Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09150

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,926,792	-		DZA65_RS09145	0.42	+1.6
1,926,941	+		DZA65_RS09145	0.53	+0.1
1,926,966	+				-0.6
1,926,966	+		DZA65_RS09145	0.55	-1.9
1,926,966	+		DZA65_RS09145	0.55	-1.9
1,926,966	+		DZA65_RS09145	0.55	-1.1
1,926,966	+		DZA65_RS09145	0.55	-0.4
1,926,967	-		DZA65_RS09145	0.55	-2.9
1,926,967	-		DZA65_RS09145	0.55	-0.5
1,926,967	-		DZA65_RS09145	0.55	-0.5
1,926,967	-		DZA65_RS09145	0.55	+0.1
1,927,085	-		DZA65_RS09145	0.64	+0.2
1,927,416	+		DZA65_RS09145	0.89	-0.9
1,927,416	+		DZA65_RS09145	0.89	-0.0
1,927,416	+		DZA65_RS09145	0.89	+1.2
1,927,416	+		DZA65_RS09145	0.89	+0.7
1,927,417	-				+0.7
1,927,417	-		DZA65_RS09145	0.89	+0.4
1,927,417	-		DZA65_RS09145	0.89	-0.8
1,927,417	-		DZA65_RS09145	0.89	-0.4
1,927,417	-		DZA65_RS09145	0.89	-0.5
1,927,417	-		DZA65_RS09145	0.89	-0.6
1,927,727	-				-0.1
1,927,727	-				-0.6
1,927,764	+				-0.5
1,927,764	+				+1.1
1,927,765	-				-0.0
1,927,765	-				-0.4
1,927,765	-				+0.6
1,927,797	-				-0.1
1,927,797	-				+0.4
1,927,829	+				-0.3
1,927,830	-				-0.9
1,927,859	+				-0.8
1,927,859	+				+0.1
1,927,859	+				-0.3
1,927,859	+				+0.7
1,927,859	+				+1.9
1,927,859	+				-0.9
1,927,859	+				-0.5
1,927,859	+				+0.3
1,927,859	+				-0.9
1,927,859	+				-0.1
1,927,859	+				-0.3
1,927,859	+				+0.1
1,927,860	-				-0.5
1,927,860	-				-0.3
1,927,860	-				-0.7
1,927,860	-				-1.2
1,927,860	-				-0.9
1,927,860	-				-1.8
1,927,860	-				-0.0
1,927,860	-				-2.3
1,927,860	-				+0.1
1,927,860	-				-1.3
1,927,860	-				+0.0
1,927,860	-				-0.6
1,927,860	-				-0.7
1,927,860	-				-2.4
1,927,860	-				-0.3
1,927,860	-				+0.2
1,927,864	+				-0.8
1,927,864	+				-0.0
1,927,864	+				-1.7
1,927,865	-				-0.7
1,927,865	-				+0.2
1,927,865	-				-0.0
1,927,865	-				-0.0
1,927,865	-				-0.9
1,927,942	+				-1.1
1,927,943	-				-1.9
1,927,943	-				-1.2
1,928,148	+		DZA65_RS09150	0.16	-0.8
1,928,171	+		DZA65_RS09150	0.17	-0.2
1,928,242	+		DZA65_RS09150	0.20	-0.3
1,928,242	+		DZA65_RS09150	0.20	+0.7
1,928,251	-		DZA65_RS09150	0.20	+0.4
1,928,351	+		DZA65_RS09150	0.24	+0.4
1,928,351	+		DZA65_RS09150	0.24	-0.4
1,928,351	+		DZA65_RS09150	0.24	-0.5
1,928,351	+		DZA65_RS09150	0.24	-0.3
1,928,351	+		DZA65_RS09150	0.24	-0.1
1,928,351	+		DZA65_RS09150	0.24	+2.7
1,928,351	+		DZA65_RS09150	0.24	-1.5
1,928,351	+		DZA65_RS09150	0.24	-0.4
1,928,351	+		DZA65_RS09150	0.24	-1.3
1,928,351	+		DZA65_RS09150	0.24	-0.7
1,928,352	-		DZA65_RS09150	0.24	-0.5
1,928,352	-		DZA65_RS09150	0.24	+0.5
1,928,352	-		DZA65_RS09150	0.24	-0.3
1,928,352	-		DZA65_RS09150	0.24	-0.7
1,928,352	-		DZA65_RS09150	0.24	-0.6
1,928,355	+		DZA65_RS09150	0.24	-0.9
1,928,355	+				-0.3
1,928,355	+		DZA65_RS09150	0.24	+0.3
1,928,355	+		DZA65_RS09150	0.24	+0.6
1,928,355	+		DZA65_RS09150	0.24	-0.3
1,928,355	+		DZA65_RS09150	0.24	-0.7
1,928,355	+		DZA65_RS09150	0.24	-0.6
1,928,355	+		DZA65_RS09150	0.24	+0.0
1,928,356	-		DZA65_RS09150	0.24	-0.7
1,928,356	-		DZA65_RS09150	0.24	-0.0
1,928,356	-		DZA65_RS09150	0.24	+1.0
1,928,356	-		DZA65_RS09150	0.24	-0.2
1,928,448	+		DZA65_RS09150	0.28	-2.1
1,928,448	+		DZA65_RS09150	0.28	+0.5
1,928,448	+		DZA65_RS09150	0.28	+1.1
1,928,448	+		DZA65_RS09150	0.28	-0.7
1,928,449	-		DZA65_RS09150	0.28	-0.4
1,928,484	+		DZA65_RS09150	0.30	-0.6
1,928,484	+		DZA65_RS09150	0.30	-2.1
1,928,484	+		DZA65_RS09150	0.30	-0.4
1,928,484	+		DZA65_RS09150	0.30	-0.6
1,928,484	+		DZA65_RS09150	0.30	-0.2
1,928,484	+		DZA65_RS09150	0.30	-1.6
1,928,484	+		DZA65_RS09150	0.30	+0.3
1,928,485	-		DZA65_RS09150	0.30	-0.3
1,928,485	-		DZA65_RS09150	0.30	-0.3
1,928,526	+		DZA65_RS09150	0.32	-0.7
1,928,526	+		DZA65_RS09150	0.32	-1.3
1,928,526	+		DZA65_RS09150	0.32	-1.1
1,928,526	+		DZA65_RS09150	0.32	-0.1
1,928,526	+		DZA65_RS09150	0.32	-0.9
1,928,526	+		DZA65_RS09150	0.32	-1.6
1,928,526	+		DZA65_RS09150	0.32	+0.4
1,928,526	+		DZA65_RS09150	0.32	+0.0
1,928,526	+		DZA65_RS09150	0.32	-1.3
1,928,526	+		DZA65_RS09150	0.32	-0.3
1,928,527	-		DZA65_RS09150	0.32	-0.9
1,928,527	-		DZA65_RS09150	0.32	-0.3
1,928,527	-		DZA65_RS09150	0.32	+0.1
1,928,527	-		DZA65_RS09150	0.32	-1.0
1,928,527	-		DZA65_RS09150	0.32	-0.7
1,928,527	-		DZA65_RS09150	0.32	-0.5
1,928,527	-		DZA65_RS09150	0.32	-0.3
1,928,787	+		DZA65_RS09150	0.43	-0.9
1,928,787	+		DZA65_RS09150	0.43	-0.7
1,928,788	-		DZA65_RS09150	0.43	-1.4
1,928,799	+		DZA65_RS09150	0.43	-0.0
1,928,800	-		DZA65_RS09150	0.43	-2.7
1,928,800	-		DZA65_RS09150	0.43	-1.0
1,928,880	+		DZA65_RS09150	0.47	+1.0
1,928,880	+		DZA65_RS09150	0.47	+0.2
1,928,880	+		DZA65_RS09150	0.47	-0.5
1,928,880	+		DZA65_RS09150	0.47	+1.0
1,928,880	+		DZA65_RS09150	0.47	+0.2
1,928,880	+		DZA65_RS09150	0.47	-0.6
1,928,880	+		DZA65_RS09150	0.47	+0.7
1,928,881	-		DZA65_RS09150	0.47	-0.3
1,928,881	-		DZA65_RS09150	0.47	-1.0
1,928,881	-		DZA65_RS09150	0.47	-0.4
1,928,881	-		DZA65_RS09150	0.47	-0.1
1,928,907	+		DZA65_RS09150	0.48	-0.6
1,928,908	-		DZA65_RS09150	0.48	-1.5
1,929,029	+		DZA65_RS09150	0.53	-0.9
1,929,029	+		DZA65_RS09150	0.53	-0.7
1,929,030	-		DZA65_RS09150	0.53	-0.3
1,929,096	-		DZA65_RS09150	0.56	-0.3
1,929,099	-		DZA65_RS09150	0.56	-1.7
1,929,145	+		DZA65_RS09150	0.58	-1.0
1,929,145	+		DZA65_RS09150	0.58	+0.3
1,929,145	+		DZA65_RS09150	0.58	-0.3
1,929,145	+		DZA65_RS09150	0.58	-1.7
1,929,145	+		DZA65_RS09150	0.58	-0.3
1,929,145	+		DZA65_RS09150	0.58	+0.9
1,929,145	+		DZA65_RS09150	0.58	+1.0
1,929,145	+		DZA65_RS09150	0.58	+0.7
1,929,145	+		DZA65_RS09150	0.58	-1.4
1,929,145	+		DZA65_RS09150	0.58	-1.0
1,929,145	+		DZA65_RS09150	0.58	+0.3
1,929,145	+		DZA65_RS09150	0.58	+0.7
1,929,145	+		DZA65_RS09150	0.58	-1.1
1,929,146	-		DZA65_RS09150	0.58	+0.4
1,929,146	-		DZA65_RS09150	0.58	-0.5
1,929,146	-		DZA65_RS09150	0.58	-0.5
1,929,146	-		DZA65_RS09150	0.58	+0.3
1,929,146	-		DZA65_RS09150	0.58	+0.6
1,929,146	-		DZA65_RS09150	0.58	-0.4
1,929,146	-		DZA65_RS09150	0.58	+0.5
1,929,146	-		DZA65_RS09150	0.58	-0.4
1,929,146	-		DZA65_RS09150	0.58	-0.7
1,929,146	-		DZA65_RS09150	0.58	-0.3
1,929,146	-		DZA65_RS09150	0.58	-1.0
1,929,146	-		DZA65_RS09150	0.58	-0.6
1,929,146	-		DZA65_RS09150	0.58	-0.2
1,929,146	-		DZA65_RS09150	0.58	-1.9
1,929,147	+		DZA65_RS09150	0.58	-0.7
1,929,147	+		DZA65_RS09150	0.58	-0.7
1,929,147	+		DZA65_RS09150	0.58	+0.4
1,929,147	+		DZA65_RS09150	0.58	-2.1
1,929,147	+		DZA65_RS09150	0.58	+2.3
1,929,147	+		DZA65_RS09150	0.58	-1.1
1,929,148	-		DZA65_RS09150	0.58	+0.3
1,929,148	-		DZA65_RS09150	0.58	-0.3
1,929,148	-		DZA65_RS09150	0.58	-0.3
1,929,174	+		DZA65_RS09150	0.60	+0.5
1,929,176	+		DZA65_RS09150	0.60	-0.3
1,929,176	+		DZA65_RS09150	0.60	-1.1
1,929,177	-		DZA65_RS09150	0.60	+1.1
1,929,190	-		DZA65_RS09150	0.60	+0.5
1,929,190	-		DZA65_RS09150	0.60	-0.0
1,929,192	+		DZA65_RS09150	0.60	-0.5
1,929,192	+		DZA65_RS09150	0.60	-0.3
1,929,192	+		DZA65_RS09150	0.60	+0.1
1,929,193	-		DZA65_RS09150	0.60	+0.6
1,929,249	+		DZA65_RS09150	0.63	-0.9
1,929,308	-		DZA65_RS09150	0.65	-1.6
1,929,585	+		DZA65_RS09150	0.77	-2.1
1,929,586	-		DZA65_RS09150	0.77	-2.3
1,929,586	-		DZA65_RS09150	0.77	-0.1
1,929,645	+		DZA65_RS09150	0.80	+0.1
1,929,645	+		DZA65_RS09150	0.80	-0.4
1,929,646	-		DZA65_RS09150	0.80	-0.7
1,929,646	-		DZA65_RS09150	0.80	+0.7
1,929,646	-		DZA65_RS09150	0.80	-1.0
1,929,646	-		DZA65_RS09150	0.80	-0.3
1,929,648	+		DZA65_RS09150	0.80	-0.4
1,929,648	+		DZA65_RS09150	0.80	-2.3
1,929,649	-		DZA65_RS09150	0.80	-0.5
1,929,649	-		DZA65_RS09150	0.80	-0.1
1,929,649	-		DZA65_RS09150	0.80	-0.1
1,929,649	-		DZA65_RS09150	0.80	-2.0
1,929,699	+				-0.6
1,929,699	+		DZA65_RS09150	0.82	-0.4
1,929,700	-		DZA65_RS09150	0.82	-0.3
1,929,700	-		DZA65_RS09150	0.82	-1.3
1,929,700	-		DZA65_RS09150	0.82	+0.1
1,929,700	-		DZA65_RS09150	0.82	+0.1
1,929,700	-		DZA65_RS09150	0.82	-1.3
1,929,711	+		DZA65_RS09150	0.83	+0.4
1,929,711	+		DZA65_RS09150	0.83	+0.0
1,929,712	-		DZA65_RS09150	0.83	-0.2
1,929,712	-		DZA65_RS09150	0.83	-0.5
1,929,712	-		DZA65_RS09150	0.83	-0.5
1,929,738	+		DZA65_RS09150	0.84	-1.0
1,929,762	+		DZA65_RS09150	0.85	-0.7
1,929,762	+		DZA65_RS09150	0.85	+0.7
1,929,762	+		DZA65_RS09150	0.85	-0.6
1,929,762	+		DZA65_RS09150	0.85	-0.5
1,929,763	-		DZA65_RS09150	0.85	-0.3
1,929,763	-		DZA65_RS09150	0.85	-0.9
1,929,763	-		DZA65_RS09150	0.85	+1.9
1,929,763	-		DZA65_RS09150	0.85	+0.6
1,929,763	-		DZA65_RS09150	0.85	-1.1
1,929,851	+		DZA65_RS09150	0.89	+0.1
1,929,977	+				-0.5
1,929,977	+				+0.3
1,929,978	-				-2.1
1,930,017	+				-1.4
1,930,017	+				-0.1
1,930,018	-				-2.5
1,930,106	+				-0.5
1,930,106	+				-0.5
1,930,107	-				-1.0
1,930,107	-				-1.1
1,930,116	+				+0.2
1,930,117	-				-0.7
1,930,165	+				-0.9
1,930,166	-				-0.6
1,930,166	-				-0.3
1,930,169	+				-0.9
1,930,170	-				-0.3
1,930,170	-				-0.3
1,930,170	-				+0.4
1,930,181	-				+0.4
1,930,181	-				+0.0
1,930,181	-				-0.1
1,930,181	-				-0.1
1,930,195	+				-2.1
1,930,199	+				+0.5
1,930,199	+				-1.5
1,930,300	+				+0.5
1,930,311	+				-0.9
1,930,311	+				-0.6
1,930,311	+				-0.4
1,930,311	+				-0.6
1,930,311	+				+0.0
1,930,311	+				-1.6
1,930,311	+				+1.5
1,930,312	-				+0.1
1,930,312	-				-1.4
1,930,312	-				-1.1
1,930,312	-				-0.1
1,930,313	+				-1.7
1,930,313	+				+0.0
1,930,314	-				-0.9
1,930,314	-				-0.7
1,930,314	-				-0.3
1,930,314	-				-0.6
1,930,346	-				-0.1
1,930,450	+				-0.2
1,930,450	+				-0.5
1,930,467	+				+0.7
1,930,467	+				-0.8
1,930,467	+				+0.3
1,930,467	+				+0.5
1,930,467	+				+0.1
1,930,467	+				-0.1
1,930,468	-				+0.4
1,930,468	-				+0.3
1,930,468	-				-0.5
1,930,468	-				-0.7
1,930,468	-				-0.4
1,930,481	+				-2.3
1,930,481	+				-1.6
1,930,482	-				+1.1
1,930,482	-				-0.6
1,930,483	+				-0.3
1,930,484	-				+0.1
1,930,484	-				-0.6
1,930,484	-				+0.6
1,930,502	+				-0.1
1,930,569	-				-0.2
1,930,581	+				+0.6
1,930,581	+				-0.9
1,930,582	-				-0.3
1,930,582	-				-0.5
1,930,582	-				-1.3
1,930,582	-				-0.5
1,930,594	+				-0.9
1,930,595	-				+2.7
1,930,595	-				-0.0
1,930,595	-				-0.9
1,930,595	-				+0.4
1,930,601	-				+0.1
1,930,607	+				-0.1
1,930,608	-				+0.0
1,930,608	-				-0.3
1,930,608	-				-0.1
1,930,608	-				-0.7
1,930,620	+				-0.3
1,930,620	+				+0.8
1,930,621	-				+0.2
1,930,626	+				+0.2
1,930,627	-				-1.3
1,930,627	-				+0.5
1,930,719	+				-0.5
1,930,742	+				-0.3
1,930,742	+				+0.4
1,930,742	+				-0.3
1,930,743	-				-0.1
1,930,743	-				-0.0
1,930,743	-				+0.9
1,930,744	+				-0.1
1,930,744	+				-1.1
1,930,744	+				-0.5
1,930,744	+				+2.0
1,930,745	-				-0.9
1,930,745	-				-0.9
1,930,835	+				+0.2
1,930,836	-				-0.1
1,930,836	-				-0.0
1,931,009	-		DZA65_RS09155	0.15	-0.9
1,931,051	+		DZA65_RS09155	0.17	-0.6
1,931,052	-		DZA65_RS09155	0.17	+1.5