.6
2,004,433	+		DZA65_RS09535	0.26	+1.0
2,004,433	+		DZA65_RS09535	0.26	-2.3
2,004,433	+		DZA65_RS09535	0.26	+0.0
2,004,433	+		DZA65_RS09535	0.26	-0.7
2,004,433	+		DZA65_RS09535	0.26	-0.5
2,004,433	+		DZA65_RS09535	0.26	-1.6
2,004,433	+		DZA65_RS09535	0.26	+1.0
2,004,434	-		DZA65_RS09535	0.26	-1.2
2,004,434	-		DZA65_RS09535	0.26	-0.4
2,004,434	-		DZA65_RS09535	0.26	-0.4
2,004,434	-		DZA65_RS09535	0.26	-1.9
2,004,434	-		DZA65_RS09535	0.26	-1.2
2,004,434	-		DZA65_RS09535	0.26	+0.7
2,004,434	-		DZA65_RS09535	0.26	+0.0
2,004,434	-		DZA65_RS09535	0.26	+0.4
2,004,434	-		DZA65_RS09535	0.26	-0.4
2,004,495	-		DZA65_RS09535	0.29	-1.5
2,004,495	-		DZA65_RS09535	0.29	+1.0
2,004,574	+		DZA65_RS09535	0.34	+0.2
2,004,660	+		DZA65_RS09535	0.39	-0.4
2,004,660	+		DZA65_RS09535	0.39	-0.5
2,004,731	-		DZA65_RS09535	0.42	+0.1
2,004,731	-		DZA65_RS09535	0.42	-0.5
2,004,735	-		DZA65_RS09535	0.43	+1.7
2,004,735	-		DZA65_RS09535	0.43	+0.4
2,004,738	-		DZA65_RS09535	0.43	-0.7
2,004,809	+		DZA65_RS09535	0.47	-0.3
2,004,830	+		DZA65_RS09535	0.48	-0.9
2,004,831	-		DZA65_RS09535	0.48	+0.3
2,004,881	+		DZA65_RS09535	0.51	-0.0
2,004,881	+		DZA65_RS09535	0.51	+0.2
2,004,890	-		DZA65_RS09535	0.51	+1.4
2,004,890	-		DZA65_RS09535	0.51	+0.1
2,004,948	+		DZA65_RS09535	0.54	-0.7
2,004,948	+		DZA65_RS09535	0.54	-0.2
2,004,949	-		DZA65_RS09535	0.55	-0.7
2,004,949	-		DZA65_RS09535	0.55	+0.0
2,004,949	-		DZA65_RS09535	0.55	-0.6
2,004,949	-		DZA65_RS09535	0.55	+1.2
2,005,006	+		DZA65_RS09535	0.58	+0.9
2,005,007	-		DZA65_RS09535	0.58	-1.5
2,005,007	-		DZA65_RS09535	0.58	-0.1
2,005,007	-		DZA65_RS09535	0.58	-1.3
2,005,007	-		DZA65_RS09535	0.58	-0.4
2,005,009	+		DZA65_RS09535	0.58	-0.2
2,005,009	+		DZA65_RS09535	0.58	-1.0
2,005,009	+		DZA65_RS09535	0.58	-2.8
2,005,010	-		DZA65_RS09535	0.58	+1.4
2,005,010	-		DZA65_RS09535	0.58	-3.7
2,005,036	+		DZA65_RS09535	0.59	+0.2
2,005,090	+		DZA65_RS09535	0.62	+0.4
2,005,099	+		DZA65_RS09535	0.63	+0.2
2,005,256	+		DZA65_RS09535	0.71	-1.0
2,005,256	+		DZA65_RS09535	0.71	-0.4
2,005,257	-		DZA65_RS09535	0.72	-1.0
2,005,257	-		DZA65_RS09535	0.72	-0.1
2,005,303	+		DZA65_RS09535	0.74	+0.5
2,005,303	+		DZA65_RS09535	0.74	-0.2
2,005,304	-				-1.3
2,005,304	-		DZA65_RS09535	0.74	-1.9
2,005,304	-		DZA65_RS09535	0.74	+0.4
2,005,304	-		DZA65_RS09535	0.74	-1.1
2,005,306	+		DZA65_RS09535	0.74	-0.3
2,005,306	+				-0.9
2,005,307	-		DZA65_RS09535	0.74	-0.3
2,005,343	+		DZA65_RS09535	0.76	-0.5
2,005,343	+		DZA65_RS09535	0.76	-1.7
2,005,343	+				+1.1
2,005,343	+		DZA65_RS09535	0.76	-0.6
2,005,343	+		DZA65_RS09535	0.76	-1.5
2,005,343	+		DZA65_RS09535	0.76	-0.3
2,005,343	+		DZA65_RS09535	0.76	-1.4
2,005,343	+		DZA65_RS09535	0.76	+0.9
2,005,344	-		DZA65_RS09535	0.76	-0.6
2,005,344	-		DZA65_RS09535	0.76	-1.5
2,005,344	-		DZA65_RS09535	0.76	+0.8
2,005,344	-		DZA65_RS09535	0.76	-1.6
2,005,344	-		DZA65_RS09535	0.76	-0.4
2,005,344	-		DZA65_RS09535	0.76	+0.3
2,005,344	-		DZA65_RS09535	0.76	-2.5
2,005,344	-		DZA65_RS09535	0.76	-0.5
2,005,344	-		DZA65_RS09535	0.76	-0.7
2,005,352	+		DZA65_RS09535	0.77	-0.8
2,005,353	-		DZA65_RS09535	0.77	+0.3
2,005,353	-		DZA65_RS09535	0.77	-2.0
2,005,432	+		DZA65_RS09535	0.81	-1.7
2,005,433	-		DZA65_RS09535	0.81	-0.4
2,005,433	-		DZA65_RS09535	0.81	-0.1
2,005,445	-		DZA65_RS09535	0.82	-1.9
2,005,472	-		DZA65_RS09535	0.83	-1.9
2,005,472	-		DZA65_RS09535	0.83	-1.4
2,005,474	+		DZA65_RS09535	0.83	-0.2
2,005,474	+		DZA65_RS09535	0.83	+0.7
2,005,474	+		DZA65_RS09535	0.83	-0.3
2,005,475	-		DZA65_RS09535	0.84	+0.0
2,005,504	+		DZA65_RS09535	0.85	-1.4
2,005,504	+		DZA65_RS09535	0.85	-0.7
2,005,504	+		DZA65_RS09535	0.85	-0.3
2,005,505	-		DZA65_RS09535	0.85	-0.6
2,005,505	-		DZA65_RS09535	0.85	+0.2
2,005,505	-		DZA65_RS09535	0.85	-2.6
2,005,517	-		DZA65_RS09535	0.86	-0.6
2,005,690	+				-2.2
2,005,690	+				-1.2
2,005,690	+				-1.1
2,005,690	+				-0.6
2,005,690	+				-0.0
2,005,690	+				+0.0
2,005,691	-				-0.9
2,005,691	-				-0.6
2,005,691	-				-1.3
2,005,691	-				-0.9
2,005,691	-				+0.5
2,005,754	+				+0.7
2,005,767	-				-2.1
2,005,767	-				-0.5
2,005,767	-				-0.9
2,005,872	-				-0.5
2,005,887	-				-0.1
2,005,887	-				+1.0
2,005,896	+				-0.1
2,005,896	+				-0.9
2,005,896	+				+0.1
2,005,896	+				-0.3
2,005,897	-				+0.0
2,005,910	+				+1.4
2,005,910	+				-1.2
2,005,910	+				-1.5
2,005,911	-				-0.3
2,005,911	-				-0.9
2,005,911	-				+0.1
2,005,933	+				-2.2
2,005,954	-				+0.8
2,005,954	-				-0.6
2,005,956	+				+0.4
2,006,081	+		DZA65_RS09540	0.10	+0.3
2,006,082	-		DZA65_RS09540	0.10	+0.1
2,006,082	-		DZA65_RS09540	0.10	+0.1
2,006,082	-		DZA65_RS09540	0.10	-2.2
2,006,082	-		DZA65_RS09540	0.10	-0.2
2,006,085	+		DZA65_RS09540	0.11	-1.0
2,006,085	+		DZA65_RS09540	0.11	-0.3
2,006,086	-		DZA65_RS09540	0.11	+1.4
2,006,086	-		DZA65_RS09540	0.11	+0.7
2,006,153	+		DZA65_RS09540	0.23	-1.3
2,006,153	+		DZA65_RS09540	0.23	+0.7
2,006,153	+		DZA65_RS09540	0.23	-1.5
2,006,154	-		DZA65_RS09540	0.23	+0.2
2,006,154	-		DZA65_RS09540	0.23	+1.2
2,006,154	-		DZA65_RS09540	0.23	+0.7
2,006,154	-		DZA65_RS09540	0.23	+0.7
2,006,154	-		DZA65_RS09540	0.23	+0.7
2,006,154	-		DZA65_RS09540	0.23	+0.7
2,006,217	+		DZA65_RS09540	0.34	-0.3
2,006,256	-		DZA65_RS09540	0.40	+0.1
2,006,256	-		DZA65_RS09540	0.40	+0.8
2,006,256	-		DZA65_RS09540	0.40	+0.3
2,006,256	-		DZA65_RS09540	0.40	+0.2
2,006,256	-		DZA65_RS09540	0.40	-0.1
2,006,401	-		DZA65_RS09540	0.66	-0.4
2,006,449	+		DZA65_RS09540	0.74	+0.7
2,006,449	+		DZA65_RS09540	0.74	-0.5
2,006,449	+		DZA65_RS09540	0.74	+0.5
2,006,449	+		DZA65_RS09540	0.74	+0.1
2,006,450	-		DZA65_RS09540	0.74	-2.6
2,006,450	-		DZA65_RS09540	0.74	-0.2
2,006,450	-		DZA65_RS09540	0.74	-1.2
2,006,482	-		DZA65_RS09540	0.80	+1.3
2,006,494	-		DZA65_RS09540	0.82	+0.4
2,006,508	+		DZA65_RS09540	0.84	-0.9
2,006,518	-		DZA65_RS09540	0.86	+0.5
2,006,568	+				+0.1
2,006,568	+				-0.8
2,006,568	+				-0.7
2,006,568	+				-0.4
2,006,568	+				-0.9
2,006,568	+				-1.9
2,006,569	-				+0.9
2,006,569	-				+0.1
2,006,569	-				+0.2
2,006,569	-				+0.0
2,006,569	-				-1.5
2,006,569	-				+0.0
2,006,569	-				-0.1
2,006,569	-				+0.4
2,006,569	-				+0.2
2,006,570	+				+0.6
2,006,570	+				-0.3
2,006,570	+				+0.6
2,006,570	+				-0.4
2,006,570	+				-0.0
2,006,570	+				+1.0
2,006,571	-				+1.4
2,006,571	-				+0.3
2,006,571	-				-0.0
2,006,571	-				-0.4
2,006,571	-				+0.0
2,006,571	-				-1.6
2,006,605	+				-0.7
2,006,605	+				+0.2
2,006,605	+				-1.5
2,006,606	-				+0.2
2,006,606	-				+0.0
2,006,606	-				+0.4
2,006,652	-				-1.0
2,006,675	+				+0.5
2,006,675	+				+0.1
2,006,675	+				-0.0
2,006,676	-				+0.1
2,006,676	-				-0.3
2,006,682	-				+0.5
2,006,708	+				-1.1
2,006,716	+				-1.1
2,006,717	-				-0.6
2,006,717	-				-0.2
2,006,719	+				-0.5
2,006,719	+				+0.1
2,006,719	+				-0.3
2,006,720	-				-1.3
2,006,720	-				+0.3
2,006,767	+				-0.5
2,006,768	-				-0.5
2,006,768	-				+0.5