Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08220

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG

download strain data

Per-strain Table

Position	Strand	LocusTag	Fraction	PDB
				remove
1,727,437	+			+0.4
1,727,521	+			-1.5
1,727,527	-			+0.7
1,727,650	-			-0.9
1,727,650	-			+1.4
1,727,650	-			-0.4
1,727,650	-			+0.3
1,727,676	+			-1.2
1,727,676	+			-0.8
1,727,676	+			-0.2
1,727,676	+			-0.7
1,727,677	-			+0.5
1,727,677	-			-0.5
1,727,707	+			-0.1
1,727,707	+			-0.8
1,727,708	-			+0.8
1,727,708	-			-0.3
1,727,708	-			-2.0
1,727,753	+			+0.2
1,727,753	+			-0.9
1,727,754	-			-0.8
1,727,768	-			-0.4
1,727,768	-			-1.5
1,727,794	+			+0.0
1,727,804	+			+0.2
1,727,805	-			+0.5
1,727,810	-			+1.5
1,727,810	-			-1.0
1,727,830	-			+0.1
1,727,879	+			+1.0
1,727,900	+			-0.9
1,728,078	+			+0.3
1,728,078	+			-2.2
1,728,105	+			+0.3
1,728,119	+			-1.3
1,728,120	-			-0.2
1,728,136	-			-0.8
1,728,136	-			+1.2
1,728,254	-	DZA65_RS08215	0.62	+0.3
1,728,361	-			+0.3
1,728,395	-			+0.2
1,728,396	+			-0.4
1,728,397	-			-0.5
1,728,402	+			-1.8
1,728,402	+			+0.1
1,728,453	+	DZA65_RS08220	0.15	+0.9
1,728,453	+	DZA65_RS08220	0.15	+0.1
1,728,453	+	DZA65_RS08220	0.15	-0.2
1,728,454	-	DZA65_RS08220	0.16	-0.4
1,728,454	-	DZA65_RS08220	0.16	+0.1
1,728,523	+	DZA65_RS08220	0.45	+0.9
1,728,524	-	DZA65_RS08220	0.46	-1.8
1,728,524	-	DZA65_RS08220	0.46	+0.4
1,728,524	-	DZA65_RS08220	0.46	-0.2
1,728,524	-	DZA65_RS08220	0.46	-0.1
1,728,545	+	DZA65_RS08220	0.55	+0.7
1,728,576	+	DZA65_RS08220	0.68	+0.6
1,728,673	+			+0.4
1,728,673	+			-0.0
1,728,673	+			-0.1
1,728,674	-			+0.5
1,728,674	-			+0.4
1,728,674	-			-0.4
1,728,676	+			-0.1
1,728,676	+			-0.8
1,728,676	+			+0.2
1,728,676	+			-0.9
1,728,676	+			+0.1
1,728,677	-			-0.2
1,728,678	+			-0.6
1,728,678	+			-0.9
1,728,678	+			+0.1
1,728,678	+			+1.1
1,728,678	+			-1.0
1,728,678	+			-0.3
1,728,679	-			-0.9
1,728,684	+			-1.3
1,728,684	+			-1.0
1,728,684	+			-0.1
1,728,684	+			+0.1
1,728,684	+			+0.8
1,728,684	+			+0.1
1,728,684	+			+0.0
1,728,685	-			-1.5
1,728,685	-			-0.4
1,728,685	-			-0.2
1,728,685	-			-1.2
1,728,685	-			+0.3
1,728,685	-			-1.2
1,728,685	-			+0.3
1,728,685	-			+1.2
1,728,688	+			-0.8
1,728,688	+			-1.8
1,728,688	+			-0.6
1,728,688	+			+0.1
1,728,692	+			+1.4
1,728,692	+			+0.0
1,728,692	+			-0.2
1,728,692	+			+0.1
1,728,693	-			+1.1
1,728,693	-			-1.0
1,728,693	-			+0.8
1,728,693	-			-0.6
1,728,693	-			+0.4
1,728,693	-			-1.2
1,728,733	+			-0.5
1,728,733	+			-0.8
1,728,733	+			+1.0
1,728,738	+			+0.8
1,728,739	-			+0.6
1,728,739	-			-0.1
1,728,744	-			-0.1
1,728,800	+			-0.2
1,728,800	+			+0.4
1,728,801	-			-0.2
1,728,806	+			+0.5
1,728,807	-			-0.4
1,728,848	+			-3.8
1,728,848	+			-0.2
1,728,848	+			-0.0
1,728,848	+			-0.5
1,728,849	-			+0.3
1,728,849	-			-2.2
1,728,849	-			-0.7
1,728,849	-			-2.0
1,728,863	-			-0.5
1,728,863	-			+1.4
1,728,893	+			-0.1
1,728,893	+			-0.6
1,728,893	+			+0.4
1,728,893	+			+1.1
1,728,893	+			-0.3
1,728,894	-			-1.4
1,728,894	-			+0.2
1,728,894	-			+1.1
1,728,908	+			-2.4
1,728,909	-			+0.3
1,728,909	-			-0.0
1,728,939	-			-1.7
1,728,939	-			-0.4
1,728,939	-			-0.2
1,728,939	-			+0.2
1,728,939	-			-1.2
1,728,939	-			-1.4
1,728,984	-			-0.5
1,729,016	-			+0.8
1,729,041	+			+0.5
1,729,042	-			-0.1
1,729,042	-			-0.5
1,729,099	-			-1.5
1,729,099	-			-0.6
1,729,099	-			-0.6
1,729,107	+			-0.5
1,729,108	-			-0.5
1,729,108	-			-1.4
1,729,108	-			-2.2
1,729,109	+			-0.2
1,729,109	+			+0.8
1,729,109	+			+0.4
1,729,109	+			+2.0
1,729,109	+			-0.5
1,729,109	+			+0.3
1,729,109	+			-0.8
1,729,109	+			-0.3
1,729,110	-			-0.4
1,729,110	-			-2.4
1,729,110	-			-0.9
1,729,110	-			-1.8
1,729,110	-			-0.1
1,729,116	+			-0.4
1,729,116	+			+0.4
1,729,117	-			-0.1
1,729,168	+			-0.9
1,729,168	+			-0.6
1,729,168	+			-0.1
1,729,168	+			-1.1
1,729,168	+			-0.2
1,729,168	+			+1.1
1,729,168	+			+1.5
1,729,169	-			+0.1
1,729,169	-			+0.7
1,729,169	-			+0.5
1,729,169	-			+0.5
1,729,169	-			-0.2
1,729,169	-			-0.1
1,729,169	-			-0.3
1,729,169	-			-0.2
1,729,169	-			-0.1
1,729,169	-			-0.0
1,729,243	+			-0.0
1,729,243	+			+0.1
1,729,243	+			-0.2
1,729,243	+			-0.4
1,729,244	-			-0.6
1,729,244	-			-0.3
1,729,244	-			+0.3
1,729,244	-			-0.4
1,729,244	-			+0.3
1,729,245	+			+0.2
1,729,245	+			-2.4
1,729,245	+			-0.5
1,729,245	+			-0.5
1,729,245	+			+0.6
1,729,246	-			+1.3
1,729,246	-			+1.6
1,729,246	-			-1.1
1,729,246	-			-0.5
1,729,246	-			-0.2
1,729,246	-			+0.8
1,729,264	+			-1.7
1,729,264	+			+1.8
1,729,266	+			-0.5
1,729,266	+			+0.2
1,729,266	+			+1.6
1,729,266	+			+0.3
1,729,267	-			-0.3
1,729,267	-			+1.8
1,729,267	-			+0.2
1,729,270	+			+1.1
1,729,270	+			-1.8
1,729,271	-			+0.0
1,729,271	-			-0.2
1,729,282	-			+0.1
1,729,293	-			-0.0
1,729,294	+			-0.2
1,729,450	+	DZA65_RS08225	0.12	-0.5
1,729,450	+	DZA65_RS08225	0.12	+0.1
1,729,451	-	DZA65_RS08225	0.12	-0.8
1,729,503	+			+1.5
1,729,503	+	DZA65_RS08225	0.23	-0.3
1,729,504	-			+0.2
1,729,504	-	DZA65_RS08225	0.23	-0.5
1,729,504	-	DZA65_RS08225	0.23	+4.0
1,729,504	-	DZA65_RS08225	0.23	-1.2
1,729,504	-	DZA65_RS08225	0.23	+0.4
1,729,505	+	DZA65_RS08225	0.23	+0.7
1,729,505	+	DZA65_RS08225	0.23	-0.6
1,729,505	+	DZA65_RS08225	0.23	-0.6
1,729,505	+	DZA65_RS08225	0.23	-0.6
1,729,505	+	DZA65_RS08225	0.23	-0.9
1,729,505	+	DZA65_RS08225	0.23	+0.5
1,729,505	+	DZA65_RS08225	0.23	+1.1
1,729,505	+	DZA65_RS08225	0.23	-0.4
1,729,505	+	DZA65_RS08225	0.23	+0.8
1,729,505	+	DZA65_RS08225	0.23	-0.0
1,729,505	+	DZA65_RS08225	0.23	-0.2
1,729,505	+	DZA65_RS08225	0.23	-0.7
1,729,506	-	DZA65_RS08225	0.23	+0.3
1,729,506	-	DZA65_RS08225	0.23	+0.3
1,729,506	-	DZA65_RS08225	0.23	-0.2
1,729,506	-	DZA65_RS08225	0.23	+0.3
1,729,506	-	DZA65_RS08225	0.23	+1.5
1,729,506	-	DZA65_RS08225	0.23	-0.2
1,729,506	-	DZA65_RS08225	0.23	-1.0
1,729,506	-	DZA65_RS08225	0.23	-0.2
1,729,506	-	DZA65_RS08225	0.23	+0.6
1,729,506	-	DZA65_RS08225	0.23	-1.2
1,729,506	-	DZA65_RS08225	0.23	-0.1
1,729,506	-	DZA65_RS08225	0.23	+0.1
1,729,506	-	DZA65_RS08225	0.23	+0.5
1,729,506	-	DZA65_RS08225	0.23	-0.5
1,729,506	-	DZA65_RS08225	0.23	+0.0
1,729,506	-	DZA65_RS08225	0.23	-0.8
1,729,506	-	DZA65_RS08225	0.23	-1.1
1,729,506	-	DZA65_RS08225	0.23	-0.4
1,729,506	-	DZA65_RS08225	0.23	-0.5
1,729,506	-	DZA65_RS08225	0.23	-1.8
1,729,507	+	DZA65_RS08225	0.23	-0.8
1,729,507	+	DZA65_RS08225	0.23	-0.8
1,729,507	+	DZA65_RS08225	0.23	-0.2
1,729,507	+	DZA65_RS08225	0.23	+1.1
1,729,507	+	DZA65_RS08225	0.23	-0.8
1,729,507	+	DZA65_RS08225	0.23	+1.1
1,729,507	+	DZA65_RS08225	0.23	-0.4
1,729,508	-	DZA65_RS08225	0.24	+1.5
1,729,508	-	DZA65_RS08225	0.24	-0.2
1,729,508	-	DZA65_RS08225	0.24	-0.6
1,729,508	-	DZA65_RS08225	0.24	+0.2
1,729,508	-	DZA65_RS08225	0.24	-1.5
1,729,508	-	DZA65_RS08225	0.24	+0.8
1,729,560	+	DZA65_RS08225	0.34	-0.0
1,729,584	+	DZA65_RS08225	0.39	-1.4

Or see this region's nucleotide sequence